RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 GNL2Q13823 731 aaKnown RBP5.36□□□□□ -1.55
CSMD3-210ENST00000534172 ACAD11Q709F0 780 aa5.36□□□□□ -1.55
CSMD3-210ENST00000534172 PHC3Q8NDX5 983 aa5.36□□□□□ -1.55
CSMD3-210ENST00000534172 AKTIPQ9H8T0 292 aa5.36□□□□□ -1.55
CSMD3-210ENST00000534172 USP21Q9UK80 565 aa5.36□□□□□ -1.55
CSMD3-210ENST00000534172 FBXO24O75426 580 aa5.35□□□□□ -1.55
CSMD3-210ENST00000534172 KIF4BQ2VIQ3 1234 aa5.35□□□□□ -1.55
CSMD3-210ENST00000534172 UVSSAQ2YD98 709 aa5.35□□□□□ -1.55
CSMD3-210ENST00000534172 NUTM2GQ5VZR2 741 aa5.35□□□□□ -1.55
CSMD3-210ENST00000534172 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.35□□□□□ -1.55
CSMD3-210ENST00000534172 PDZD3Q86UT5 571 aa5.35□□□□□ -1.55
CSMD3-210ENST00000534172 KCNB2Q92953 911 aa5.35□□□□□ -1.55
CSMD3-210ENST00000534172 CCSER2Q9H7U1 834 aa5.35□□□□□ -1.55
CSMD3-210ENST00000534172 CACNA2D2Q9NY47 1150 aa5.35□□□□□ -1.55
CSMD3-210ENST00000534172 SUPT16HQ9Y5B9 1047 aaKnown RBP5.35□□□□□ -1.55
CSMD3-210ENST00000534172 SNCAIPQ9Y6H5 919 aa5.35□□□□□ -1.55
CSMD3-210ENST00000534172 F8W735 103 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-210ENST00000534172 ERCC5P28715 1186 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-210ENST00000534172 TRIM42Q8IWZ5 723 aa5.35□□□□□ -1.55
CSMD3-210ENST00000534172 TMPRSS13Q9BYE2 586 aa5.35□□□□□ -1.55
CSMD3-210ENST00000534172 KCNQ5Q9NR82 932 aa5.35□□□□□ -1.55
CSMD3-210ENST00000534172 ADGRE1Q14246 886 aa5.34□□□□□ -1.55
CSMD3-210ENST00000534172 SNAP47Q5SQN1 464 aa5.34□□□□□ -1.55
CSMD3-210ENST00000534172 FDX2Q6P4F2 183 aa5.34□□□□□ -1.55
CSMD3-210ENST00000534172 METTL16Q86W50 562 aaKnown RBP5.34□□□□□ -1.55
CSMD3-210ENST00000534172 ACSBG1Q96GR2 724 aa5.34□□□□□ -1.55
CSMD3-210ENST00000534172 YIPF2Q9BWQ6 316 aa5.34□□□□□ -1.55
CSMD3-210ENST00000534172 DDX41Q9UJV9 622 aaKnown RBP5.34□□□□□ -1.55
CSMD3-210ENST00000534172 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.34□□□□□ -1.55
CSMD3-210ENST00000534172 ADAM11O75078 769 aa5.34□□□□□ -1.56
CSMD3-210ENST00000534172 COL8A1P27658 744 aa5.34□□□□□ -1.56
CSMD3-210ENST00000534172 EIF4A3P38919 411 aaKnown RBP5.34□□□□□ -1.56
CSMD3-210ENST00000534172 COL9A2Q14055 689 aaPredicted RBP5.34□□□□□ -1.56
CSMD3-210ENST00000534172 HGSNATQ68CP4 663 aa5.34□□□□□ -1.56
CSMD3-210ENST00000534172 NT5DC4Q86YG4 428 aa5.34□□□□□ -1.56
CSMD3-210ENST00000534172 C8orf37Q96NL8 207 aa5.34□□□□□ -1.56
CSMD3-210ENST00000534172 KBTBD4Q9NVX7 518 aa5.34□□□□□ -1.56
CSMD3-210ENST00000534172 HIF3AQ9Y2N7 669 aa5.34□□□□□ -1.56
CSMD3-210ENST00000534172 LMTK3Q96Q04 1460 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 FAM229AH3BQW9 127 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 SART1O43290 800 aaKnown RBP5.33□□□□□ -1.56
CSMD3-210ENST00000534172 PAGE1O75459 146 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 BPNT1O95861 308 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 CAMK2GQ13555 558 aaPredicted RBP5.33□□□□□ -1.56
CSMD3-210ENST00000534172 MAP3K11Q16584 847 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 Q6ZS46 218 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 KIAA1211Q6ZU35 1233 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 HDXQ7Z353 690 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 VPS37DQ86XT2 251 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 KIAA0825Q8IV33 1275 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 UBASH3BQ8TF42 649 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 RHOVQ96L33 236 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 ATXN3LQ9H3M9 355 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 KCNK4Q9NYG8 393 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 AOC2O75106 756 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 SELPP16109 830 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 MAP1SQ66K74 1059 aaPredicted RBP5.33□□□□□ -1.56
CSMD3-210ENST00000534172 TXNRD3Q86VQ6 643 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 DCAF5Q96JK2 942 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 NT5C1AQ9BXI3 368 aa5.33□□□□□ -1.56
CSMD3-210ENST00000534172 CCDC86Q9H6F5 360 aaKnown RBP5.33□□□□□ -1.56
CSMD3-210ENST00000534172 EIF4G1Q04637 1599 aaKnown RBP5.33□□□□□ -1.56
CSMD3-210ENST00000534172 DDX3YO15523 660 aaKnown RBP5.32□□□□□ -1.56
CSMD3-210ENST00000534172 TFE3P19532 575 aaPredicted RBP5.32□□□□□ -1.56
CSMD3-210ENST00000534172 ID3Q02535 119 aa5.32□□□□□ -1.56
CSMD3-210ENST00000534172 MPP2Q14168 576 aa5.32□□□□□ -1.56
CSMD3-210ENST00000534172 GRIK4Q16099 956 aa5.32□□□□□ -1.56
CSMD3-210ENST00000534172 TMEM151AQ8N4L1 468 aa5.32□□□□□ -1.56
CSMD3-210ENST00000534172 WFDC12Q8WWY7 111 aa5.32□□□□□ -1.56
CSMD3-210ENST00000534172 SPON2Q9BUD6 331 aa5.32□□□□□ -1.56
CSMD3-210ENST00000534172 PF4P02776 101 aa5.32□□□□□ -1.56
CSMD3-210ENST00000534172 ZC3H6P61129 1189 aaKnown RBP5.32□□□□□ -1.56
CSMD3-210ENST00000534172 RASSF7Q02833 373 aa5.32□□□□□ -1.56
CSMD3-210ENST00000534172 SOX4Q06945 474 aaPredicted RBP5.32□□□□□ -1.56
CSMD3-210ENST00000534172 KCT2Q8NC54 265 aa5.32□□□□□ -1.56
CSMD3-210ENST00000534172 GPBAR1Q8TDU6 330 aa5.32□□□□□ -1.56
CSMD3-210ENST00000534172 SREK1Q8WXA9 508 aaKnown RBP5.32□□□□□ -1.56
CSMD3-210ENST00000534172 GATAD2BQ8WXI9 593 aa5.32□□□□□ -1.56
CSMD3-210ENST00000534172 DRC1Q96MC2 740 aa5.32□□□□□ -1.56
CSMD3-210ENST00000534172 LRRC3Q9BY71 257 aa5.32□□□□□ -1.56
CSMD3-210ENST00000534172 ERCC6L2Q5T890 1561 aa5.31□□□□□ -1.56
CSMD3-210ENST00000534172 MINDY4BA8MYZ0 360 aa5.31□□□□□ -1.56
CSMD3-210ENST00000534172 ERVK-24P63145 666 aa5.31□□□□□ -1.56
CSMD3-210ENST00000534172 RPL6Q02878 288 aaKnown RBP5.31□□□□□ -1.56
CSMD3-210ENST00000534172 SLC43A3Q8NBI5 491 aa5.31□□□□□ -1.56
CSMD3-210ENST00000534172 STK35Q8TDR2 534 aa5.31□□□□□ -1.56
CSMD3-210ENST00000534172 PUS7Q96PZ0 661 aaKnown RBP5.31□□□□□ -1.56
CSMD3-210ENST00000534172 PCDHA4Q9UN74 947 aa5.31□□□□□ -1.56
CSMD3-210ENST00000534172 GAS2O43903 313 aaKnown RBP5.31□□□□□ -1.56
CSMD3-210ENST00000534172 GREM1O60565 184 aa5.31□□□□□ -1.56
CSMD3-210ENST00000534172 MBTPS1Q14703 1052 aa5.31□□□□□ -1.56
CSMD3-210ENST00000534172 CWF19L2Q2TBE0 894 aaKnown RBP5.31□□□□□ -1.56
CSMD3-210ENST00000534172 FAM196AQ6ZSG2 479 aa5.31□□□□□ -1.56
CSMD3-210ENST00000534172 ZNF296Q8WUU4 475 aaPredicted RBP5.31□□□□□ -1.56
CSMD3-210ENST00000534172 ELMO3Q96BJ8 720 aa5.31□□□□□ -1.56
CSMD3-210ENST00000534172 WDR18Q9BV38 432 aa5.31□□□□□ -1.56
CSMD3-210ENST00000534172 RIMBP3CA6NJZ7 1639 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 RIMBP3BA6NNM3 1639 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 RIMBP3Q9UFD9 1639 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms