RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 KIF3CO14782 793 aa35.78■■■■□ 3.32
LIMCH1-211ENST00000509638 GGA3Q9NZ52 723 aa35.78■■■■□ 3.32
LIMCH1-211ENST00000509638 GPR75-ASB3A0A0A6YYF3 556 aa35.77■■■■□ 3.32
LIMCH1-211ENST00000509638 MYO1BO43795 1136 aa35.77■■■■□ 3.32
LIMCH1-211ENST00000509638 ZFYP08048 801 aaPredicted RBP35.77■■■■□ 3.32
LIMCH1-211ENST00000509638 UBE3CQ15386 1083 aa35.77■■■■□ 3.32
LIMCH1-211ENST00000509638 MIGA1Q8NAN2 632 aa35.77■■■■□ 3.32
LIMCH1-211ENST00000509638 POLR2AP24928 1970 aaKnown RBP35.77■■■■□ 3.32
LIMCH1-211ENST00000509638 RNF113AO15541 343 aaKnown RBP35.76■■■■□ 3.32
LIMCH1-211ENST00000509638 BMP2KLQ5H9B9 411 aa35.76■■■■□ 3.32
LIMCH1-211ENST00000509638 NOL10Q9BSC4 688 aaKnown RBP35.76■■■■□ 3.32
LIMCH1-211ENST00000509638 TDRD3Q9H7E2 651 aaKnown RBP35.76■■■■□ 3.32
LIMCH1-211ENST00000509638 AATFQ9NY61 560 aaKnown RBP eCLIP35.76■■■■□ 3.32
LIMCH1-211ENST00000509638 CLRN2A0PK11 232 aa35.76■■■■□ 3.31
LIMCH1-211ENST00000509638 FOCADQ5VW36 1801 aa35.75■■■■□ 3.31
LIMCH1-211ENST00000509638 ANGEL2Q5VTE6 544 aaKnown RBP35.75■■■■□ 3.31
LIMCH1-211ENST00000509638 LDHDQ86WU2 507 aa35.75■■■■□ 3.31
LIMCH1-211ENST00000509638 SPDYE2Q495Y8 402 aa35.74■■■■□ 3.31
LIMCH1-211ENST00000509638 CLEC11AQ9Y240 323 aa35.74■■■■□ 3.31
LIMCH1-211ENST00000509638 CDC42EP5Q6NZY7 148 aa35.73■■■■□ 3.31
LIMCH1-211ENST00000509638 ZC3H15Q8WU90 426 aaKnown RBP35.73■■■■□ 3.31
LIMCH1-211ENST00000509638 BAG3O95817 575 aa35.72■■■■□ 3.31
LIMCH1-211ENST00000509638 APPBP2Q92624 585 aa35.72■■■■□ 3.31
LIMCH1-211ENST00000509638 VEZTQ9HBM0 779 aa35.72■■■■□ 3.31
LIMCH1-211ENST00000509638 ZNF70Q9UC06 446 aaPredicted RBP35.72■■■■□ 3.31
LIMCH1-211ENST00000509638 DYNLL1P63167 89 aaKnown RBP35.72■■■■□ 3.31
LIMCH1-211ENST00000509638 USP40Q9NVE5 1235 aa35.72■■■■□ 3.31
LIMCH1-211ENST00000509638 CACNB3P54284 484 aa35.71■■■■□ 3.31
LIMCH1-211ENST00000509638 TICAM2Q86XR7 235 aa35.71■■■■□ 3.31
LIMCH1-211ENST00000509638 PITPNM2Q9BZ72 1349 aa35.7■■■■□ 3.31
LIMCH1-211ENST00000509638 MAGEB6P1A0A0J9YX57 407 aa35.7■■■■□ 3.31
LIMCH1-211ENST00000509638 RHBDL3P58872 404 aa35.7■■■■□ 3.31
LIMCH1-211ENST00000509638 SH3RF3Q8TEJ3 882 aaPredicted RBP35.7■■■■□ 3.31
LIMCH1-211ENST00000509638 RIOK1Q9BRS2 568 aaKnown RBP35.7■■■■□ 3.31
LIMCH1-211ENST00000509638 TMOD2Q9NZR1 351 aa35.7■■■■□ 3.31
LIMCH1-211ENST00000509638 PPP4CP60510 307 aa35.69■■■■□ 3.3
LIMCH1-211ENST00000509638 OSBP2Q969R2 916 aa35.69■■■■□ 3.3
LIMCH1-211ENST00000509638 PUS7LQ9H0K6 701 aaKnown RBP35.69■■■■□ 3.3
LIMCH1-211ENST00000509638 PGAP2Q9UHJ9 254 aa35.69■■■■□ 3.3
LIMCH1-211ENST00000509638 MBD4O95243 580 aa35.68■■■■□ 3.3
LIMCH1-211ENST00000509638 ZMYM1Q5SVZ6 1142 aa35.68■■■■□ 3.3
LIMCH1-211ENST00000509638 DIAPH3Q9NSV4 1193 aa35.68■■■■□ 3.3
LIMCH1-211ENST00000509638 SCAF8Q9UPN6 1271 aaKnown RBP35.68■■■■□ 3.3
LIMCH1-211ENST00000509638 PLCG2P16885 1265 aa35.68■■■■□ 3.3
LIMCH1-211ENST00000509638 CERS3Q8IU89 383 aa35.68■■■■□ 3.3
LIMCH1-211ENST00000509638 APOBEC3FQ8IUX4 373 aaKnown RBP35.68■■■■□ 3.3
LIMCH1-211ENST00000509638 DCPSQ96C86 337 aaKnown RBP35.68■■■■□ 3.3
LIMCH1-211ENST00000509638 NAV1Q8NEY1 1877 aa35.67■■■■□ 3.3
LIMCH1-211ENST00000509638 MAP1SQ66K74 1059 aaPredicted RBP35.67■■■■□ 3.3
LIMCH1-211ENST00000509638 LCORLQ8N3X6 602 aa35.67■■■■□ 3.3
LIMCH1-211ENST00000509638 AIDAQ96BJ3 306 aa35.67■■■■□ 3.3
LIMCH1-211ENST00000509638 FAM227BQ96M60 508 aa35.67■■■■□ 3.3
LIMCH1-211ENST00000509638 A0A0D9SFI3 127 aa35.66■■■■□ 3.3
LIMCH1-211ENST00000509638 M0R2C6 588 aa35.66■■■■□ 3.3
LIMCH1-211ENST00000509638 NMIQ13287 307 aaPredicted RBP35.66■■■■□ 3.3
LIMCH1-211ENST00000509638 TEX11Q8IYF3 940 aa35.66■■■■□ 3.3
LIMCH1-211ENST00000509638 SEC62Q99442 399 aaKnown RBP35.66■■■■□ 3.3
LIMCH1-211ENST00000509638 ARMT1Q9H993 441 aa35.66■■■■□ 3.3
LIMCH1-211ENST00000509638 HIP1O00291 1037 aa35.65■■■■□ 3.3
LIMCH1-211ENST00000509638 NFIAQ12857 509 aa35.65■■■■□ 3.3
LIMCH1-211ENST00000509638 TCP10L2B9ZVM9 353 aa35.64■■■■□ 3.3
LIMCH1-211ENST00000509638 WDHD1O75717 1129 aaPredicted RBP35.64■■■■□ 3.3
LIMCH1-211ENST00000509638 CHADLQ6NUI6 762 aa35.64■■■■□ 3.3
LIMCH1-211ENST00000509638 KRT26Q7Z3Y9 468 aa35.64■■■■□ 3.3
LIMCH1-211ENST00000509638 SULF1Q8IWU6 871 aa35.64■■■■□ 3.3
LIMCH1-211ENST00000509638 DDX60LQ5H9U9 1706 aaKnown RBP35.63■■■■□ 3.29
LIMCH1-211ENST00000509638 TNFAIP1Q13829 316 aa35.63■■■■□ 3.29
LIMCH1-211ENST00000509638 ADM5C9JUS6 153 aa35.62■■■■□ 3.29
LIMCH1-211ENST00000509638 GPAA1O43292 621 aa35.62■■■■□ 3.29
LIMCH1-211ENST00000509638 FKBP1CQ5VVH2 108 aa35.62■■■■□ 3.29
LIMCH1-211ENST00000509638 CNTNAP1P78357 1384 aa35.62■■■■□ 3.29
LIMCH1-211ENST00000509638 TOMM70O94826 608 aa35.61■■■■□ 3.29
LIMCH1-211ENST00000509638 PICALMQ13492 652 aa35.61■■■■□ 3.29
LIMCH1-211ENST00000509638 CWC27Q6UX04 472 aaKnown RBP35.61■■■■□ 3.29
LIMCH1-211ENST00000509638 IDI2Q9BXS1 227 aa35.61■■■■□ 3.29
LIMCH1-211ENST00000509638 GLIS2Q9BZE0 524 aaPredicted RBP35.61■■■■□ 3.29
LIMCH1-211ENST00000509638 DDX4Q9NQI0 724 aaKnown RBP35.61■■■■□ 3.29
LIMCH1-211ENST00000509638 HELLSQ9NRZ9 838 aa35.61■■■■□ 3.29
LIMCH1-211ENST00000509638 CHMLP26374 656 aa35.6■■■■□ 3.29
LIMCH1-211ENST00000509638 CRNKL1Q9BZJ0 848 aaKnown RBP35.6■■■■□ 3.29
LIMCH1-211ENST00000509638 FAM198AQ9UFP1 575 aa35.6■■■■□ 3.29
LIMCH1-211ENST00000509638 MYH1P12882 1939 aa35.6■■■■□ 3.29
LIMCH1-211ENST00000509638 CCDC129Q6ZRS4 1044 aa35.59■■■■□ 3.29
LIMCH1-211ENST00000509638 RBM46Q8TBY0 533 aaKnown RBP35.59■■■■□ 3.29
LIMCH1-211ENST00000509638 BAZ2AQ9UIF9 1905 aaKnown RBP35.59■■■■□ 3.29
LIMCH1-211ENST00000509638 TNNI2P48788 182 aa35.59■■■■□ 3.29
LIMCH1-211ENST00000509638 TCP10Q12799 353 aa35.59■■■■□ 3.29
LIMCH1-211ENST00000509638 SMC1BQ8NDV3 1235 aa35.59■■■■□ 3.29
LIMCH1-211ENST00000509638 TGFBRAP1Q8WUH2 860 aa35.59■■■■□ 3.29
LIMCH1-211ENST00000509638 DEFB129Q9H1M3 183 aa35.59■■■■□ 3.29
LIMCH1-211ENST00000509638 FLT1P17948 1338 aa35.58■■■■□ 3.29
LIMCH1-211ENST00000509638 RASA3Q14644 834 aa35.58■■■■□ 3.29
LIMCH1-211ENST00000509638 MCMDC2Q4G0Z9 681 aa35.58■■■■□ 3.29
LIMCH1-211ENST00000509638 CDC37L1Q7L3B6 337 aa35.58■■■■□ 3.29
LIMCH1-211ENST00000509638 STRBPQ96SI9 672 aaKnown RBP35.58■■■■□ 3.29
LIMCH1-211ENST00000509638 USP48Q86UV5 1035 aa35.57■■■■□ 3.28
LIMCH1-211ENST00000509638 FAM83AQ86UY5 434 aa35.57■■■■□ 3.28
LIMCH1-211ENST00000509638 MAPKAPK5Q8IW41 473 aa35.57■■■■□ 3.28
LIMCH1-211ENST00000509638 USP5P45974 858 aa35.56■■■■□ 3.28
LIMCH1-211ENST00000509638 ZNF589Q86UQ0 364 aaPredicted RBP35.56■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms