RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 MAP3K9P80192 1104 aa16.16■□□□□ 0.18
HMGCS1-205ENST00000508319 CRHR2Q13324 411 aa16.16■□□□□ 0.18
HMGCS1-205ENST00000508319 CCDC102BQ68D86 513 aa16.16■□□□□ 0.18
HMGCS1-205ENST00000508319 DOCK2Q92608 1830 aa16.15■□□□□ 0.18
HMGCS1-205ENST00000508319 IPO8O15397 1037 aaKnown RBP16.15■□□□□ 0.18
HMGCS1-205ENST00000508319 LDHBP07195 334 aaKnown RBP16.15■□□□□ 0.18
HMGCS1-205ENST00000508319 RASGRF1Q13972 1273 aa16.15■□□□□ 0.18
HMGCS1-205ENST00000508319 FBXO46Q6PJ61 603 aaPredicted RBP16.15■□□□□ 0.18
HMGCS1-205ENST00000508319 FRAT1Q92837 279 aaPredicted RBP16.15■□□□□ 0.18
HMGCS1-205ENST00000508319 OTUD5Q96G74 571 aa16.15■□□□□ 0.18
HMGCS1-205ENST00000508319 WRNIP1Q96S55 665 aa16.15■□□□□ 0.18
HMGCS1-205ENST00000508319 DENND2AQ9ULE3 1009 aa16.15■□□□□ 0.18
HMGCS1-205ENST00000508319 CSADQ9Y600 493 aa16.15■□□□□ 0.18
HMGCS1-205ENST00000508319 SNCAIPQ9Y6H5 919 aa16.15■□□□□ 0.18
HMGCS1-205ENST00000508319 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.15■□□□□ 0.18
HMGCS1-205ENST00000508319 AK9Q5TCS8 1911 aa16.14■□□□□ 0.17
HMGCS1-205ENST00000508319 A0A1B0GUL7 405 aa16.14■□□□□ 0.17
HMGCS1-205ENST00000508319 SPDYE5A6NIY4 337 aa16.14■□□□□ 0.17
HMGCS1-205ENST00000508319 NFIAQ12857 509 aa16.14■□□□□ 0.17
HMGCS1-205ENST00000508319 OTUD7BQ6GQQ9 843 aa16.14■□□□□ 0.17
HMGCS1-205ENST00000508319 CDC42EP5Q6NZY7 148 aa16.14■□□□□ 0.17
HMGCS1-205ENST00000508319 BRI3BPQ8WY22 251 aa16.14■□□□□ 0.17
HMGCS1-205ENST00000508319 CLUAP1Q96AJ1 413 aa16.14■□□□□ 0.17
HMGCS1-205ENST00000508319 BRCA2P51587 3418 aa16.14■□□□□ 0.17
HMGCS1-205ENST00000508319 PDS5AQ29RF7 1337 aaKnown RBP16.14■□□□□ 0.17
HMGCS1-205ENST00000508319 RFX7Q2KHR2 1363 aa16.13■□□□□ 0.17
HMGCS1-205ENST00000508319 TIMM10P62072 90 aa16.13■□□□□ 0.17
HMGCS1-205ENST00000508319 TFCP2Q12800 502 aa16.13■□□□□ 0.17
HMGCS1-205ENST00000508319 FAM151AQ8WW52 585 aa16.13■□□□□ 0.17
HMGCS1-205ENST00000508319 ZKSCAN4Q969J2 545 aaPredicted RBP16.13■□□□□ 0.17
HMGCS1-205ENST00000508319 HOOK2Q96ED9 719 aa16.13■□□□□ 0.17
HMGCS1-205ENST00000508319 FAM198AQ9UFP1 575 aa16.13■□□□□ 0.17
HMGCS1-205ENST00000508319 CCL15-CCL14A0A0B4J2E2 113 aa16.12■□□□□ 0.17
HMGCS1-205ENST00000508319 PNMA6EA0A0J9YXQ4 647 aa16.12■□□□□ 0.17
HMGCS1-205ENST00000508319 GNAI2P04899 355 aa16.12■□□□□ 0.17
HMGCS1-205ENST00000508319 GTF2A2P52657 109 aa16.12■□□□□ 0.17
HMGCS1-205ENST00000508319 CCL15Q16663 113 aa16.12■□□□□ 0.17
HMGCS1-205ENST00000508319 DCAF15Q66K64 600 aa16.12■□□□□ 0.17
HMGCS1-205ENST00000508319 OTOP1Q7RTM1 612 aa16.12■□□□□ 0.17
HMGCS1-205ENST00000508319 MIER1Q8N108 512 aa16.12■□□□□ 0.17
HMGCS1-205ENST00000508319 ZGPATQ8N5A5 531 aaKnown RBP16.12■□□□□ 0.17
HMGCS1-205ENST00000508319 XAGE2Q96GT9 111 aa16.12■□□□□ 0.17
HMGCS1-205ENST00000508319 GAKO14976 1311 aa16.12■□□□□ 0.17
HMGCS1-205ENST00000508319 HNRNPUQ00839 825 aaKnown RBP eCLIP16.11■□□□□ 0.17
HMGCS1-205ENST00000508319 CAP1Q01518 475 aa16.11■□□□□ 0.17
HMGCS1-205ENST00000508319 TCP10Q12799 353 aa16.11■□□□□ 0.17
HMGCS1-205ENST00000508319 ZKSCAN2Q63HK3 967 aa16.11■□□□□ 0.17
HMGCS1-205ENST00000508319 MIGA2Q7L4E1 593 aa16.11■□□□□ 0.17
HMGCS1-205ENST00000508319 ERO1BQ86YB8 467 aa16.11■□□□□ 0.17
HMGCS1-205ENST00000508319 TMEM57Q8N5G2 664 aa16.11■□□□□ 0.17
HMGCS1-205ENST00000508319 AKAP2Q9Y2D5 859 aa16.11■□□□□ 0.17
HMGCS1-205ENST00000508319 TRIM17Q9Y577 477 aa16.11■□□□□ 0.17
HMGCS1-205ENST00000508319 ATRNL1Q5VV63 1379 aa16.11■□□□□ 0.17
HMGCS1-205ENST00000508319 IRF6O14896 467 aa16.1■□□□□ 0.17
HMGCS1-205ENST00000508319 INPP5BP32019 993 aa16.1■□□□□ 0.17
HMGCS1-205ENST00000508319 MVPQ14764 893 aaKnown RBP16.1■□□□□ 0.17
HMGCS1-205ENST00000508319 FAM43AQ8N2R8 423 aa16.1■□□□□ 0.17
HMGCS1-205ENST00000508319 CD99L2Q8TCZ2 262 aa16.1■□□□□ 0.17
HMGCS1-205ENST00000508319 ERO1AQ96HE7 468 aa16.1■□□□□ 0.17
HMGCS1-205ENST00000508319 ZNF341Q9BYN7 854 aa16.1■□□□□ 0.17
HMGCS1-205ENST00000508319 USP40Q9NVE5 1235 aa16.1■□□□□ 0.17
HMGCS1-205ENST00000508319 PPIL2Q13356 520 aa16.09■□□□□ 0.17
HMGCS1-205ENST00000508319 TAF1CQ15572 869 aaPredicted RBP16.09■□□□□ 0.17
HMGCS1-205ENST00000508319 DZIP1Q86YF9 867 aaKnown RBP16.09■□□□□ 0.17
HMGCS1-205ENST00000508319 ZFPM1Q8IX07 1006 aa16.09■□□□□ 0.17
HMGCS1-205ENST00000508319 ABCF2Q9UG63 623 aa16.09■□□□□ 0.17
HMGCS1-205ENST00000508319 ZNF112Q9UJU3 913 aa16.09■□□□□ 0.17
HMGCS1-205ENST00000508319 ZSWIM8A7E2V4 1837 aa16.09■□□□□ 0.17
HMGCS1-205ENST00000508319 MKI67P46013 3256 aaKnown RBP16.09■□□□□ 0.17
HMGCS1-205ENST00000508319 SP3Q02447 781 aa16.08■□□□□ 0.16
HMGCS1-205ENST00000508319 SNAPC2Q13487 334 aa16.08■□□□□ 0.16
HMGCS1-205ENST00000508319 DIEXFQ68CQ4 756 aaKnown RBP16.08■□□□□ 0.16
HMGCS1-205ENST00000508319 PI16Q6UXB8 463 aa16.08■□□□□ 0.16
HMGCS1-205ENST00000508319 ZNF384Q8TF68 577 aa16.08■□□□□ 0.16
HMGCS1-205ENST00000508319 IDI2Q9BXS1 227 aa16.08■□□□□ 0.16
HMGCS1-205ENST00000508319 MAST2Q6P0Q8 1798 aa16.08■□□□□ 0.16
HMGCS1-205ENST00000508319 RBBP6Q7Z6E9 1792 aaKnown RBP16.08■□□□□ 0.16
HMGCS1-205ENST00000508319 BTBD19C9JJ37 291 aa16.07■□□□□ 0.16
HMGCS1-205ENST00000508319 CETPP11597 493 aa16.07■□□□□ 0.16
HMGCS1-205ENST00000508319 ARID4AP29374 1257 aaPredicted RBP16.07■□□□□ 0.16
HMGCS1-205ENST00000508319 RGS3P49796 1198 aa16.07■□□□□ 0.16
HMGCS1-205ENST00000508319 PPATQ06203 517 aa16.07■□□□□ 0.16
HMGCS1-205ENST00000508319 POLA2Q14181 598 aa16.07■□□□□ 0.16
HMGCS1-205ENST00000508319 NOL9Q5SY16 702 aaKnown RBP16.07■□□□□ 0.16
HMGCS1-205ENST00000508319 FAM163AQ96GL9 167 aaPredicted RBP16.07■□□□□ 0.16
HMGCS1-205ENST00000508319 NEUROD6Q96NK8 337 aa16.07■□□□□ 0.16
HMGCS1-205ENST00000508319 ZFYVE28Q9HCC9 887 aa16.07■□□□□ 0.16
HMGCS1-205ENST00000508319 ZCCHC17Q9NP64 241 aaKnown RBP16.07■□□□□ 0.16
HMGCS1-205ENST00000508319 HMG20BQ9P0W2 317 aa16.07■□□□□ 0.16
HMGCS1-205ENST00000508319 MROH7-TTC4A0A0A0MT08 1334 aa16.07■□□□□ 0.16
HMGCS1-205ENST00000508319 KIAA0100Q14667 2235 aaKnown RBP16.07■□□□□ 0.16
HMGCS1-205ENST00000508319 DOCK1Q14185 1865 aa16.06■□□□□ 0.16
HMGCS1-205ENST00000508319 WDHD1O75717 1129 aaPredicted RBP16.06■□□□□ 0.16
HMGCS1-205ENST00000508319 BTDP43251 543 aa16.06■□□□□ 0.16
HMGCS1-205ENST00000508319 MECOMQ03112 1051 aa16.06■□□□□ 0.16
HMGCS1-205ENST00000508319 C1QBPQ07021 282 aaKnown RBP16.06■□□□□ 0.16
HMGCS1-205ENST00000508319 SPTY2D1Q68D10 685 aaPredicted RBP16.06■□□□□ 0.16
HMGCS1-205ENST00000508319 PPP4R3CPQ6ZMV5 832 aa16.06■□□□□ 0.16
HMGCS1-205ENST00000508319 SH3BP5LQ7L8J4 393 aa16.06■□□□□ 0.16
HMGCS1-205ENST00000508319 EFCC1Q9HA90 598 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 131.3 ms