RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 HSPA6P17066 643 aa13.87□□□□□ -0.19
LIMCH1-210ENST00000509454 BTDP43251 543 aa13.87□□□□□ -0.19
LIMCH1-210ENST00000509454 APLP1P51693 650 aa13.87□□□□□ -0.19
LIMCH1-210ENST00000509454 NUCB1Q02818 461 aa13.87□□□□□ -0.19
LIMCH1-210ENST00000509454 TNFAIP1Q13829 316 aa13.87□□□□□ -0.19
LIMCH1-210ENST00000509454 PRAMEF18Q5VWM3 479 aa13.87□□□□□ -0.19
LIMCH1-210ENST00000509454 MAGEB6Q8N7X4 407 aa13.87□□□□□ -0.19
LIMCH1-210ENST00000509454 HAUS7Q99871 368 aa13.87□□□□□ -0.19
LIMCH1-210ENST00000509454 MROH7-TTC4A0A0A0MT08 1334 aa13.87□□□□□ -0.19
LIMCH1-210ENST00000509454 TTC41PQ6P2S7 1318 aa13.87□□□□□ -0.19
LIMCH1-210ENST00000509454 CYP7A1P22680 504 aa13.86□□□□□ -0.19
LIMCH1-210ENST00000509454 TNNI2P48788 182 aa13.86□□□□□ -0.19
LIMCH1-210ENST00000509454 APOBEC3HQ6NTF7 200 aaKnown RBP13.86□□□□□ -0.19
LIMCH1-210ENST00000509454 CDCA5Q96FF9 252 aa13.86□□□□□ -0.19
LIMCH1-210ENST00000509454 CCDC136Q96JN2 1154 aa13.86□□□□□ -0.19
LIMCH1-210ENST00000509454 ABT1Q9ULW3 272 aaKnown RBP13.86□□□□□ -0.19
LIMCH1-210ENST00000509454 PASKQ96RG2 1323 aa13.86□□□□□ -0.19
LIMCH1-210ENST00000509454 ECM29Q5VYK3 1845 aa13.86□□□□□ -0.19
LIMCH1-210ENST00000509454 MYO5AQ9Y4I1 1855 aaKnown RBP13.85□□□□□ -0.19
LIMCH1-210ENST00000509454 GLRX3O76003 335 aaKnown RBP13.85□□□□□ -0.19
LIMCH1-210ENST00000509454 NF2P35240 595 aa13.85□□□□□ -0.19
LIMCH1-210ENST00000509454 TTLL12Q14166 644 aaPredicted RBP13.85□□□□□ -0.19
LIMCH1-210ENST00000509454 CDC42EP5Q6NZY7 148 aa13.85□□□□□ -0.19
LIMCH1-210ENST00000509454 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.85□□□□□ -0.19
LIMCH1-210ENST00000509454 DEFB129Q9H1M3 183 aa13.85□□□□□ -0.19
LIMCH1-210ENST00000509454 MAST2Q6P0Q8 1798 aa13.85□□□□□ -0.19
LIMCH1-210ENST00000509454 GAKO14976 1311 aa13.85□□□□□ -0.19
LIMCH1-210ENST00000509454 TMEM88BA6NKF7 163 aa13.85□□□□□ -0.19
LIMCH1-210ENST00000509454 BAG3O95817 575 aa13.85□□□□□ -0.19
LIMCH1-210ENST00000509454 HTRA3P83110 453 aa13.85□□□□□ -0.19
LIMCH1-210ENST00000509454 RASA3Q14644 834 aa13.85□□□□□ -0.19
LIMCH1-210ENST00000509454 SLC9C2Q5TAH2 1124 aa13.85□□□□□ -0.19
LIMCH1-210ENST00000509454 AATFQ9NY61 560 aaKnown RBP eCLIP13.85□□□□□ -0.19
LIMCH1-210ENST00000509454 PDE1AP54750 535 aa13.84□□□□□ -0.19
LIMCH1-210ENST00000509454 TCP10Q12799 353 aa13.84□□□□□ -0.19
LIMCH1-210ENST00000509454 PICALMQ13492 652 aa13.84□□□□□ -0.19
LIMCH1-210ENST00000509454 PRKG1Q13976 671 aa13.84□□□□□ -0.19
LIMCH1-210ENST00000509454 PAXIP1Q6ZW49 1069 aaPredicted RBP13.84□□□□□ -0.19
LIMCH1-210ENST00000509454 MIGA1Q8NAN2 632 aa13.84□□□□□ -0.19
LIMCH1-210ENST00000509454 ZNF384Q8TF68 577 aa13.84□□□□□ -0.19
LIMCH1-210ENST00000509454 FAM163AQ96GL9 167 aaPredicted RBP13.84□□□□□ -0.19
LIMCH1-210ENST00000509454 TRPM7Q96QT4 1865 aa13.83□□□□□ -0.2
LIMCH1-210ENST00000509454 GPR75-ASB3A0A0A6YYF3 556 aa13.83□□□□□ -0.2
LIMCH1-210ENST00000509454 PDE6AP16499 860 aa13.83□□□□□ -0.2
LIMCH1-210ENST00000509454 TEX11Q8IYF3 940 aa13.83□□□□□ -0.2
LIMCH1-210ENST00000509454 C2orf69Q8N8R5 385 aa13.83□□□□□ -0.2
LIMCH1-210ENST00000509454 PI4K2BQ8TCG2 481 aa13.83□□□□□ -0.2
LIMCH1-210ENST00000509454 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.83□□□□□ -0.2
LIMCH1-210ENST00000509454 PPP2R3BQ9Y5P8 575 aa13.83□□□□□ -0.2
LIMCH1-210ENST00000509454 ZNF532Q9HCE3 1301 aa13.82□□□□□ -0.2
LIMCH1-210ENST00000509454 TRIM6-TRIM34B2RNG4 842 aa13.82□□□□□ -0.2
LIMCH1-210ENST00000509454 IGSF3O75054 1194 aa13.82□□□□□ -0.2
LIMCH1-210ENST00000509454 PLCG2P16885 1265 aa13.82□□□□□ -0.2
LIMCH1-210ENST00000509454 CST9Q5W186 159 aa13.82□□□□□ -0.2
LIMCH1-210ENST00000509454 ZSCAN25Q6NSZ9 544 aa13.82□□□□□ -0.2
LIMCH1-210ENST00000509454 ADGRA1Q86SQ6 560 aa13.82□□□□□ -0.2
LIMCH1-210ENST00000509454 ZSCAN29Q8IWY8 852 aaPredicted RBP13.82□□□□□ -0.2
LIMCH1-210ENST00000509454 FSD1Q9BTV5 496 aa13.82□□□□□ -0.2
LIMCH1-210ENST00000509454 TMEM39BQ9GZU3 492 aa13.82□□□□□ -0.2
LIMCH1-210ENST00000509454 GBA2Q9HCG7 927 aaPredicted RBP13.82□□□□□ -0.2
LIMCH1-210ENST00000509454 CREBZFQ9NS37 354 aa13.82□□□□□ -0.2
LIMCH1-210ENST00000509454 DOCK2Q92608 1830 aa13.81□□□□□ -0.2
LIMCH1-210ENST00000509454 MAGEB6P1A0A0J9YX57 407 aa13.81□□□□□ -0.2
LIMCH1-210ENST00000509454 RGS3P49796 1198 aa13.81□□□□□ -0.2
LIMCH1-210ENST00000509454 DYNLL1P63167 89 aaKnown RBP13.81□□□□□ -0.2
LIMCH1-210ENST00000509454 NFIAQ12857 509 aa13.81□□□□□ -0.2
LIMCH1-210ENST00000509454 SUPT20HL1Q3ZLR7 823 aa13.81□□□□□ -0.2
LIMCH1-210ENST00000509454 CENPQQ7L2Z9 268 aaPredicted RBP13.81□□□□□ -0.2
LIMCH1-210ENST00000509454 SH3RF3Q8TEJ3 882 aaPredicted RBP13.81□□□□□ -0.2
LIMCH1-210ENST00000509454 STAP2Q9UGK3 403 aa13.81□□□□□ -0.2
LIMCH1-210ENST00000509454 AK9Q5TCS8 1911 aa13.81□□□□□ -0.2
LIMCH1-210ENST00000509454 SALL3Q9BXA9 1300 aa13.81□□□□□ -0.2
LIMCH1-210ENST00000509454 GRM1Q13255 1194 aa13.8□□□□□ -0.2
LIMCH1-210ENST00000509454 LRRFIP1Q32MZ4 808 aaKnown RBP13.8□□□□□ -0.2
LIMCH1-210ENST00000509454 NBPF12Q5TAG4 269 aaPredicted RBP13.8□□□□□ -0.2
LIMCH1-210ENST00000509454 PLEKHM2Q8IWE5 1019 aa13.8□□□□□ -0.2
LIMCH1-210ENST00000509454 RILPL2Q969X0 211 aa13.8□□□□□ -0.2
LIMCH1-210ENST00000509454 USP5P45974 858 aa13.8□□□□□ -0.2
LIMCH1-210ENST00000509454 HUNKP57058 714 aa13.8□□□□□ -0.2
LIMCH1-210ENST00000509454 RHBDL3P58872 404 aa13.8□□□□□ -0.2
LIMCH1-210ENST00000509454 SLFNL1Q499Z3 407 aa13.8□□□□□ -0.2
LIMCH1-210ENST00000509454 FKBP1CQ5VVH2 108 aa13.8□□□□□ -0.2
LIMCH1-210ENST00000509454 TMED8Q6PL24 325 aaPredicted RBP13.8□□□□□ -0.2
LIMCH1-210ENST00000509454 ARMC9Q7Z3E5 817 aa13.8□□□□□ -0.2
LIMCH1-210ENST00000509454 FAM83AQ86UY5 434 aa13.8□□□□□ -0.2
LIMCH1-210ENST00000509454 KBTBD3Q8NAB2 608 aa13.8□□□□□ -0.2
LIMCH1-210ENST00000509454 TGFBRAP1Q8WUH2 860 aa13.8□□□□□ -0.2
LIMCH1-210ENST00000509454 MKRN1Q9UHC7 482 aaKnown RBP13.8□□□□□ -0.2
LIMCH1-210ENST00000509454 CNTNAP1P78357 1384 aa13.79□□□□□ -0.2
LIMCH1-210ENST00000509454 PPP1R12BO60237 982 aaPredicted RBP13.79□□□□□ -0.2
LIMCH1-210ENST00000509454 ADD2P35612 726 aa13.79□□□□□ -0.2
LIMCH1-210ENST00000509454 MOB2Q70IA6 237 aa13.79□□□□□ -0.2
LIMCH1-210ENST00000509454 MAPKAPK5Q8IW41 473 aa13.79□□□□□ -0.2
LIMCH1-210ENST00000509454 CDAN1Q8IWY9 1227 aa13.79□□□□□ -0.2
LIMCH1-210ENST00000509454 FAM151AQ8WW52 585 aa13.79□□□□□ -0.2
LIMCH1-210ENST00000509454 FAM198AQ9UFP1 575 aa13.79□□□□□ -0.2
LIMCH1-210ENST00000509454 ANGEL1Q9UNK9 670 aaKnown RBP13.79□□□□□ -0.2
LIMCH1-210ENST00000509454 FZD1Q9UP38 647 aa13.79□□□□□ -0.2
LIMCH1-210ENST00000509454 MYH7P12883 1935 aa13.78□□□□□ -0.2
LIMCH1-210ENST00000509454 UBE2Q2LH0YL09 131 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms