RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 GREB1LQ9C091 1923 aaPredicted RBP8.65□□□□□ -1.02
NUP54-204ENST00000506098 M0R2C6 588 aa8.65□□□□□ -1.02
NUP54-204ENST00000506098 REC8O95072 547 aa8.65□□□□□ -1.02
NUP54-204ENST00000506098 ZNF589Q86UQ0 364 aaPredicted RBP8.65□□□□□ -1.02
NUP54-204ENST00000506098 GPC2Q8N158 579 aa8.65□□□□□ -1.02
NUP54-204ENST00000506098 MTMR14Q8NCE2 650 aa8.65□□□□□ -1.02
NUP54-204ENST00000506098 ZDHHC15Q96MV8 337 aa8.65□□□□□ -1.02
NUP54-204ENST00000506098 STRBPQ96SI9 672 aaKnown RBP8.65□□□□□ -1.02
NUP54-204ENST00000506098 USP26Q9BXU7 913 aa8.65□□□□□ -1.02
NUP54-204ENST00000506098 LSG1Q9H089 658 aaKnown RBP8.65□□□□□ -1.02
NUP54-204ENST00000506098 RNF181Q9P0P0 153 aa8.65□□□□□ -1.02
NUP54-204ENST00000506098 ZMYM6O95789 1325 aa8.64□□□□□ -1.03
NUP54-204ENST00000506098 MAGEB6P1A0A0J9YX57 407 aa8.64□□□□□ -1.03
NUP54-204ENST00000506098 GPAA1O43292 621 aa8.64□□□□□ -1.03
NUP54-204ENST00000506098 HSPD1P10809 573 aaKnown RBP8.64□□□□□ -1.03
NUP54-204ENST00000506098 GNAT2P19087 354 aa8.64□□□□□ -1.03
NUP54-204ENST00000506098 CRKP46108 304 aa8.64□□□□□ -1.03
NUP54-204ENST00000506098 ZNF280AP59817 542 aaPredicted RBP8.64□□□□□ -1.03
NUP54-204ENST00000506098 DIXDC1Q155Q3 683 aa8.64□□□□□ -1.03
NUP54-204ENST00000506098 ALX1Q15699 326 aa8.64□□□□□ -1.03
NUP54-204ENST00000506098 KIAA0825Q8IV33 1275 aa8.64□□□□□ -1.03
NUP54-204ENST00000506098 MAP4K1Q92918 833 aa8.64□□□□□ -1.03
NUP54-204ENST00000506098 TEKT1Q969V4 418 aa8.64□□□□□ -1.03
NUP54-204ENST00000506098 AIDAQ96BJ3 306 aa8.64□□□□□ -1.03
NUP54-204ENST00000506098 ZBED3Q96IU2 234 aaPredicted RBP8.64□□□□□ -1.03
NUP54-204ENST00000506098 DSCC1Q9BVC3 393 aa8.64□□□□□ -1.03
NUP54-204ENST00000506098 HDAC9Q9UKV0 1011 aa8.64□□□□□ -1.03
NUP54-204ENST00000506098 ZBTB12Q9Y330 459 aaPredicted RBP8.64□□□□□ -1.03
NUP54-204ENST00000506098 DAGLAQ9Y4D2 1042 aa8.64□□□□□ -1.03
NUP54-204ENST00000506098 PATL2C9JE40 543 aaKnown RBP8.63□□□□□ -1.03
NUP54-204ENST00000506098 F8W031 263 aaPredicted RBP8.63□□□□□ -1.03
NUP54-204ENST00000506098 FOXP2O15409 715 aa8.63□□□□□ -1.03
NUP54-204ENST00000506098 MBD4O95243 580 aa8.63□□□□□ -1.03
NUP54-204ENST00000506098 BAG3O95817 575 aa8.63□□□□□ -1.03
NUP54-204ENST00000506098 USP17L8P0C7I0 530 aa8.63□□□□□ -1.03
NUP54-204ENST00000506098 PLCG2P16885 1265 aa8.63□□□□□ -1.03
NUP54-204ENST00000506098 BTDP43251 543 aa8.63□□□□□ -1.03
NUP54-204ENST00000506098 SCNN1DP51172 638 aa8.63□□□□□ -1.03
NUP54-204ENST00000506098 RHBDL3P58872 404 aa8.63□□□□□ -1.03
NUP54-204ENST00000506098 DYNLL1P63167 89 aaKnown RBP8.63□□□□□ -1.03
NUP54-204ENST00000506098 PTH1RQ03431 593 aa8.63□□□□□ -1.03
NUP54-204ENST00000506098 APOBEC3HQ6NTF7 200 aaKnown RBP8.63□□□□□ -1.03
NUP54-204ENST00000506098 CCDC129Q6ZRS4 1044 aa8.63□□□□□ -1.03
NUP54-204ENST00000506098 KIAA1211Q6ZU35 1233 aa8.63□□□□□ -1.03
NUP54-204ENST00000506098 LCORLQ8N3X6 602 aa8.63□□□□□ -1.03
NUP54-204ENST00000506098 OGFOD1Q8N543 542 aa8.63□□□□□ -1.03
NUP54-204ENST00000506098 NOL10Q9BSC4 688 aaKnown RBP8.63□□□□□ -1.03
NUP54-204ENST00000506098 ARMT1Q9H993 441 aa8.63□□□□□ -1.03
NUP54-204ENST00000506098 AATFQ9NY61 560 aaKnown RBP eCLIP8.63□□□□□ -1.03
NUP54-204ENST00000506098 PHIPQ8WWQ0 1821 aa8.62□□□□□ -1.03
NUP54-204ENST00000506098 GSG1L2A8MUP6 293 aa8.62□□□□□ -1.03
NUP54-204ENST00000506098 PDIA4P13667 645 aaKnown RBP8.62□□□□□ -1.03
NUP54-204ENST00000506098 GMPSP49915 693 aaPredicted RBP8.62□□□□□ -1.03
NUP54-204ENST00000506098 NECTIN1Q15223 517 aa8.62□□□□□ -1.03
NUP54-204ENST00000506098 CFAP100Q494V2 611 aa8.62□□□□□ -1.03
NUP54-204ENST00000506098 VPS53Q5VIR6 699 aa8.62□□□□□ -1.03
NUP54-204ENST00000506098 DPY19L2Q6NUT2 758 aa8.62□□□□□ -1.03
NUP54-204ENST00000506098 GIMAP6Q6P9H5 292 aa8.62□□□□□ -1.03
NUP54-204ENST00000506098 MIGA1Q8NAN2 632 aa8.62□□□□□ -1.03
NUP54-204ENST00000506098 KCNB2Q92953 911 aa8.62□□□□□ -1.03
NUP54-204ENST00000506098 IL17RAQ96F46 866 aa8.62□□□□□ -1.03
NUP54-204ENST00000506098 L3MBTL3Q96JM7 780 aaPredicted RBP8.62□□□□□ -1.03
NUP54-204ENST00000506098 CRNKL1Q9BZJ0 848 aaKnown RBP8.62□□□□□ -1.03
NUP54-204ENST00000506098 ANO2Q9NQ90 1003 aa8.62□□□□□ -1.03
NUP54-204ENST00000506098 ATP8A2Q9NTI2 1148 aa8.62□□□□□ -1.03
NUP54-204ENST00000506098 GPRC5DQ9NZD1 345 aa8.62□□□□□ -1.03
NUP54-204ENST00000506098 MKRN1Q9UHC7 482 aaKnown RBP8.62□□□□□ -1.03
NUP54-204ENST00000506098 CNOT7Q9UIV1 285 aaKnown RBP8.62□□□□□ -1.03
NUP54-204ENST00000506098 GJA3Q9Y6H8 435 aa8.62□□□□□ -1.03
NUP54-204ENST00000506098 COL2A1P02458 1487 aaPredicted RBP8.62□□□□□ -1.03
NUP54-204ENST00000506098 PTPRFP10586 1907 aa8.61□□□□□ -1.03
NUP54-204ENST00000506098 GLTPD2A6NH11 291 aa8.61□□□□□ -1.03
NUP54-204ENST00000506098 SPDYE2BA6NHP3 402 aa8.61□□□□□ -1.03
NUP54-204ENST00000506098 DDNO94850 711 aaPredicted RBP8.61□□□□□ -1.03
NUP54-204ENST00000506098 FGAP02671 866 aa8.61□□□□□ -1.03
NUP54-204ENST00000506098 SPDYE6P0CI01 402 aa8.61□□□□□ -1.03
NUP54-204ENST00000506098 RBM25P49756 843 aaKnown RBP8.61□□□□□ -1.03
NUP54-204ENST00000506098 TSGA10IPQ3SY00 556 aa8.61□□□□□ -1.03
NUP54-204ENST00000506098 FKBP1CQ5VVH2 108 aa8.61□□□□□ -1.03
NUP54-204ENST00000506098 CDC42EP5Q6NZY7 148 aa8.61□□□□□ -1.03
NUP54-204ENST00000506098 IFNL3Q8IZI9 196 aa8.61□□□□□ -1.03
NUP54-204ENST00000506098 SH3RF3Q8TEJ3 882 aaPredicted RBP8.61□□□□□ -1.03
NUP54-204ENST00000506098 PRMT6Q96LA8 375 aaPredicted RBP8.61□□□□□ -1.03
NUP54-204ENST00000506098 IDI2Q9BXS1 227 aa8.61□□□□□ -1.03
NUP54-204ENST00000506098 EPB41L4AQ9HCS5 686 aaPredicted RBP8.61□□□□□ -1.03
NUP54-204ENST00000506098 MYOZ2Q9NPC6 264 aa8.61□□□□□ -1.03
NUP54-204ENST00000506098 RTN4Q9NQC3 1192 aaKnown RBP8.61□□□□□ -1.03
NUP54-204ENST00000506098 SLC4A4Q9Y6R1 1079 aa8.61□□□□□ -1.03
NUP54-204ENST00000506098 U3KPZ7 1027 aaPredicted RBP8.61□□□□□ -1.03
NUP54-204ENST00000506098 OTOFQ9HC10 1997 aa8.61□□□□□ -1.03
NUP54-204ENST00000506098 PAPPA2Q9BXP8 1791 aa8.61□□□□□ -1.03
NUP54-204ENST00000506098 DOCK1Q14185 1865 aa8.6□□□□□ -1.03
NUP54-204ENST00000506098 SHTN1A0MZ66 631 aa8.6□□□□□ -1.03
NUP54-204ENST00000506098 H7C1D1 291 aa8.6□□□□□ -1.03
NUP54-204ENST00000506098 WNT10BO00744 389 aa8.6□□□□□ -1.03
NUP54-204ENST00000506098 PRKAB2O43741 272 aa8.6□□□□□ -1.03
NUP54-204ENST00000506098 WDHD1O75717 1129 aaPredicted RBP8.6□□□□□ -1.03
NUP54-204ENST00000506098 HSPA4P34932 840 aa8.6□□□□□ -1.03
NUP54-204ENST00000506098 DLGAP5Q15398 846 aa8.6□□□□□ -1.03
NUP54-204ENST00000506098 SBK1Q52WX2 424 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms