RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 NAPBQ9H115 298 aa20.8■□□□□ 0.92
CCHCR1-228ENST00000509552 RIOK3O14730 519 aaKnown RBP20.79■□□□□ 0.92
CCHCR1-228ENST00000509552 TMEM67Q5HYA8 995 aa20.79■□□□□ 0.92
CCHCR1-228ENST00000509552 KRT40Q6A162 431 aa20.79■□□□□ 0.92
CCHCR1-228ENST00000509552 JMYQ8N9B5 988 aa20.79■□□□□ 0.92
CCHCR1-228ENST00000509552 IGDCC4Q8TDY8 1250 aa20.79■□□□□ 0.92
CCHCR1-228ENST00000509552 BPIFA3Q9BQP9 254 aa20.79■□□□□ 0.92
CCHCR1-228ENST00000509552 NEDD4P46934 1319 aa20.79■□□□□ 0.92
CCHCR1-228ENST00000509552 RXRAP19793 462 aa20.79■□□□□ 0.92
CCHCR1-228ENST00000509552 IARSP41252 1262 aaKnown RBP20.79■□□□□ 0.92
CCHCR1-228ENST00000509552 SGMS1Q86VZ5 419 aa20.79■□□□□ 0.92
CCHCR1-228ENST00000509552 VPS37DQ86XT2 251 aa20.79■□□□□ 0.92
CCHCR1-228ENST00000509552 IFNL3Q8IZI9 196 aa20.79■□□□□ 0.92
CCHCR1-228ENST00000509552 MAGEB6Q8N7X4 407 aa20.79■□□□□ 0.92
CCHCR1-228ENST00000509552 CNNM2Q9H8M5 875 aa20.79■□□□□ 0.92
CCHCR1-228ENST00000509552 GOLGA8AA7E2F4 631 aa20.78■□□□□ 0.92
CCHCR1-228ENST00000509552 PFKFB1P16118 471 aa20.78■□□□□ 0.92
CCHCR1-228ENST00000509552 CDC27P30260 824 aa20.78■□□□□ 0.92
CCHCR1-228ENST00000509552 TPM4P67936 248 aa20.78■□□□□ 0.92
CCHCR1-228ENST00000509552 RBM6P78332 1123 aaKnown RBP20.78■□□□□ 0.92
CCHCR1-228ENST00000509552 AXDND1Q5T1B0 1012 aaPredicted RBP20.78■□□□□ 0.92
CCHCR1-228ENST00000509552 C16orf45Q96MC5 204 aaPredicted RBP20.78■□□□□ 0.92
CCHCR1-228ENST00000509552 COL14A1Q05707 1796 aaKnown RBP20.78■□□□□ 0.92
CCHCR1-228ENST00000509552 MBD4O95243 580 aa20.78■□□□□ 0.92
CCHCR1-228ENST00000509552 LIFRP42702 1097 aa20.78■□□□□ 0.92
CCHCR1-228ENST00000509552 TPD52L1Q16890 204 aaPredicted RBP20.78■□□□□ 0.92
CCHCR1-228ENST00000509552 PHKBQ93100 1093 aa20.78■□□□□ 0.92
CCHCR1-228ENST00000509552 AIFM3Q96NN9 605 aa20.78■□□□□ 0.92
CCHCR1-228ENST00000509552 LY9Q9HBG7 655 aa20.78■□□□□ 0.92
CCHCR1-228ENST00000509552 MYO5AQ9Y4I1 1855 aaKnown RBP20.78■□□□□ 0.92
CCHCR1-228ENST00000509552 LRP5O75197 1615 aa20.78■□□□□ 0.92
CCHCR1-228ENST00000509552 RASGRF1Q13972 1273 aa20.77■□□□□ 0.92
CCHCR1-228ENST00000509552 NKX2-3Q8TAU0 364 aa20.77■□□□□ 0.92
CCHCR1-228ENST00000509552 TSC1Q92574 1164 aa20.77■□□□□ 0.92
CCHCR1-228ENST00000509552 SLC12A7Q9Y666 1083 aa20.77■□□□□ 0.92
CCHCR1-228ENST00000509552 CCDC69A6NI79 296 aa20.77■□□□□ 0.92
CCHCR1-228ENST00000509552 PPP6R2O75170 966 aa20.77■□□□□ 0.92
CCHCR1-228ENST00000509552 TNNT1P13805 278 aa20.77■□□□□ 0.92
CCHCR1-228ENST00000509552 NLRP12P59046 1061 aa20.77■□□□□ 0.92
CCHCR1-228ENST00000509552 DPCR1Q3MIW9 517 aa20.77■□□□□ 0.92
CCHCR1-228ENST00000509552 SUSD4Q5VX71 490 aa20.77■□□□□ 0.92
CCHCR1-228ENST00000509552 FILIP1Q7Z7B0 1213 aa20.77■□□□□ 0.92
CCHCR1-228ENST00000509552 UTP14AQ9BVJ6 771 aaKnown RBP20.77■□□□□ 0.92
CCHCR1-228ENST00000509552 KRT23Q9C075 422 aa20.77■□□□□ 0.92
CCHCR1-228ENST00000509552 IFIT3O14879 490 aaKnown RBP20.76■□□□□ 0.91
CCHCR1-228ENST00000509552 MARCKSP29966 332 aaPredicted RBP20.76■□□□□ 0.91
CCHCR1-228ENST00000509552 EIF5P55010 431 aaKnown RBP20.76■□□□□ 0.91
CCHCR1-228ENST00000509552 TIGD1Q96MW7 591 aa20.76■□□□□ 0.91
CCHCR1-228ENST00000509552 NACAP1Q9BZK3 213 aa20.76■□□□□ 0.91
CCHCR1-228ENST00000509552 SENP2Q9HC62 589 aa20.76■□□□□ 0.91
CCHCR1-228ENST00000509552 ARAP2Q8WZ64 1704 aa20.76■□□□□ 0.91
CCHCR1-228ENST00000509552 GNAT2P19087 354 aa20.76■□□□□ 0.91
CCHCR1-228ENST00000509552 GSDMDP57764 484 aa20.76■□□□□ 0.91
CCHCR1-228ENST00000509552 ARMT1Q9H993 441 aa20.76■□□□□ 0.91
CCHCR1-228ENST00000509552 EPB41L4AQ9HCS5 686 aaPredicted RBP20.76■□□□□ 0.91
CCHCR1-228ENST00000509552 FAM177BA6PVY3 158 aa20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 SMTNL1A8MU46 457 aa20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 WDHD1O75717 1129 aaPredicted RBP20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 SYKP43405 635 aa20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 CTDSPL2Q05D32 466 aa20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 SSRP1Q08945 709 aaKnown RBP20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 NTRK3Q16288 839 aa20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 AKNAD1Q5T1N1 836 aa20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 MFSD6Q6ZSS7 791 aa20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 WASF1Q92558 559 aa20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 BCL2L12Q9HB09 334 aa20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 ZSWIM5Q9P217 1185 aa20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 TAOK2Q9UL54 1235 aa20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 SKILP12757 684 aa20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 IGHMBP2P38935 993 aaKnown RBP20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 CCDC152Q4G0S7 254 aa20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 ZNF710Q8N1W2 664 aa20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 CCDC87Q9NVE4 849 aa20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 PAXBP1Q9Y5B6 917 aa20.75■□□□□ 0.91
CCHCR1-228ENST00000509552 STK36Q9NRP7 1315 aa20.74■□□□□ 0.91
CCHCR1-228ENST00000509552 U2AF2P26368 475 aaKnown RBP eCLIP20.74■□□□□ 0.91
CCHCR1-228ENST00000509552 PARP10Q53GL7 1025 aa20.74■□□□□ 0.91
CCHCR1-228ENST00000509552 IMPACTQ9P2X3 320 aa20.74■□□□□ 0.91
CCHCR1-228ENST00000509552 BIN1O00499 593 aa20.73■□□□□ 0.91
CCHCR1-228ENST00000509552 TDO2P48775 406 aa20.73■□□□□ 0.91
CCHCR1-228ENST00000509552 SART3Q15020 963 aaKnown RBP20.73■□□□□ 0.91
CCHCR1-228ENST00000509552 MYL10Q9BUA6 226 aa20.73■□□□□ 0.91
CCHCR1-228ENST00000509552 SLC26A6Q9BXS9 759 aa20.73■□□□□ 0.91
CCHCR1-228ENST00000509552 INCENPQ9NQS7 918 aa20.73■□□□□ 0.91
CCHCR1-228ENST00000509552 SEC31BQ9NQW1 1179 aa20.73■□□□□ 0.91
CCHCR1-228ENST00000509552 PLCH1Q4KWH8 1693 aa20.73■□□□□ 0.91
CCHCR1-228ENST00000509552 MROH7-TTC4A0A0A0MT08 1334 aa20.73■□□□□ 0.91
CCHCR1-228ENST00000509552 GSG1L2A8MUP6 293 aa20.73■□□□□ 0.91
CCHCR1-228ENST00000509552 RANBP6O60518 1105 aaKnown RBP20.73■□□□□ 0.91
CCHCR1-228ENST00000509552 ARID5BQ14865 1188 aa20.73■□□□□ 0.91
CCHCR1-228ENST00000509552 FAM217BQ9NTX9 383 aaPredicted RBP20.73■□□□□ 0.91
CCHCR1-228ENST00000509552 PTPAQ15257 358 aa20.72■□□□□ 0.91
CCHCR1-228ENST00000509552 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.72■□□□□ 0.91
CCHCR1-228ENST00000509552 A0A0G2JS52 829 aa20.72■□□□□ 0.91
CCHCR1-228ENST00000509552 SNAP23O00161 211 aa20.72■□□□□ 0.91
CCHCR1-228ENST00000509552 CTIFO43310 598 aaKnown RBP20.72■□□□□ 0.91
CCHCR1-228ENST00000509552 SMC2O95347 1197 aa20.72■□□□□ 0.91
CCHCR1-228ENST00000509552 FMNL1O95466 1100 aaPredicted RBP20.72■□□□□ 0.91
CCHCR1-228ENST00000509552 INTS5Q6P9B9 1019 aaKnown RBP20.72■□□□□ 0.91
CCHCR1-228ENST00000509552 TOMM22Q9NS69 142 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms