RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 RSRP1Q9BUV0 290 aa9.47□□□□□ -0.89
CPNE3-201ENST00000517354 METTL5Q9NRN9 209 aaKnown RBP9.47□□□□□ -0.89
CPNE3-201ENST00000517354 KRT82Q9NSB4 513 aa9.47□□□□□ -0.89
CPNE3-201ENST00000517354 ECEL1O95672 775 aa9.46□□□□□ -0.9
CPNE3-201ENST00000517354 RPS26P62854 115 aaKnown RBP9.46□□□□□ -0.9
CPNE3-201ENST00000517354 MBTPS1Q14703 1052 aa9.46□□□□□ -0.9
CPNE3-201ENST00000517354 AKAP4Q5JQC9 854 aa9.46□□□□□ -0.9
CPNE3-201ENST00000517354 ANKRD34AQ69YU3 496 aa9.46□□□□□ -0.9
CPNE3-201ENST00000517354 GRIN3AQ8TCU5 1115 aa9.46□□□□□ -0.9
CPNE3-201ENST00000517354 STK35Q8TDR2 534 aa9.46□□□□□ -0.9
CPNE3-201ENST00000517354 CCDC86Q9H6F5 360 aaKnown RBP9.46□□□□□ -0.9
CPNE3-201ENST00000517354 RECKO95980 971 aa9.45□□□□□ -0.9
CPNE3-201ENST00000517354 NOS3P29474 1203 aa9.45□□□□□ -0.9
CPNE3-201ENST00000517354 CHRNA4P43681 627 aa9.45□□□□□ -0.9
CPNE3-201ENST00000517354 NRSN2Q9GZP1 204 aa9.45□□□□□ -0.9
CPNE3-201ENST00000517354 F6X3S4 739 aa9.44□□□□□ -0.9
CPNE3-201ENST00000517354 AOC2O75106 756 aa9.44□□□□□ -0.9
CPNE3-201ENST00000517354 TRIM37O94972 964 aa9.44□□□□□ -0.9
CPNE3-201ENST00000517354 DLGAP3O95886 979 aa9.44□□□□□ -0.9
CPNE3-201ENST00000517354 AGMOQ6ZNB7 445 aa9.44□□□□□ -0.9
CPNE3-201ENST00000517354 PDZD3Q86UT5 571 aa9.44□□□□□ -0.9
CPNE3-201ENST00000517354 JARID2Q92833 1246 aaPredicted RBP9.44□□□□□ -0.9
CPNE3-201ENST00000517354 TMEM74Q96NL1 305 aa9.44□□□□□ -0.9
CPNE3-201ENST00000517354 TMPRSS13Q9BYE2 586 aa9.44□□□□□ -0.9
CPNE3-201ENST00000517354 MIR1-1HGQ9H1L0 117 aa9.44□□□□□ -0.9
CPNE3-201ENST00000517354 GAS2O43903 313 aaKnown RBP9.43□□□□□ -0.9
CPNE3-201ENST00000517354 CTSBP07858 339 aa9.43□□□□□ -0.9
CPNE3-201ENST00000517354 PLA2G4EQ3MJ16 856 aa9.43□□□□□ -0.9
CPNE3-201ENST00000517354 LDLRAD1Q5T700 205 aa9.43□□□□□ -0.9
CPNE3-201ENST00000517354 SCARA3Q6AZY7 606 aa9.43□□□□□ -0.9
CPNE3-201ENST00000517354 SMG8Q8ND04 991 aaKnown RBP9.43□□□□□ -0.9
CPNE3-201ENST00000517354 GPBAR1Q8TDU6 330 aa9.43□□□□□ -0.9
CPNE3-201ENST00000517354 PCDHA4Q9UN74 947 aa9.43□□□□□ -0.9
CPNE3-201ENST00000517354 TLR6Q9Y2C9 796 aa9.43□□□□□ -0.9
CPNE3-201ENST00000517354 GSK3AP49840 483 aa9.42□□□□□ -0.9
CPNE3-201ENST00000517354 USP11P51784 963 aa9.42□□□□□ -0.9
CPNE3-201ENST00000517354 FANCCQ00597 558 aa9.42□□□□□ -0.9
CPNE3-201ENST00000517354 SOX4Q06945 474 aaPredicted RBP9.42□□□□□ -0.9
CPNE3-201ENST00000517354 ZNF252P-AS1Q0IIN9 211 aa9.42□□□□□ -0.9
CPNE3-201ENST00000517354 C9orf131Q5VYM1 1079 aa9.42□□□□□ -0.9
CPNE3-201ENST00000517354 DYMQ7RTS9 669 aa9.42□□□□□ -0.9
CPNE3-201ENST00000517354 PICK1Q9NRD5 415 aa9.42□□□□□ -0.9
CPNE3-201ENST00000517354 KBTBD4Q9NVX7 518 aa9.42□□□□□ -0.9
CPNE3-201ENST00000517354 ZNF862O60290 1169 aa9.41□□□□□ -0.9
CPNE3-201ENST00000517354 DRD2P14416 443 aa9.41□□□□□ -0.9
CPNE3-201ENST00000517354 USP48Q86UV5 1035 aa9.41□□□□□ -0.9
CPNE3-201ENST00000517354 PHC3Q8NDX5 983 aa9.41□□□□□ -0.9
CPNE3-201ENST00000517354 WDR89Q96FK6 387 aaPredicted RBP9.41□□□□□ -0.9
CPNE3-201ENST00000517354 SUGCTQ9HAC7 445 aa9.41□□□□□ -0.9
CPNE3-201ENST00000517354 COPRSQ9NQ92 184 aa9.41□□□□□ -0.9
CPNE3-201ENST00000517354 AP4E1Q9UPM8 1137 aa9.41□□□□□ -0.9
CPNE3-201ENST00000517354 PCDHB5Q9Y5E4 795 aa9.41□□□□□ -0.9
CPNE3-201ENST00000517354 PF4P02776 101 aa9.4□□□□□ -0.9
CPNE3-201ENST00000517354 TCF3P15923 654 aa9.4□□□□□ -0.9
CPNE3-201ENST00000517354 ID3Q02535 119 aa9.4□□□□□ -0.9
CPNE3-201ENST00000517354 CAMK2GQ13555 558 aaPredicted RBP9.4□□□□□ -0.9
CPNE3-201ENST00000517354 SNAP47Q5SQN1 464 aa9.4□□□□□ -0.9
CPNE3-201ENST00000517354 RASIP1Q5U651 963 aa9.4□□□□□ -0.9
CPNE3-201ENST00000517354 MPRIPQ6WCQ1 1025 aa9.4□□□□□ -0.9
CPNE3-201ENST00000517354 ELMO3Q96BJ8 720 aa9.4□□□□□ -0.9
CPNE3-201ENST00000517354 WDR18Q9BV38 432 aa9.4□□□□□ -0.9
CPNE3-201ENST00000517354 TFE3P19532 575 aaPredicted RBP9.39□□□□□ -0.91
CPNE3-201ENST00000517354 LMNB2Q03252 620 aa9.39□□□□□ -0.91
CPNE3-201ENST00000517354 KIF4BQ2VIQ3 1234 aa9.39□□□□□ -0.91
CPNE3-201ENST00000517354 ERMP1Q7Z2K6 904 aa9.39□□□□□ -0.91
CPNE3-201ENST00000517354 TP53INP1Q96A56 240 aa9.39□□□□□ -0.91
CPNE3-201ENST00000517354 SYNGAP1Q96PV0 1343 aa9.38□□□□□ -0.91
CPNE3-201ENST00000517354 MSTNO14793 375 aa9.38□□□□□ -0.91
CPNE3-201ENST00000517354 BPNT1O95861 308 aa9.38□□□□□ -0.91
CPNE3-201ENST00000517354 RXRBP28702 533 aa9.38□□□□□ -0.91
CPNE3-201ENST00000517354 EIF4A3P38919 411 aaKnown RBP9.38□□□□□ -0.91
CPNE3-201ENST00000517354 ASPAP45381 313 aa9.38□□□□□ -0.91
CPNE3-201ENST00000517354 FAM160A1Q05DH4 1040 aa9.38□□□□□ -0.91
CPNE3-201ENST00000517354 SEPT6Q14141 434 aa9.38□□□□□ -0.91
CPNE3-201ENST00000517354 GPAT2Q6NUI2 795 aa9.38□□□□□ -0.91
CPNE3-201ENST00000517354 HDXQ7Z353 690 aa9.38□□□□□ -0.91
CPNE3-201ENST00000517354 NT5DC4Q86YG4 428 aa9.38□□□□□ -0.91
CPNE3-201ENST00000517354 UTP4Q969X6 686 aaKnown RBP9.38□□□□□ -0.91
CPNE3-201ENST00000517354 UBL7Q96S82 380 aaPredicted RBP9.38□□□□□ -0.91
CPNE3-201ENST00000517354 YIPF2Q9BWQ6 316 aa9.38□□□□□ -0.91
CPNE3-201ENST00000517354 PIDD1Q9HB75 910 aa9.38□□□□□ -0.91
CPNE3-201ENST00000517354 ADH5P11766 374 aa9.37□□□□□ -0.91
CPNE3-201ENST00000517354 HDLBPQ00341 1268 aaKnown RBP9.37□□□□□ -0.91
CPNE3-201ENST00000517354 CCDC84Q86UT8 332 aaPredicted RBP9.37□□□□□ -0.91
CPNE3-201ENST00000517354 ZNF654Q8IZM8 581 aa9.37□□□□□ -0.91
CPNE3-201ENST00000517354 GOLM1Q8NBJ4 401 aa9.37□□□□□ -0.91
CPNE3-201ENST00000517354 MEGF10Q96KG7 1140 aa9.37□□□□□ -0.91
CPNE3-201ENST00000517354 KCNF1Q9H3M0 494 aa9.37□□□□□ -0.91
CPNE3-201ENST00000517354 ATXN3LQ9H3M9 355 aa9.37□□□□□ -0.91
CPNE3-201ENST00000517354 SSU72Q9NP77 194 aaKnown RBP9.37□□□□□ -0.91
CPNE3-201ENST00000517354 CSADQ9Y600 493 aa9.37□□□□□ -0.91
CPNE3-201ENST00000517354 DCDC2CA8MYV0 355 aa9.36□□□□□ -0.91
CPNE3-201ENST00000517354 DHX15O43143 795 aaKnown RBP9.36□□□□□ -0.91
CPNE3-201ENST00000517354 RNGTTO60942 597 aaKnown RBP9.36□□□□□ -0.91
CPNE3-201ENST00000517354 IGSF3O75054 1194 aa9.36□□□□□ -0.91
CPNE3-201ENST00000517354 BMP3P12645 472 aa9.36□□□□□ -0.91
CPNE3-201ENST00000517354 PREPP48147 710 aa9.36□□□□□ -0.91
CPNE3-201ENST00000517354 UVSSAQ2YD98 709 aa9.36□□□□□ -0.91
CPNE3-201ENST00000517354 TRIM42Q8IWZ5 723 aa9.36□□□□□ -0.91
CPNE3-201ENST00000517354 DZIP1LQ8IYY4 767 aaKnown RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms