RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 ABI1Q8IZP0 508 aa6.49□□□□□ -1.37
NUP54-212ENST00000513248 FBXL18Q96ME1 805 aa6.49□□□□□ -1.37
NUP54-212ENST00000513248 METTL22Q9BUU2 404 aaPredicted RBP6.49□□□□□ -1.37
NUP54-212ENST00000513248 SOX17Q9H6I2 414 aaPredicted RBP6.49□□□□□ -1.37
NUP54-212ENST00000513248 CYP4F12Q9HCS2 524 aa6.49□□□□□ -1.37
NUP54-212ENST00000513248 RNF19AQ9NV58 838 aa6.49□□□□□ -1.37
NUP54-212ENST00000513248 PODXL2Q9NZ53 605 aa6.49□□□□□ -1.37
NUP54-212ENST00000513248 SOX1O00570 391 aaPredicted RBP6.48□□□□□ -1.37
NUP54-212ENST00000513248 F13BP05160 661 aa6.48□□□□□ -1.37
NUP54-212ENST00000513248 ESRRAP11474 423 aaPredicted RBP6.48□□□□□ -1.37
NUP54-212ENST00000513248 GRM2Q14416 872 aa6.48□□□□□ -1.37
NUP54-212ENST00000513248 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.48□□□□□ -1.37
NUP54-212ENST00000513248 SGO2Q562F6 1265 aa6.48□□□□□ -1.37
NUP54-212ENST00000513248 CBLL1Q75N03 491 aa6.48□□□□□ -1.37
NUP54-212ENST00000513248 VSIG10LQ86VR7 867 aa6.48□□□□□ -1.37
NUP54-212ENST00000513248 OSBPL7Q9BZF2 842 aa6.48□□□□□ -1.37
NUP54-212ENST00000513248 CLEC4MQ9H2X3 399 aaPredicted RBP6.48□□□□□ -1.37
NUP54-212ENST00000513248 CCDC9Q9Y3X0 531 aaKnown RBP6.48□□□□□ -1.37
NUP54-212ENST00000513248 ITPKAP23677 461 aa6.47□□□□□ -1.37
NUP54-212ENST00000513248 DAB2P98082 770 aa6.47□□□□□ -1.37
NUP54-212ENST00000513248 PTPN12Q05209 780 aaKnown RBP6.47□□□□□ -1.37
NUP54-212ENST00000513248 PCDH1Q08174 1060 aa6.47□□□□□ -1.37
NUP54-212ENST00000513248 ANKRD24Q8TF21 1146 aa6.47□□□□□ -1.37
NUP54-212ENST00000513248 FRMD6Q96NE9 622 aa6.47□□□□□ -1.37
NUP54-212ENST00000513248 OSBPL1AQ9BXW6 950 aa6.47□□□□□ -1.37
NUP54-212ENST00000513248 ABCB6Q9NP58 842 aa6.47□□□□□ -1.37
NUP54-212ENST00000513248 NLRP2Q9NX02 1062 aa6.47□□□□□ -1.37
NUP54-212ENST00000513248 CCDC39Q9UFE4 941 aa6.47□□□□□ -1.37
NUP54-212ENST00000513248 TRAK1Q9UPV9 953 aa6.47□□□□□ -1.37
NUP54-212ENST00000513248 FAM95CA0A1B0GW59 222 aa6.46□□□□□ -1.38
NUP54-212ENST00000513248 GIPC1O14908 333 aa6.46□□□□□ -1.38
NUP54-212ENST00000513248 ZNF16P17020 682 aaPredicted RBP6.46□□□□□ -1.38
NUP54-212ENST00000513248 GNA15P30679 374 aa6.46□□□□□ -1.38
NUP54-212ENST00000513248 PAOXQ6QHF9 649 aa6.46□□□□□ -1.38
NUP54-212ENST00000513248 C12orf50Q8NA57 414 aaPredicted RBP6.46□□□□□ -1.38
NUP54-212ENST00000513248 C3orf58Q8NDZ4 430 aa6.46□□□□□ -1.38
NUP54-212ENST00000513248 DUSP9Q99956 384 aaKnown RBP6.46□□□□□ -1.38
NUP54-212ENST00000513248 KRTAP4-7Q9BYR0 210 aa6.46□□□□□ -1.38
NUP54-212ENST00000513248 ZNF576Q9H609 170 aa6.46□□□□□ -1.38
NUP54-212ENST00000513248 LOC100289279A0A1B0GTE1 492 aa6.45□□□□□ -1.38
NUP54-212ENST00000513248 TMEM238LA0A1B0GVL6 79 aa6.45□□□□□ -1.38
NUP54-212ENST00000513248 RXRBP28702 533 aa6.45□□□□□ -1.38
NUP54-212ENST00000513248 FGD1P98174 961 aa6.45□□□□□ -1.38
NUP54-212ENST00000513248 GSTM4Q03013 218 aa6.45□□□□□ -1.38
NUP54-212ENST00000513248 TMC4Q7Z404 712 aa6.45□□□□□ -1.38
NUP54-212ENST00000513248 FBXL6Q8N531 539 aa6.45□□□□□ -1.38
NUP54-212ENST00000513248 USP26Q9BXU7 913 aa6.45□□□□□ -1.38
NUP54-212ENST00000513248 BCO2Q9BYV7 579 aa6.45□□□□□ -1.38
NUP54-212ENST00000513248 ITGB5P18084 799 aa6.44□□□□□ -1.38
NUP54-212ENST00000513248 ATP2B2Q01814 1243 aa6.44□□□□□ -1.38
NUP54-212ENST00000513248 MRPL58Q14197 206 aaKnown RBP6.44□□□□□ -1.38
NUP54-212ENST00000513248 ZNF423Q2M1K9 1284 aa6.44□□□□□ -1.38
NUP54-212ENST00000513248 EXOSC6Q5RKV6 272 aaKnown RBP6.44□□□□□ -1.38
NUP54-212ENST00000513248 NXPE4Q6UWF7 544 aa6.44□□□□□ -1.38
NUP54-212ENST00000513248 NFXL1Q6ZNB6 911 aa6.44□□□□□ -1.38
NUP54-212ENST00000513248 EZH1Q92800 747 aaPredicted RBP6.44□□□□□ -1.38
NUP54-212ENST00000513248 ASIC4Q96FT7 647 aa6.44□□□□□ -1.38
NUP54-212ENST00000513248 BCL2L13Q9BXK5 485 aa6.44□□□□□ -1.38
NUP54-212ENST00000513248 SRCIN1Q9C0H9 1055 aa6.44□□□□□ -1.38
NUP54-212ENST00000513248 BSDC1Q9NW68 430 aaPredicted RBP6.44□□□□□ -1.38
NUP54-212ENST00000513248 PARP2Q9UGN5 583 aa6.44□□□□□ -1.38
NUP54-212ENST00000513248 AK5Q9Y6K8 562 aa6.44□□□□□ -1.38
NUP54-212ENST00000513248 CECR2Q9BXF3 1484 aa6.44□□□□□ -1.38
NUP54-212ENST00000513248 B3GALT4O96024 378 aa6.43□□□□□ -1.38
NUP54-212ENST00000513248 JUNBP17275 347 aaPredicted RBP6.43□□□□□ -1.38
NUP54-212ENST00000513248 LDLRAD1Q5T700 205 aa6.43□□□□□ -1.38
NUP54-212ENST00000513248 OGFOD2Q6N063 350 aa6.43□□□□□ -1.38
NUP54-212ENST00000513248 POU5F2Q8N7G0 328 aa6.43□□□□□ -1.38
NUP54-212ENST00000513248 AGBL5Q8NDL9 886 aa6.43□□□□□ -1.38
NUP54-212ENST00000513248 YIPF2Q9BWQ6 316 aa6.43□□□□□ -1.38
NUP54-212ENST00000513248 C12orf49Q9H741 205 aa6.43□□□□□ -1.38
NUP54-212ENST00000513248 EIF4G1Q04637 1599 aaKnown RBP6.43□□□□□ -1.38
NUP54-212ENST00000513248 CC2D2AQ9P2K1 1620 aa6.43□□□□□ -1.38
NUP54-212ENST00000513248 CYP26A1O43174 497 aa6.42□□□□□ -1.38
NUP54-212ENST00000513248 DLGAP3O95886 979 aa6.42□□□□□ -1.38
NUP54-212ENST00000513248 CTSHP09668 335 aa6.42□□□□□ -1.38
NUP54-212ENST00000513248 USP11P51784 963 aa6.42□□□□□ -1.38
NUP54-212ENST00000513248 FCGRTP55899 365 aa6.42□□□□□ -1.38
NUP54-212ENST00000513248 JAG1P78504 1218 aa6.42□□□□□ -1.38
NUP54-212ENST00000513248 RPS26P11Q5JNZ5 115 aaPredicted RBP6.42□□□□□ -1.38
NUP54-212ENST00000513248 DTHD1Q6ZMT9 781 aa6.42□□□□□ -1.38
NUP54-212ENST00000513248 ZAR1Q86SH2 424 aa6.42□□□□□ -1.38
NUP54-212ENST00000513248 C2CD4AQ8NCU7 369 aaPredicted RBP6.42□□□□□ -1.38
NUP54-212ENST00000513248 GIPC2Q8TF65 315 aa6.42□□□□□ -1.38
NUP54-212ENST00000513248 NRSN2Q9GZP1 204 aa6.42□□□□□ -1.38
NUP54-212ENST00000513248 PRKAG2Q9UGJ0 569 aa6.42□□□□□ -1.38
NUP54-212ENST00000513248 XRCC5P13010 732 aaKnown RBP6.41□□□□□ -1.38
NUP54-212ENST00000513248 SOX4Q06945 474 aaPredicted RBP6.41□□□□□ -1.38
NUP54-212ENST00000513248 NFKBIBQ15653 356 aa6.41□□□□□ -1.38
NUP54-212ENST00000513248 CDPF1Q6NVV7 123 aa6.41□□□□□ -1.38
NUP54-212ENST00000513248 DDX54Q8TDD1 881 aaKnown RBP6.41□□□□□ -1.38
NUP54-212ENST00000513248 FBLIM1Q8WUP2 373 aa6.41□□□□□ -1.38
NUP54-212ENST00000513248 PPP4R2Q9NY27 417 aa6.41□□□□□ -1.38
NUP54-212ENST00000513248 SPG7Q9UQ90 795 aa6.41□□□□□ -1.38
NUP54-212ENST00000513248 UNCXA6NJT0 531 aa6.4□□□□□ -1.38
NUP54-212ENST00000513248 CYP11A1P05108 521 aa6.4□□□□□ -1.38
NUP54-212ENST00000513248 VAMP1P23763 118 aa6.4□□□□□ -1.38
NUP54-212ENST00000513248 CYP27A1Q02318 531 aa6.4□□□□□ -1.38
NUP54-212ENST00000513248 FAAP100Q0VG06 881 aa6.4□□□□□ -1.38
NUP54-212ENST00000513248 POU4F3Q15319 338 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms