RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 KANSL3Q9P2N6 904 aa8.3□□□□□ -1.08
USP28-202ENST00000535607 CFAP65Q6ZU64 1925 aaKnown RBP8.3□□□□□ -1.08
USP28-202ENST00000535607 SETBP1Q9Y6X0 1596 aa8.3□□□□□ -1.08
USP28-202ENST00000535607 MAPK8IP3Q9UPT6 1336 aa8.29□□□□□ -1.08
USP28-202ENST00000535607 EREGO14944 169 aa8.29□□□□□ -1.08
USP28-202ENST00000535607 SIN3BO75182 1162 aa8.29□□□□□ -1.08
USP28-202ENST00000535607 ARAFP10398 606 aa8.29□□□□□ -1.08
USP28-202ENST00000535607 PTMSP20962 102 aa8.29□□□□□ -1.08
USP28-202ENST00000535607 NRLP54845 237 aa8.29□□□□□ -1.08
USP28-202ENST00000535607 PCBP4P57723 403 aaKnown RBP8.29□□□□□ -1.08
USP28-202ENST00000535607 IDI1Q13907 227 aa8.29□□□□□ -1.08
USP28-202ENST00000535607 HSP90AA2PQ14568 343 aaPredicted RBP8.29□□□□□ -1.08
USP28-202ENST00000535607 NGEFQ8N5V2 710 aa8.29□□□□□ -1.08
USP28-202ENST00000535607 MRRFQ96E11 262 aaKnown RBP8.29□□□□□ -1.08
USP28-202ENST00000535607 NSUN5Q96P11 429 aaKnown RBP8.29□□□□□ -1.08
USP28-202ENST00000535607 CARD11Q9BXL7 1154 aa8.29□□□□□ -1.08
USP28-202ENST00000535607 COL25A1Q9BXS0 654 aaPredicted RBP8.29□□□□□ -1.08
USP28-202ENST00000535607 CNTN3Q9P232 1028 aa8.29□□□□□ -1.08
USP28-202ENST00000535607 ZFATQ9P243 1243 aa8.29□□□□□ -1.08
USP28-202ENST00000535607 VTI1BQ9UEU0 232 aa8.29□□□□□ -1.08
USP28-202ENST00000535607 NINLQ9Y2I6 1382 aa8.29□□□□□ -1.08
USP28-202ENST00000535607 DIP2AQ14689 1571 aa8.29□□□□□ -1.08
USP28-202ENST00000535607 BLMP54132 1417 aaPredicted RBP8.29□□□□□ -1.08
USP28-202ENST00000535607 GPRASP1Q5JY77 1395 aa8.28□□□□□ -1.08
USP28-202ENST00000535607 PARD3Q8TEW0 1356 aa8.28□□□□□ -1.08
USP28-202ENST00000535607 TMEM2Q9UHN6 1383 aa8.28□□□□□ -1.08
USP28-202ENST00000535607 SORBS3O60504 671 aa8.28□□□□□ -1.08
USP28-202ENST00000535607 POLR3DP05423 398 aaPredicted RBP8.28□□□□□ -1.08
USP28-202ENST00000535607 GRIN2CQ14957 1233 aa8.28□□□□□ -1.08
USP28-202ENST00000535607 GOLGA6L1Q8N7Z2 621 aa8.28□□□□□ -1.08
USP28-202ENST00000535607 CRBNQ96SW2 442 aa8.28□□□□□ -1.08
USP28-202ENST00000535607 NPHS2Q9NP85 383 aa8.28□□□□□ -1.08
USP28-202ENST00000535607 PARP2Q9UGN5 583 aa8.28□□□□□ -1.08
USP28-202ENST00000535607 GDF2Q9UK05 429 aaPredicted RBP8.28□□□□□ -1.08
USP28-202ENST00000535607 WWC3Q9ULE0 1092 aa8.28□□□□□ -1.08
USP28-202ENST00000535607 TRAK1Q9UPV9 953 aa8.28□□□□□ -1.08
USP28-202ENST00000535607 GOLGA6L3A6NEY3 463 aa8.27□□□□□ -1.09
USP28-202ENST00000535607 GIPC1O14908 333 aa8.27□□□□□ -1.09
USP28-202ENST00000535607 VSIG8P0DPA2 414 aa8.27□□□□□ -1.09
USP28-202ENST00000535607 EIF2AK2P19525 551 aaKnown RBP8.27□□□□□ -1.09
USP28-202ENST00000535607 EIF4BP23588 611 aaKnown RBP8.27□□□□□ -1.09
USP28-202ENST00000535607 GNA15P30679 374 aa8.27□□□□□ -1.09
USP28-202ENST00000535607 GPLD1P80108 840 aa8.27□□□□□ -1.09
USP28-202ENST00000535607 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.27□□□□□ -1.09
USP28-202ENST00000535607 GALNT12Q8IXK2 581 aa8.27□□□□□ -1.09
USP28-202ENST00000535607 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.27□□□□□ -1.09
USP28-202ENST00000535607 NAP1L5Q96NT1 182 aaPredicted RBP8.27□□□□□ -1.09
USP28-202ENST00000535607 EHD4Q9H223 541 aa8.27□□□□□ -1.09
USP28-202ENST00000535607 DNAJB12Q9NXW2 375 aaKnown RBP8.27□□□□□ -1.09
USP28-202ENST00000535607 RIMS2Q9UQ26 1411 aa8.27□□□□□ -1.09
USP28-202ENST00000535607 KDM2BQ8NHM5 1336 aa8.27□□□□□ -1.09
USP28-202ENST00000535607 SCAF11Q99590 1463 aaKnown RBP8.26□□□□□ -1.09
USP28-202ENST00000535607 NEURL1BA8MQ27 555 aa8.26□□□□□ -1.09
USP28-202ENST00000535607 FRAT2O75474 233 aaPredicted RBP8.26□□□□□ -1.09
USP28-202ENST00000535607 CYP2E1P05181 493 aaPredicted RBP8.26□□□□□ -1.09
USP28-202ENST00000535607 MLLT1Q03111 559 aaPredicted RBP8.26□□□□□ -1.09
USP28-202ENST00000535607 USPL1Q5W0Q7 1092 aa8.26□□□□□ -1.09
USP28-202ENST00000535607 DCAF11Q8TEB1 546 aa8.26□□□□□ -1.09
USP28-202ENST00000535607 ZNF428Q96B54 188 aa8.26□□□□□ -1.09
USP28-202ENST00000535607 OXCT2Q9BYC2 517 aaPredicted RBP8.26□□□□□ -1.09
USP28-202ENST00000535607 CHRDQ9H2X0 955 aa8.26□□□□□ -1.09
USP28-202ENST00000535607 IQGAP1P46940 1657 aa8.25□□□□□ -1.09
USP28-202ENST00000535607 LOC102724428A0A0B4J2F2 783 aa8.25□□□□□ -1.09
USP28-202ENST00000535607 SMNDC1O75940 238 aaKnown RBP eCLIP8.25□□□□□ -1.09
USP28-202ENST00000535607 TPM2P07951 284 aa8.25□□□□□ -1.09
USP28-202ENST00000535607 SIK1P57059 783 aa8.25□□□□□ -1.09
USP28-202ENST00000535607 SRSF11Q05519 484 aaKnown RBP8.25□□□□□ -1.09
USP28-202ENST00000535607 NFX1Q12986 1120 aaKnown RBP8.25□□□□□ -1.09
USP28-202ENST00000535607 ELMSAN1Q6PJG2 1045 aa8.25□□□□□ -1.09
USP28-202ENST00000535607 FAM35AQ86V20 835 aa8.25□□□□□ -1.09
USP28-202ENST00000535607 TRPM4Q8TD43 1214 aa8.25□□□□□ -1.09
USP28-202ENST00000535607 CNTNAP3BQ96NU0 1288 aa8.25□□□□□ -1.09
USP28-202ENST00000535607 CNTNAP3Q9BZ76 1288 aa8.25□□□□□ -1.09
USP28-202ENST00000535607 SRCIN1Q9C0H9 1055 aa8.25□□□□□ -1.09
USP28-202ENST00000535607 SETD1AO15047 1707 aaKnown RBP8.25□□□□□ -1.09
USP28-202ENST00000535607 NRXN3Q9Y4C0 1643 aa8.25□□□□□ -1.09
USP28-202ENST00000535607 PLEKHG1Q9ULL1 1385 aa8.24□□□□□ -1.09
USP28-202ENST00000535607 ADGRB1O14514 1584 aa8.24□□□□□ -1.09
USP28-202ENST00000535607 CPB1P15086 417 aa8.24□□□□□ -1.09
USP28-202ENST00000535607 ADH7P40394 386 aa8.24□□□□□ -1.09
USP28-202ENST00000535607 CEBPAP49715 358 aaPredicted RBP8.24□□□□□ -1.09
USP28-202ENST00000535607 GAS6Q14393 721 aa8.24□□□□□ -1.09
USP28-202ENST00000535607 WDR43Q15061 677 aaKnown RBP eCLIP8.24□□□□□ -1.09
USP28-202ENST00000535607 RGL3Q3MIN7 710 aa8.24□□□□□ -1.09
USP28-202ENST00000535607 HFE2Q6ZVN8 426 aa8.24□□□□□ -1.09
USP28-202ENST00000535607 TMC4Q7Z404 712 aa8.24□□□□□ -1.09
USP28-202ENST00000535607 THEMISQ8N1K5 641 aaPredicted RBP8.24□□□□□ -1.09
USP28-202ENST00000535607 GPR161Q8N6U8 529 aaKnown RBP8.24□□□□□ -1.09
USP28-202ENST00000535607 EPS8L3Q8TE67 593 aaKnown RBP8.24□□□□□ -1.09
USP28-202ENST00000535607 TNFRSF25Q93038 417 aa8.24□□□□□ -1.09
USP28-202ENST00000535607 GGA1Q9UJY5 639 aa8.24□□□□□ -1.09
USP28-202ENST00000535607 CGNL1Q0VF96 1302 aa8.24□□□□□ -1.09
USP28-202ENST00000535607 KNDC1Q76NI1 1749 aa8.23□□□□□ -1.09
USP28-202ENST00000535607 C2CD2LO14523 706 aa8.23□□□□□ -1.09
USP28-202ENST00000535607 HOXD8P13378 290 aaPredicted RBP8.23□□□□□ -1.09
USP28-202ENST00000535607 MRE11P49959 708 aa8.23□□□□□ -1.09
USP28-202ENST00000535607 DAB2P98082 770 aa8.23□□□□□ -1.09
USP28-202ENST00000535607 TAGLNQ01995 201 aaKnown RBP8.23□□□□□ -1.09
USP28-202ENST00000535607 CNGB1Q14028 1251 aaPredicted RBP8.23□□□□□ -1.09
USP28-202ENST00000535607 TRIM44Q96DX7 344 aaPredicted RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms