RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ITPKAP23677 461 aa8.41□□□□□ -1.06
VPS50-219ENST00000495039 ZNF574Q6ZN55 896 aaPredicted RBP8.41□□□□□ -1.06
VPS50-219ENST00000495039 EHD4Q9H223 541 aa8.41□□□□□ -1.06
VPS50-219ENST00000495039 BRPF3Q9ULD4 1205 aa8.41□□□□□ -1.06
VPS50-219ENST00000495039 ZNF792Q3KQV3 632 aa8.4□□□□□ -1.06
VPS50-219ENST00000495039 KRTAP4-7Q9BYR0 210 aa8.4□□□□□ -1.06
VPS50-219ENST00000495039 LGR6Q9HBX8 967 aa8.4□□□□□ -1.06
VPS50-219ENST00000495039 EGFL7Q9UHF1 273 aa8.4□□□□□ -1.06
VPS50-219ENST00000495039 PTPN12Q05209 780 aaKnown RBP8.39□□□□□ -1.07
VPS50-219ENST00000495039 USPL1Q5W0Q7 1092 aa8.39□□□□□ -1.07
VPS50-219ENST00000495039 PPP1R9AQ9ULJ8 1098 aa8.39□□□□□ -1.07
VPS50-219ENST00000495039 HNRNPUQ00839 825 aaKnown RBP eCLIP8.38□□□□□ -1.07
VPS50-219ENST00000495039 SPRED2Q7Z698 418 aa8.38□□□□□ -1.07
VPS50-219ENST00000495039 WFDC3Q8IUB2 231 aa8.38□□□□□ -1.07
VPS50-219ENST00000495039 CCDC82Q8N4S0 544 aa8.38□□□□□ -1.07
VPS50-219ENST00000495039 ATXN3LQ9H3M9 355 aa8.38□□□□□ -1.07
VPS50-219ENST00000495039 PIDD1Q9HB75 910 aa8.38□□□□□ -1.07
VPS50-219ENST00000495039 NPHS2Q9NP85 383 aa8.38□□□□□ -1.07
VPS50-219ENST00000495039 TMPRSS2O15393 492 aa8.37□□□□□ -1.07
VPS50-219ENST00000495039 ICMTO60725 284 aa8.37□□□□□ -1.07
VPS50-219ENST00000495039 CPNE3O75131 537 aaKnown RBP8.37□□□□□ -1.07
VPS50-219ENST00000495039 NETO1Q8TDF5 533 aa8.37□□□□□ -1.07
VPS50-219ENST00000495039 FAM87AP0C7U9 286 aa8.36□□□□□ -1.07
VPS50-219ENST00000495039 PDE3BQ13370 1112 aa8.36□□□□□ -1.07
VPS50-219ENST00000495039 RPS26P11Q5JNZ5 115 aaPredicted RBP8.36□□□□□ -1.07
VPS50-219ENST00000495039 CRIM1Q9NZV1 1036 aa8.36□□□□□ -1.07
VPS50-219ENST00000495039 H3BRB1 525 aa8.35□□□□□ -1.07
VPS50-219ENST00000495039 NDUFB5O43674 189 aa8.35□□□□□ -1.07
VPS50-219ENST00000495039 SLFN14P0C7P3 912 aa8.35□□□□□ -1.07
VPS50-219ENST00000495039 FUT4P22083 530 aa8.35□□□□□ -1.07
VPS50-219ENST00000495039 ID3Q02535 119 aa8.35□□□□□ -1.07
VPS50-219ENST00000495039 CDK5R2Q13319 367 aa8.35□□□□□ -1.07
VPS50-219ENST00000495039 PRPF40BQ6NWY9 871 aaKnown RBP8.35□□□□□ -1.07
VPS50-219ENST00000495039 ATG4DQ86TL0 474 aaPredicted RBP8.35□□□□□ -1.07
VPS50-219ENST00000495039 GLYCTKQ8IVS8 523 aa8.35□□□□□ -1.07
VPS50-219ENST00000495039 PLD6Q8N2A8 252 aaKnown RBP8.35□□□□□ -1.07
VPS50-219ENST00000495039 TUT1Q9H6E5 874 aaKnown RBP8.35□□□□□ -1.07
VPS50-219ENST00000495039 ABCB6Q9NP58 842 aa8.35□□□□□ -1.07
VPS50-219ENST00000495039 LIG1P18858 919 aa8.34□□□□□ -1.07
VPS50-219ENST00000495039 BNIP3Q12983 259 aa8.34□□□□□ -1.07
VPS50-219ENST00000495039 ORC1Q13415 861 aa8.34□□□□□ -1.07
VPS50-219ENST00000495039 ZNF648Q5T619 568 aaPredicted RBP8.34□□□□□ -1.07
VPS50-219ENST00000495039 B4GALNT3Q6L9W6 998 aa8.34□□□□□ -1.07
VPS50-219ENST00000495039 FAM181AQ8N9Y4 354 aa8.34□□□□□ -1.07
VPS50-219ENST00000495039 FANCD2OSQ96PS1 177 aa8.34□□□□□ -1.07
VPS50-219ENST00000495039 CCDC86Q9H6F5 360 aaKnown RBP8.34□□□□□ -1.07
VPS50-219ENST00000495039 RC3H2Q9HBD1 1191 aaKnown RBP8.34□□□□□ -1.07
VPS50-219ENST00000495039 CARNS1A5YM72 827 aa8.33□□□□□ -1.08
VPS50-219ENST00000495039 CARMIL2Q6F5E8 1435 aa8.33□□□□□ -1.08
VPS50-219ENST00000495039 SMYD4Q8IYR2 804 aaPredicted RBP8.33□□□□□ -1.08
VPS50-219ENST00000495039 WDR89Q96FK6 387 aaPredicted RBP8.33□□□□□ -1.08
VPS50-219ENST00000495039 MKNK2Q9HBH9 465 aa8.33□□□□□ -1.08
VPS50-219ENST00000495039 VAV3Q9UKW4 847 aa8.33□□□□□ -1.08
VPS50-219ENST00000495039 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.33□□□□□ -1.08
VPS50-219ENST00000495039 TMEM238LA0A1B0GVL6 79 aa8.32□□□□□ -1.08
VPS50-219ENST00000495039 CD8BP10966 210 aa8.32□□□□□ -1.08
VPS50-219ENST00000495039 PRKCQQ04759 706 aa8.32□□□□□ -1.08
VPS50-219ENST00000495039 IFI16Q16666 785 aaKnown RBP8.32□□□□□ -1.08
VPS50-219ENST00000495039 FAM129BQ96TA1 746 aa8.32□□□□□ -1.08
VPS50-219ENST00000495039 KRT82Q9NSB4 513 aa8.32□□□□□ -1.08
VPS50-219ENST00000495039 TRAK1Q9UPV9 953 aa8.32□□□□□ -1.08
VPS50-219ENST00000495039 GADD45BO75293 160 aaPredicted RBP8.31□□□□□ -1.08
VPS50-219ENST00000495039 KIF4BQ2VIQ3 1234 aa8.31□□□□□ -1.08
VPS50-219ENST00000495039 ARHGAP27Q6ZUM4 889 aa8.31□□□□□ -1.08
VPS50-219ENST00000495039 GLIS3Q8NEA6 775 aa8.31□□□□□ -1.08
VPS50-219ENST00000495039 FAM168AQ92567 244 aa8.31□□□□□ -1.08
VPS50-219ENST00000495039 CCDC74AQ96AQ1 378 aa8.31□□□□□ -1.08
VPS50-219ENST00000495039 CITED4Q96RK1 184 aa8.31□□□□□ -1.08
VPS50-219ENST00000495039 ZC3H12CQ9C0D7 883 aaKnown RBP8.31□□□□□ -1.08
VPS50-219ENST00000495039 DNAJC25Q9H1X3 360 aa8.31□□□□□ -1.08
VPS50-219ENST00000495039 ZNF862O60290 1169 aa8.3□□□□□ -1.08
VPS50-219ENST00000495039 FARP2O94887 1054 aaPredicted RBP8.3□□□□□ -1.08
VPS50-219ENST00000495039 RNASE1P07998 156 aaKnown RBP8.3□□□□□ -1.08
VPS50-219ENST00000495039 GSTP1P09211 210 aaKnown RBP8.3□□□□□ -1.08
VPS50-219ENST00000495039 ZNF157P51786 506 aaPredicted RBP8.3□□□□□ -1.08
VPS50-219ENST00000495039 ARHGAP4P98171 946 aa8.3□□□□□ -1.08
VPS50-219ENST00000495039 FAAP100Q0VG06 881 aa8.3□□□□□ -1.08
VPS50-219ENST00000495039 PI4K2BQ8TCG2 481 aa8.3□□□□□ -1.08
VPS50-219ENST00000495039 DISC1Q9NRI5 854 aa8.3□□□□□ -1.08
VPS50-219ENST00000495039 MBNL3Q9NUK0 354 aaKnown RBP8.3□□□□□ -1.08
VPS50-219ENST00000495039 EIF1AYO14602 144 aaKnown RBP8.29□□□□□ -1.08
VPS50-219ENST00000495039 RNGTTO60942 597 aaKnown RBP8.29□□□□□ -1.08
VPS50-219ENST00000495039 SERPINB4P48594 390 aa8.29□□□□□ -1.08
VPS50-219ENST00000495039 TTLL4Q14679 1199 aa8.29□□□□□ -1.08
VPS50-219ENST00000495039 PKN1Q16512 942 aa8.29□□□□□ -1.08
VPS50-219ENST00000495039 ECM1Q16610 540 aa8.29□□□□□ -1.08
VPS50-219ENST00000495039 TMEM40Q8WWA1 233 aa8.29□□□□□ -1.08
VPS50-219ENST00000495039 HRASLS5Q96KN8 279 aa8.29□□□□□ -1.08
VPS50-219ENST00000495039 ADAMTS6Q9UKP5 1117 aa8.29□□□□□ -1.08
VPS50-219ENST00000495039 PCDHGC5Q9Y5F6 944 aa8.29□□□□□ -1.08
VPS50-219ENST00000495039 DBX1A6NMT0 343 aa8.28□□□□□ -1.08
VPS50-219ENST00000495039 CEACAM5P06731 702 aa8.28□□□□□ -1.08
VPS50-219ENST00000495039 HCLS1P14317 486 aaPredicted RBP8.28□□□□□ -1.08
VPS50-219ENST00000495039 PPP2R3AQ06190 1150 aa8.28□□□□□ -1.08
VPS50-219ENST00000495039 AOC3Q16853 763 aa8.28□□□□□ -1.08
VPS50-219ENST00000495039 PCOLCE2Q9UKZ9 415 aa8.28□□□□□ -1.08
VPS50-219ENST00000495039 USTQ9Y2C2 406 aa8.28□□□□□ -1.08
VPS50-219ENST00000495039 U3KQE9 123 aa8.28□□□□□ -1.08
VPS50-219ENST00000495039 TMEM265A0A087WTH1 108 aa8.27□□□□□ -1.09
VPS50-219ENST00000495039 LEFTY1O75610 366 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms