RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 HSPD1P10809 573 aaKnown RBP15.57■□□□□ 0.08
LIMCH1-220ENST00000514190 GNAT2P19087 354 aa15.57■□□□□ 0.08
LIMCH1-220ENST00000514190 DYNLL1P63167 89 aaKnown RBP15.57■□□□□ 0.08
LIMCH1-220ENST00000514190 VPS53Q5VIR6 699 aa15.57■□□□□ 0.08
LIMCH1-220ENST00000514190 KIAA0825Q8IV33 1275 aa15.57■□□□□ 0.08
LIMCH1-220ENST00000514190 LCORLQ8N3X6 602 aa15.57■□□□□ 0.08
LIMCH1-220ENST00000514190 AGBL3Q8NEM8 1001 aa15.57■□□□□ 0.08
LIMCH1-220ENST00000514190 TBC1D32Q96NH3 1257 aa15.57■□□□□ 0.08
LIMCH1-220ENST00000514190 PATL2C9JE40 543 aaKnown RBP15.56■□□□□ 0.08
LIMCH1-220ENST00000514190 RBM25P49756 843 aaKnown RBP15.56■□□□□ 0.08
LIMCH1-220ENST00000514190 SCNN1DP51172 638 aa15.56■□□□□ 0.08
LIMCH1-220ENST00000514190 CERS3Q8IU89 383 aa15.56■□□□□ 0.08
LIMCH1-220ENST00000514190 TEKT1Q969V4 418 aa15.56■□□□□ 0.08
LIMCH1-220ENST00000514190 NOL10Q9BSC4 688 aaKnown RBP15.56■□□□□ 0.08
LIMCH1-220ENST00000514190 AATFQ9NY61 560 aaKnown RBP eCLIP15.56■□□□□ 0.08
LIMCH1-220ENST00000514190 SERPINA10Q9UK55 444 aa15.56■□□□□ 0.08
LIMCH1-220ENST00000514190 ZBTB12Q9Y330 459 aaPredicted RBP15.56■□□□□ 0.08
LIMCH1-220ENST00000514190 DAGLAQ9Y4D2 1042 aa15.56■□□□□ 0.08
LIMCH1-220ENST00000514190 U3KPZ7 1027 aaPredicted RBP15.56■□□□□ 0.08
LIMCH1-220ENST00000514190 MYH7P12883 1935 aa15.55■□□□□ 0.08
LIMCH1-220ENST00000514190 RPAP1Q9BWH6 1393 aaPredicted RBP15.55■□□□□ 0.08
LIMCH1-220ENST00000514190 IQCA1LA6NCM1 817 aa15.55■□□□□ 0.08
LIMCH1-220ENST00000514190 FOXP2O15409 715 aa15.55■□□□□ 0.08
LIMCH1-220ENST00000514190 RPS12P25398 132 aaKnown RBP15.55■□□□□ 0.08
LIMCH1-220ENST00000514190 HSPA4P34932 840 aa15.55■□□□□ 0.08
LIMCH1-220ENST00000514190 BTDP43251 543 aa15.55■□□□□ 0.08
LIMCH1-220ENST00000514190 CRKP46108 304 aa15.55■□□□□ 0.08
LIMCH1-220ENST00000514190 MMP14P50281 582 aa15.55■□□□□ 0.08
LIMCH1-220ENST00000514190 APLP1P51693 650 aa15.55■□□□□ 0.08
LIMCH1-220ENST00000514190 NECTIN1Q15223 517 aa15.55■□□□□ 0.08
LIMCH1-220ENST00000514190 ALX1Q15699 326 aa15.55■□□□□ 0.08
LIMCH1-220ENST00000514190 GPC2Q8N158 579 aa15.55■□□□□ 0.08
LIMCH1-220ENST00000514190 ZDHHC15Q96MV8 337 aa15.55■□□□□ 0.08
LIMCH1-220ENST00000514190 RBM8AQ9Y5S9 174 aaKnown RBP15.55■□□□□ 0.08
LIMCH1-220ENST00000514190 SLC4A4Q9Y6R1 1079 aa15.55■□□□□ 0.08
LIMCH1-220ENST00000514190 GSG1L2A8MUP6 293 aa15.54■□□□□ 0.08
LIMCH1-220ENST00000514190 PRKAB2O43741 272 aa15.54■□□□□ 0.08
LIMCH1-220ENST00000514190 USP17L8P0C7I0 530 aa15.54■□□□□ 0.08
LIMCH1-220ENST00000514190 PLCG2P16885 1265 aa15.54■□□□□ 0.08
LIMCH1-220ENST00000514190 MCCP23508 829 aa15.54■□□□□ 0.08
LIMCH1-220ENST00000514190 APOBEC3HQ6NTF7 200 aaKnown RBP15.54■□□□□ 0.08
LIMCH1-220ENST00000514190 DPF2Q92785 391 aa15.54■□□□□ 0.08
LIMCH1-220ENST00000514190 KCNB2Q92953 911 aa15.54■□□□□ 0.08
LIMCH1-220ENST00000514190 CRNKL1Q9BZJ0 848 aaKnown RBP15.54■□□□□ 0.08
LIMCH1-220ENST00000514190 HDAC9Q9UKV0 1011 aa15.54■□□□□ 0.08
LIMCH1-220ENST00000514190 FGAP02671 866 aa15.53■□□□□ 0.08
LIMCH1-220ENST00000514190 APPP05067 770 aa15.53■□□□□ 0.08
LIMCH1-220ENST00000514190 RHBDL3P58872 404 aa15.53■□□□□ 0.08
LIMCH1-220ENST00000514190 IFNL3Q8IZI9 196 aa15.53■□□□□ 0.08
LIMCH1-220ENST00000514190 OGFOD1Q8N543 542 aa15.53■□□□□ 0.08
LIMCH1-220ENST00000514190 CTNNA3Q9UI47 895 aa15.53■□□□□ 0.08
LIMCH1-220ENST00000514190 GJA3Q9Y6H8 435 aa15.53■□□□□ 0.08
LIMCH1-220ENST00000514190 ANAPC15P60006 121 aa15.52■□□□□ 0.08
LIMCH1-220ENST00000514190 CFAP100Q494V2 611 aa15.52■□□□□ 0.08
LIMCH1-220ENST00000514190 GIMAP6Q6P9H5 292 aa15.52■□□□□ 0.08
LIMCH1-220ENST00000514190 SH3RF3Q8TEJ3 882 aaPredicted RBP15.52■□□□□ 0.08
LIMCH1-220ENST00000514190 NACAP1Q9BZK3 213 aa15.52■□□□□ 0.08
LIMCH1-220ENST00000514190 TAF1DQ9H5J8 278 aaPredicted RBP15.52■□□□□ 0.08
LIMCH1-220ENST00000514190 HACL1Q9UJ83 578 aa15.52■□□□□ 0.08
LIMCH1-220ENST00000514190 ZNF646O15015 1829 aaPredicted RBP15.52■□□□□ 0.07
LIMCH1-220ENST00000514190 MAST2Q6P0Q8 1798 aa15.52■□□□□ 0.07
LIMCH1-220ENST00000514190 SLC27A2O14975 620 aa15.51■□□□□ 0.07
LIMCH1-220ENST00000514190 GMPSP49915 693 aaPredicted RBP15.51■□□□□ 0.07
LIMCH1-220ENST00000514190 RBM5P52756 815 aaKnown RBP eCLIP15.51■□□□□ 0.07
LIMCH1-220ENST00000514190 ZNF280AP59817 542 aaPredicted RBP15.51■□□□□ 0.07
LIMCH1-220ENST00000514190 CREB3L3Q68CJ9 461 aa15.51■□□□□ 0.07
LIMCH1-220ENST00000514190 CDC42EP5Q6NZY7 148 aa15.51■□□□□ 0.07
LIMCH1-220ENST00000514190 MTMR14Q8NCE2 650 aa15.51■□□□□ 0.07
LIMCH1-220ENST00000514190 SDR42E1Q8WUS8 393 aa15.51■□□□□ 0.07
LIMCH1-220ENST00000514190 IL17RAQ96F46 866 aa15.51■□□□□ 0.07
LIMCH1-220ENST00000514190 EPB41L4AQ9HCS5 686 aaPredicted RBP15.51■□□□□ 0.07
LIMCH1-220ENST00000514190 ATP8A2Q9NTI2 1148 aa15.51■□□□□ 0.07
LIMCH1-220ENST00000514190 USP40Q9NVE5 1235 aa15.51■□□□□ 0.07
LIMCH1-220ENST00000514190 PALD1Q9ULE6 856 aa15.51■□□□□ 0.07
LIMCH1-220ENST00000514190 PSME4Q14997 1843 aa15.51■□□□□ 0.07
LIMCH1-220ENST00000514190 ZMYM6O95789 1325 aa15.5■□□□□ 0.07
LIMCH1-220ENST00000514190 POTEIP0CG38 1075 aa15.5■□□□□ 0.07
LIMCH1-220ENST00000514190 POTEJP0CG39 1038 aa15.5■□□□□ 0.07
LIMCH1-220ENST00000514190 EPHX2P34913 555 aa15.5■□□□□ 0.07
LIMCH1-220ENST00000514190 DLGAP5Q15398 846 aa15.5■□□□□ 0.07
LIMCH1-220ENST00000514190 TSGA10IPQ3SY00 556 aa15.5■□□□□ 0.07
LIMCH1-220ENST00000514190 RNF20Q5VTR2 975 aa15.5■□□□□ 0.07
LIMCH1-220ENST00000514190 CHADLQ6NUI6 762 aa15.5■□□□□ 0.07
LIMCH1-220ENST00000514190 TEX11Q8IYF3 940 aa15.5■□□□□ 0.07
LIMCH1-220ENST00000514190 RASEFQ8IZ41 740 aa15.5■□□□□ 0.07
LIMCH1-220ENST00000514190 PRMT6Q96LA8 375 aaPredicted RBP15.5■□□□□ 0.07
LIMCH1-220ENST00000514190 NAPBQ9H115 298 aa15.5■□□□□ 0.07
LIMCH1-220ENST00000514190 DCP1AQ9NPI6 582 aaPredicted RBP15.5■□□□□ 0.07
LIMCH1-220ENST00000514190 RBM19Q9Y4C8 960 aaKnown RBP15.5■□□□□ 0.07
LIMCH1-220ENST00000514190 PCDHAC2Q9Y5I4 1007 aa15.5■□□□□ 0.07
LIMCH1-220ENST00000514190 CYP21A2P08686 494 aa15.49■□□□□ 0.07
LIMCH1-220ENST00000514190 ZKSCAN1P17029 563 aaPredicted RBP15.49■□□□□ 0.07
LIMCH1-220ENST00000514190 USP5P45974 858 aa15.49■□□□□ 0.07
LIMCH1-220ENST00000514190 LDHDQ86WU2 507 aa15.49■□□□□ 0.07
LIMCH1-220ENST00000514190 DDRGK1Q96HY6 314 aa15.49■□□□□ 0.07
LIMCH1-220ENST00000514190 ZBED3Q96IU2 234 aaPredicted RBP15.49■□□□□ 0.07
LIMCH1-220ENST00000514190 KIF2CQ99661 725 aa15.49■□□□□ 0.07
LIMCH1-220ENST00000514190 MKRN1Q9UHC7 482 aaKnown RBP15.49■□□□□ 0.07
LIMCH1-220ENST00000514190 CNOT7Q9UIV1 285 aaKnown RBP15.49■□□□□ 0.07
LIMCH1-220ENST00000514190 SNX14Q9Y5W7 946 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms