RNA–Protein interactions for RNA: ENST00000529472.1

CHD7-209, Transcript of chromodomain helicase DNA binding protein 7, human

TSL 3

Gene CHD7, Length 788 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD7-209	ENST00000529472	ZSCAN25	Q6NSZ9	544 aa		13.8	□□□□□ -0.2
CHD7-209	ENST00000529472	MIGA1	Q8NAN2	632 aa		13.8	□□□□□ -0.2
CHD7-209	ENST00000529472	FAM163A	Q96GL9	167 aa	Predicted RBP	13.8	□□□□□ -0.2
CHD7-209	ENST00000529472	NOL10	Q9BSC4	688 aa	Known RBP	13.8	□□□□□ -0.2
CHD7-209	ENST00000529472	TDRD3	Q9H7E2	651 aa	Known RBP	13.8	□□□□□ -0.2
CHD7-209	ENST00000529472	VEZT	Q9HBM0	779 aa		13.8	□□□□□ -0.2
CHD7-209	ENST00000529472	SCAF8	Q9UPN6	1271 aa	Known RBP	13.8	□□□□□ -0.2
CHD7-209	ENST00000529472	TCRBV5S4A2T	A0A5A2	114 aa		13.79	□□□□□ -0.2
CHD7-209	ENST00000529472	CACNB3	P54284	484 aa		13.79	□□□□□ -0.2
CHD7-209	ENST00000529472	MAP1S	Q66K74	1059 aa	Predicted RBP	13.79	□□□□□ -0.2
CHD7-209	ENST00000529472	USP40	Q9NVE5	1235 aa		13.79	□□□□□ -0.2
CHD7-209	ENST00000529472	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.79	□□□□□ -0.2
CHD7-209	ENST00000529472	POLR2A	P24928	1970 aa	Known RBP	13.78	□□□□□ -0.2
CHD7-209	ENST00000529472	GPR75-ASB3	A0A0A6YYF3	556 aa		13.78	□□□□□ -0.2
CHD7-209	ENST00000529472	RNF113A	O15541	343 aa	Known RBP	13.78	□□□□□ -0.2
CHD7-209	ENST00000529472	IGSF3	O75054	1194 aa		13.78	□□□□□ -0.2
CHD7-209	ENST00000529472	SDS	P20132	328 aa		13.78	□□□□□ -0.2
CHD7-209	ENST00000529472	LRRFIP1	Q32MZ4	808 aa	Known RBP	13.78	□□□□□ -0.2
CHD7-209	ENST00000529472	SPDYE2	Q495Y8	402 aa		13.78	□□□□□ -0.2
CHD7-209	ENST00000529472	CDC42EP5	Q6NZY7	148 aa		13.78	□□□□□ -0.2
CHD7-209	ENST00000529472	ZC3H15	Q8WU90	426 aa	Known RBP	13.78	□□□□□ -0.2
CHD7-209	ENST00000529472	DCPS	Q96C86	337 aa	Known RBP	13.78	□□□□□ -0.2
CHD7-209	ENST00000529472	TMOD2	Q9NZR1	351 aa		13.78	□□□□□ -0.2
CHD7-209	ENST00000529472	ZNF70	Q9UC06	446 aa	Predicted RBP	13.78	□□□□□ -0.2
CHD7-209	ENST00000529472	MAGEB6P1	A0A0J9YX57	407 aa		13.77	□□□□□ -0.21
CHD7-209	ENST00000529472	BAG3	O95817	575 aa		13.77	□□□□□ -0.21
CHD7-209	ENST00000529472	ZFY	P08048	801 aa	Predicted RBP	13.77	□□□□□ -0.21
CHD7-209	ENST00000529472	DYNLL1	P63167	89 aa	Known RBP	13.77	□□□□□ -0.21
CHD7-209	ENST00000529472	UBE3C	Q15386	1083 aa		13.77	□□□□□ -0.21
CHD7-209	ENST00000529472	CHADL	Q6NUI6	762 aa		13.77	□□□□□ -0.21
CHD7-209	ENST00000529472	TMED8	Q6PL24	325 aa	Predicted RBP	13.77	□□□□□ -0.21
CHD7-209	ENST00000529472	APOBEC3F	Q8IUX4	373 aa	Known RBP	13.77	□□□□□ -0.21
CHD7-209	ENST00000529472	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	13.77	□□□□□ -0.21
CHD7-209	ENST00000529472	RFX7	Q2KHR2	1363 aa		13.76	□□□□□ -0.21
CHD7-209	ENST00000529472	PITPNM2	Q9BZ72	1349 aa		13.76	□□□□□ -0.21
CHD7-209	ENST00000529472	TCP10L2	B9ZVM9	353 aa		13.76	□□□□□ -0.21
CHD7-209	ENST00000529472	ADM5	C9JUS6	153 aa		13.76	□□□□□ -0.21
CHD7-209	ENST00000529472	TOMM70	O94826	608 aa		13.76	□□□□□ -0.21
CHD7-209	ENST00000529472	MBD4	O95243	580 aa		13.76	□□□□□ -0.21
CHD7-209	ENST00000529472	RHBDL3	P58872	404 aa		13.76	□□□□□ -0.21
CHD7-209	ENST00000529472	KRT26	Q7Z3Y9	468 aa		13.76	□□□□□ -0.21
CHD7-209	ENST00000529472	SULF1	Q8IWU6	871 aa		13.76	□□□□□ -0.21
CHD7-209	ENST00000529472	TEX11	Q8IYF3	940 aa		13.76	□□□□□ -0.21
CHD7-209	ENST00000529472	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.76	□□□□□ -0.21
CHD7-209	ENST00000529472	PGAP2	Q9UHJ9	254 aa		13.76	□□□□□ -0.21
CHD7-209	ENST00000529472	CDK5RAP2	Q96SN8	1893 aa		13.76	□□□□□ -0.21
CHD7-209	ENST00000529472		M0R2C6	588 aa		13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	PLCG2	P16885	1265 aa		13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	PPP4C	P60510	307 aa		13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	TCP10	Q12799	353 aa		13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	NFIA	Q12857	509 aa		13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	PICALM	Q13492	652 aa		13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	BMP2KL	Q5H9B9	411 aa		13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	USP48	Q86UV5	1035 aa		13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	LCORL	Q8N3X6	602 aa		13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	SMC1B	Q8NDV3	1235 aa		13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	RBM46	Q8TBY0	533 aa	Known RBP	13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	APPBP2	Q92624	585 aa		13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	OSBP2	Q969R2	916 aa		13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	AIDA	Q96BJ3	306 aa		13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	PUS7L	Q9H0K6	701 aa	Known RBP	13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	ARMT1	Q9H993	441 aa		13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	DIAPH3	Q9NSV4	1193 aa		13.75	□□□□□ -0.21
CHD7-209	ENST00000529472	TRAF5	O00463	557 aa		13.74	□□□□□ -0.21
CHD7-209	ENST00000529472	WDHD1	O75717	1129 aa	Predicted RBP	13.74	□□□□□ -0.21
CHD7-209	ENST00000529472	NMI	Q13287	307 aa	Predicted RBP	13.74	□□□□□ -0.21
CHD7-209	ENST00000529472	TNFAIP1	Q13829	316 aa		13.74	□□□□□ -0.21
CHD7-209	ENST00000529472	ZMYM1	Q5SVZ6	1142 aa		13.74	□□□□□ -0.21
CHD7-209	ENST00000529472	DLK2	Q6UY11	383 aa		13.74	□□□□□ -0.21
CHD7-209	ENST00000529472	CDC37L1	Q7L3B6	337 aa		13.74	□□□□□ -0.21
CHD7-209	ENST00000529472	FAM227B	Q96M60	508 aa		13.74	□□□□□ -0.21
CHD7-209	ENST00000529472	SEC62	Q99442	399 aa	Known RBP	13.74	□□□□□ -0.21
CHD7-209	ENST00000529472	RIOK1	Q9BRS2	568 aa	Known RBP	13.74	□□□□□ -0.21
CHD7-209	ENST00000529472	FOCAD	Q5VW36	1801 aa		13.74	□□□□□ -0.21
CHD7-209	ENST00000529472	CNTNAP1	P78357	1384 aa		13.73	□□□□□ -0.21
CHD7-209	ENST00000529472		A0A0D9SFI3	127 aa		13.73	□□□□□ -0.21
CHD7-209	ENST00000529472	USP5	P45974	858 aa		13.73	□□□□□ -0.21
CHD7-209	ENST00000529472	TNNI2	P48788	182 aa		13.73	□□□□□ -0.21
CHD7-209	ENST00000529472	RASA3	Q14644	834 aa		13.73	□□□□□ -0.21
CHD7-209	ENST00000529472	PRAMEF18	Q5VWM3	479 aa		13.73	□□□□□ -0.21
CHD7-209	ENST00000529472	CERS3	Q8IU89	383 aa		13.73	□□□□□ -0.21
CHD7-209	ENST00000529472	TGFBRAP1	Q8WUH2	860 aa		13.73	□□□□□ -0.21
CHD7-209	ENST00000529472	TMEM39B	Q9GZU3	492 aa		13.73	□□□□□ -0.21
CHD7-209	ENST00000529472	DEFB129	Q9H1M3	183 aa		13.73	□□□□□ -0.21
CHD7-209	ENST00000529472	DDX4	Q9NQI0	724 aa	Known RBP	13.73	□□□□□ -0.21
CHD7-209	ENST00000529472	FAM198A	Q9UFP1	575 aa		13.73	□□□□□ -0.21
CHD7-209	ENST00000529472	NAV1	Q8NEY1	1877 aa		13.72	□□□□□ -0.21
CHD7-209	ENST00000529472	CEP350	Q5VT06	3117 aa		13.72	□□□□□ -0.21
CHD7-209	ENST00000529472	HIP1	O00291	1037 aa		13.72	□□□□□ -0.21
CHD7-209	ENST00000529472	GPAA1	O43292	621 aa		13.72	□□□□□ -0.21
CHD7-209	ENST00000529472	FMR1	Q06787	632 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
CHD7-209	ENST00000529472	FKBP1C	Q5VVH2	108 aa		13.72	□□□□□ -0.21
CHD7-209	ENST00000529472	CWC27	Q6UX04	472 aa	Known RBP	13.72	□□□□□ -0.21
CHD7-209	ENST00000529472	CCDC129	Q6ZRS4	1044 aa		13.72	□□□□□ -0.21
CHD7-209	ENST00000529472	TICAM2	Q86XR7	235 aa		13.72	□□□□□ -0.21
CHD7-209	ENST00000529472	MAPKAPK5	Q8IW41	473 aa		13.72	□□□□□ -0.21
CHD7-209	ENST00000529472	IDI2	Q9BXS1	227 aa		13.72	□□□□□ -0.21
CHD7-209	ENST00000529472	CRNKL1	Q9BZJ0	848 aa	Known RBP	13.72	□□□□□ -0.21
CHD7-209	ENST00000529472	FLT1	P17948	1338 aa		13.71	□□□□□ -0.21
CHD7-209	ENST00000529472	PRKAB2	O43741	272 aa		13.71	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms