RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 PATL2C9JE40 543 aaKnown RBP22.4■■□□□ 1.18
VPS28-207ENST00000526977 BAG4O95429 457 aaKnown RBP22.4■■□□□ 1.18
VPS28-207ENST00000526977 MIGA1Q8NAN2 632 aa22.4■■□□□ 1.18
VPS28-207ENST00000526977 CHD4Q14839 1912 aa22.39■■□□□ 1.17
VPS28-207ENST00000526977 IARSP41252 1262 aaKnown RBP22.39■■□□□ 1.17
VPS28-207ENST00000526977 GRIK5Q16478 980 aa22.39■■□□□ 1.17
VPS28-207ENST00000526977 RIOK1Q9BRS2 568 aaKnown RBP22.39■■□□□ 1.17
VPS28-207ENST00000526977 ARMT1Q9H993 441 aa22.39■■□□□ 1.17
VPS28-207ENST00000526977 LTBP3Q9NS15 1303 aa22.39■■□□□ 1.17
VPS28-207ENST00000526977 CCDC88AQ3V6T2 1871 aa22.38■■□□□ 1.17
VPS28-207ENST00000526977 CERS3Q8IU89 383 aa22.38■■□□□ 1.17
VPS28-207ENST00000526977 LCORLQ8N3X6 602 aa22.38■■□□□ 1.17
VPS28-207ENST00000526977 FAM163AQ96GL9 167 aaPredicted RBP22.38■■□□□ 1.17
VPS28-207ENST00000526977 SYT17Q9BSW7 474 aa22.38■■□□□ 1.17
VPS28-207ENST00000526977 BLOC1S2Q6QNY1 142 aa22.38■■□□□ 1.17
VPS28-207ENST00000526977 KCNQ5Q9NR82 932 aa22.38■■□□□ 1.17
VPS28-207ENST00000526977 GOLGB1Q14789 3259 aaKnown RBP22.37■■□□□ 1.17
VPS28-207ENST00000526977 NFKBIEO00221 500 aa22.37■■□□□ 1.17
VPS28-207ENST00000526977 FOXP2O15409 715 aa22.37■■□□□ 1.17
VPS28-207ENST00000526977 BAG3O95817 575 aa22.37■■□□□ 1.17
VPS28-207ENST00000526977 FGAP02671 866 aa22.37■■□□□ 1.17
VPS28-207ENST00000526977 APPP05067 770 aa22.37■■□□□ 1.17
VPS28-207ENST00000526977 ALX1Q15699 326 aa22.37■■□□□ 1.17
VPS28-207ENST00000526977 DACT2Q5SW24 774 aa22.37■■□□□ 1.17
VPS28-207ENST00000526977 CERS5Q8N5B7 392 aa22.37■■□□□ 1.17
VPS28-207ENST00000526977 ZSCAN31Q96LW9 406 aaPredicted RBP22.37■■□□□ 1.17
VPS28-207ENST00000526977 ALDH8A1Q9H2A2 487 aaPredicted RBP22.37■■□□□ 1.17
VPS28-207ENST00000526977 CYP21A2P08686 494 aa22.36■■□□□ 1.17
VPS28-207ENST00000526977 RPS6KB1P23443 525 aa22.36■■□□□ 1.17
VPS28-207ENST00000526977 KRT32Q14532 448 aa22.36■■□□□ 1.17
VPS28-207ENST00000526977 NIM1KQ8IY84 436 aa22.36■■□□□ 1.17
VPS28-207ENST00000526977 NOL10Q9BSC4 688 aaKnown RBP22.36■■□□□ 1.17
VPS28-207ENST00000526977 NACAP1Q9BZK3 213 aa22.36■■□□□ 1.17
VPS28-207ENST00000526977 SLC4A4Q9Y6R1 1079 aa22.36■■□□□ 1.17
VPS28-207ENST00000526977 MAST2Q6P0Q8 1798 aa22.36■■□□□ 1.17
VPS28-207ENST00000526977 LARGE1O95461 756 aa22.36■■□□□ 1.17
VPS28-207ENST00000526977 ZNRF3Q9ULT6 936 aa22.36■■□□□ 1.17
VPS28-207ENST00000526977 MROH7-TTC4A0A0A0MT08 1334 aa22.36■■□□□ 1.17
VPS28-207ENST00000526977 FER1L6Q2WGJ9 1857 aa22.35■■□□□ 1.17
VPS28-207ENST00000526977 YDJCA8MPS7 323 aa22.35■■□□□ 1.17
VPS28-207ENST00000526977 PPP4CP60510 307 aa22.35■■□□□ 1.17
VPS28-207ENST00000526977 JDP2Q8WYK2 163 aa22.35■■□□□ 1.17
VPS28-207ENST00000526977 MRIQ9BWK5 157 aa22.35■■□□□ 1.17
VPS28-207ENST00000526977 AATFQ9NY61 560 aaKnown RBP eCLIP22.35■■□□□ 1.176e-6■■■■□ 25.6
VPS28-207ENST00000526977 ZMYM6O95789 1325 aa22.35■■□□□ 1.17
VPS28-207ENST00000526977 GSG1L2A8MUP6 293 aa22.35■■□□□ 1.17
VPS28-207ENST00000526977 BRD1O95696 1058 aa22.35■■□□□ 1.17
VPS28-207ENST00000526977 DIXDC1Q155Q3 683 aa22.35■■□□□ 1.17
VPS28-207ENST00000526977 IMMTQ16891 758 aaKnown RBP22.35■■□□□ 1.17
VPS28-207ENST00000526977 IFNL3Q8IZI9 196 aa22.35■■□□□ 1.17
VPS28-207ENST00000526977 TTF2Q9UNY4 1162 aaKnown RBP22.35■■□□□ 1.17
VPS28-207ENST00000526977 PTMSP20962 102 aa22.34■■□□□ 1.17
VPS28-207ENST00000526977 DYNLL1P63167 89 aaKnown RBP22.34■■□□□ 1.17
VPS28-207ENST00000526977 SH2B1Q9NRF2 756 aaPredicted RBP22.34■■□□□ 1.17
VPS28-207ENST00000526977 GPR75-ASB3A0A0A6YYF3 556 aa22.33■■□□□ 1.17
VPS28-207ENST00000526977 NEK1Q96PY6 1258 aa22.33■■□□□ 1.17
VPS28-207ENST00000526977 MXD3Q9BW11 206 aa22.33■■□□□ 1.17
VPS28-207ENST00000526977 CRNKL1Q9BZJ0 848 aaKnown RBP22.33■■□□□ 1.17
VPS28-207ENST00000526977 TPCN1Q9ULQ1 816 aa22.33■■□□□ 1.17
VPS28-207ENST00000526977 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.33■■□□□ 1.17
VPS28-207ENST00000526977 ARFGEF1Q9Y6D6 1849 aa22.33■■□□□ 1.17
VPS28-207ENST00000526977 ME3Q16798 604 aa22.33■■□□□ 1.16
VPS28-207ENST00000526977 GIMAP6Q6P9H5 292 aa22.33■■□□□ 1.16
VPS28-207ENST00000526977 TCEANC2Q96MN5 208 aa22.33■■□□□ 1.16
VPS28-207ENST00000526977 NAPBQ9H115 298 aa22.33■■□□□ 1.16
VPS28-207ENST00000526977 GAKO14976 1311 aa22.33■■□□□ 1.16
VPS28-207ENST00000526977 MYO3BQ8WXR4 1341 aa22.33■■□□□ 1.16
VPS28-207ENST00000526977 ZNF213O14771 459 aa22.32■■□□□ 1.16
VPS28-207ENST00000526977 PRKAB2O43741 272 aa22.32■■□□□ 1.16
VPS28-207ENST00000526977 PLCG2P16885 1265 aa22.32■■□□□ 1.16
VPS28-207ENST00000526977 HDLBPQ00341 1268 aaKnown RBP22.32■■□□□ 1.16
VPS28-207ENST00000526977 ANKRD1Q15327 319 aa22.32■■□□□ 1.16
VPS28-207ENST00000526977 HHIPL2Q6UWX4 724 aa22.32■■□□□ 1.16
VPS28-207ENST00000526977 F8W031 263 aaPredicted RBP22.31■■□□□ 1.16
VPS28-207ENST00000526977 GOLGA6L22H0YM25 854 aa22.31■■□□□ 1.16
VPS28-207ENST00000526977 VIL1P09327 827 aaKnown RBP22.31■■□□□ 1.16
VPS28-207ENST00000526977 ATP8A2Q9NTI2 1148 aa22.31■■□□□ 1.16
VPS28-207ENST00000526977 TOB2Q14106 344 aaPredicted RBP22.31■■□□□ 1.16
VPS28-207ENST00000526977 FOXD4L5Q5VV16 416 aaPredicted RBP22.31■■□□□ 1.16
VPS28-207ENST00000526977 FOXD4L4Q8WXT5 416 aaPredicted RBP22.31■■□□□ 1.16
VPS28-207ENST00000526977 SCN9AQ15858 1988 aa22.3■■□□□ 1.16
VPS28-207ENST00000526977 TDO2P48775 406 aa22.3■■□□□ 1.16
VPS28-207ENST00000526977 SKOR2Q2VWA4 1001 aaPredicted RBP22.3■■□□□ 1.16
VPS28-207ENST00000526977 MCTP1Q6DN14 999 aa22.3■■□□□ 1.16
VPS28-207ENST00000526977 STOX1Q6ZVD7 989 aa22.3■■□□□ 1.16
VPS28-207ENST00000526977 CCDC83Q8IWF9 413 aa22.3■■□□□ 1.16
VPS28-207ENST00000526977 TEKT1Q969V4 418 aa22.3■■□□□ 1.16
VPS28-207ENST00000526977 EPB41L4AQ9HCS5 686 aaPredicted RBP22.3■■□□□ 1.16
VPS28-207ENST00000526977 SOCS7O14512 581 aa22.3■■□□□ 1.16
VPS28-207ENST00000526977 BTDP43251 543 aa22.3■■□□□ 1.16
VPS28-207ENST00000526977 ST3GAL1Q11201 340 aa22.3■■□□□ 1.16
VPS28-207ENST00000526977 RSBN1LQ6PCB5 846 aaPredicted RBP22.3■■□□□ 1.16
VPS28-207ENST00000526977 KIAA0825Q8IV33 1275 aa22.3■■□□□ 1.16
VPS28-207ENST00000526977 SDR42E1Q8WUS8 393 aa22.3■■□□□ 1.16
VPS28-207ENST00000526977 RAD17O75943 681 aa22.29■■□□□ 1.16
VPS28-207ENST00000526977 GZF1Q9H116 711 aaPredicted RBP22.29■■□□□ 1.16
VPS28-207ENST00000526977 SMC3Q9UQE7 1217 aa22.29■■□□□ 1.16
VPS28-207ENST00000526977 DAGLAQ9Y4D2 1042 aa22.29■■□□□ 1.16
VPS28-207ENST00000526977 COL4A5P29400 1685 aa22.29■■□□□ 1.16
VPS28-207ENST00000526977 PSMD14O00487 310 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms