RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 MRIQ9BWK5 157 aa13.64□□□□□ -0.23
MCF2L-231ENST00000494043 RNF181Q9P0P0 153 aa13.64□□□□□ -0.23
MCF2L-231ENST00000494043 SERPINA10Q9UK55 444 aa13.64□□□□□ -0.23
MCF2L-231ENST00000494043 TIAM2Q8IVF5 1701 aa13.64□□□□□ -0.23
MCF2L-231ENST00000494043 ADAMTSL1Q8N6G6 1762 aa13.63□□□□□ -0.23
MCF2L-231ENST00000494043 PRKAB2O43741 272 aa13.63□□□□□ -0.23
MCF2L-231ENST00000494043 PLCG2P16885 1265 aa13.63□□□□□ -0.23
MCF2L-231ENST00000494043 RPS12P25398 132 aaKnown RBP13.63□□□□□ -0.23
MCF2L-231ENST00000494043 NECTIN1Q15223 517 aa13.63□□□□□ -0.23
MCF2L-231ENST00000494043 CRNKL1Q9BZJ0 848 aaKnown RBP13.63□□□□□ -0.23
MCF2L-231ENST00000494043 ZBTB12Q9Y330 459 aaPredicted RBP13.63□□□□□ -0.23
MCF2L-231ENST00000494043 SLC4A4Q9Y6R1 1079 aa13.63□□□□□ -0.23
MCF2L-231ENST00000494043 ZMYM6O95789 1325 aa13.63□□□□□ -0.23
MCF2L-231ENST00000494043 GSG1L2A8MUP6 293 aa13.62□□□□□ -0.23
MCF2L-231ENST00000494043 PATL2C9JE40 543 aaKnown RBP13.62□□□□□ -0.23
MCF2L-231ENST00000494043 APPP05067 770 aa13.62□□□□□ -0.23
MCF2L-231ENST00000494043 ALX1Q15699 326 aa13.62□□□□□ -0.23
MCF2L-231ENST00000494043 C9orf131Q5VYM1 1079 aa13.62□□□□□ -0.23
MCF2L-231ENST00000494043 CREB3L3Q68CJ9 461 aa13.62□□□□□ -0.23
MCF2L-231ENST00000494043 SH3RF3Q8TEJ3 882 aaPredicted RBP13.62□□□□□ -0.23
MCF2L-231ENST00000494043 KCNB2Q92953 911 aa13.62□□□□□ -0.23
MCF2L-231ENST00000494043 ZDHHC15Q96MV8 337 aa13.62□□□□□ -0.23
MCF2L-231ENST00000494043 EPB41L4AQ9HCS5 686 aaPredicted RBP13.62□□□□□ -0.23
MCF2L-231ENST00000494043 CTNNA3Q9UI47 895 aa13.62□□□□□ -0.23
MCF2L-231ENST00000494043 HDAC9Q9UKV0 1011 aa13.62□□□□□ -0.23
MCF2L-231ENST00000494043 PALD1Q9ULE6 856 aa13.62□□□□□ -0.23
MCF2L-231ENST00000494043 SLC27A2O14975 620 aa13.61□□□□□ -0.23
MCF2L-231ENST00000494043 FGAP02671 866 aa13.61□□□□□ -0.23
MCF2L-231ENST00000494043 USP17L8P0C7I0 530 aa13.61□□□□□ -0.23
MCF2L-231ENST00000494043 MMP14P50281 582 aa13.61□□□□□ -0.23
MCF2L-231ENST00000494043 RHBDL3P58872 404 aa13.61□□□□□ -0.23
MCF2L-231ENST00000494043 ANAPC15P60006 121 aa13.61□□□□□ -0.23
MCF2L-231ENST00000494043 APOBEC3HQ6NTF7 200 aaKnown RBP13.61□□□□□ -0.23
MCF2L-231ENST00000494043 POTEDQ86YR6 584 aa13.61□□□□□ -0.23
MCF2L-231ENST00000494043 OGFOD1Q8N543 542 aa13.61□□□□□ -0.23
MCF2L-231ENST00000494043 SDR42E1Q8WUS8 393 aa13.61□□□□□ -0.23
MCF2L-231ENST00000494043 NACAP1Q9BZK3 213 aa13.61□□□□□ -0.23
MCF2L-231ENST00000494043 GJA3Q9Y6H8 435 aa13.61□□□□□ -0.23
MCF2L-231ENST00000494043 GMPSP49915 693 aaPredicted RBP13.6□□□□□ -0.23
MCF2L-231ENST00000494043 RBM5P52756 815 aaKnown RBP eCLIP13.6□□□□□ -0.23
MCF2L-231ENST00000494043 CFAP100Q494V2 611 aa13.6□□□□□ -0.23
MCF2L-231ENST00000494043 RNF20Q5VTR2 975 aa13.6□□□□□ -0.23
MCF2L-231ENST00000494043 GIMAP6Q6P9H5 292 aa13.6□□□□□ -0.23
MCF2L-231ENST00000494043 TEX11Q8IYF3 940 aa13.6□□□□□ -0.23
MCF2L-231ENST00000494043 IFNL3Q8IZI9 196 aa13.6□□□□□ -0.23
MCF2L-231ENST00000494043 GPC2Q8N158 579 aa13.6□□□□□ -0.23
MCF2L-231ENST00000494043 DPF2Q92785 391 aa13.6□□□□□ -0.23
MCF2L-231ENST00000494043 IL17RAQ96F46 866 aa13.6□□□□□ -0.23
MCF2L-231ENST00000494043 KIF2CQ99661 725 aa13.6□□□□□ -0.23
MCF2L-231ENST00000494043 NAPBQ9H115 298 aa13.6□□□□□ -0.23
MCF2L-231ENST00000494043 ATP8A2Q9NTI2 1148 aa13.6□□□□□ -0.23
MCF2L-231ENST00000494043 RBM19Q9Y4C8 960 aaKnown RBP13.6□□□□□ -0.23
MCF2L-231ENST00000494043 PCDHAC2Q9Y5I4 1007 aa13.6□□□□□ -0.23
MCF2L-231ENST00000494043 SNX14Q9Y5W7 946 aa13.6□□□□□ -0.23
MCF2L-231ENST00000494043 CYP21A2P08686 494 aa13.59□□□□□ -0.23
MCF2L-231ENST00000494043 ZKSCAN1P17029 563 aaPredicted RBP13.59□□□□□ -0.23
MCF2L-231ENST00000494043 TDO2P48775 406 aa13.59□□□□□ -0.23
MCF2L-231ENST00000494043 ZNF280AP59817 542 aaPredicted RBP13.59□□□□□ -0.23
MCF2L-231ENST00000494043 CDC42EP5Q6NZY7 148 aa13.59□□□□□ -0.23
MCF2L-231ENST00000494043 RASEFQ8IZ41 740 aa13.59□□□□□ -0.23
MCF2L-231ENST00000494043 MTMR14Q8NCE2 650 aa13.59□□□□□ -0.23
MCF2L-231ENST00000494043 DCP1AQ9NPI6 582 aaPredicted RBP13.59□□□□□ -0.23
MCF2L-231ENST00000494043 ZC3H4Q9UPT8 1303 aaKnown RBP13.59□□□□□ -0.23
MCF2L-231ENST00000494043 LAMA4Q16363 1823 aa13.58□□□□□ -0.24
MCF2L-231ENST00000494043 SPDYE2BA6NHP3 402 aa13.58□□□□□ -0.24
MCF2L-231ENST00000494043 SPDYE6P0CI01 402 aa13.58□□□□□ -0.24
MCF2L-231ENST00000494043 USP5P45974 858 aa13.58□□□□□ -0.24
MCF2L-231ENST00000494043 DLGAP5Q15398 846 aa13.58□□□□□ -0.24
MCF2L-231ENST00000494043 IMMTQ16891 758 aaKnown RBP13.58□□□□□ -0.24
MCF2L-231ENST00000494043 TSGA10IPQ3SY00 556 aa13.58□□□□□ -0.24
MCF2L-231ENST00000494043 DDRGK1Q96HY6 314 aa13.58□□□□□ -0.24
MCF2L-231ENST00000494043 USP40Q9NVE5 1235 aa13.58□□□□□ -0.24
MCF2L-231ENST00000494043 MKRN1Q9UHC7 482 aaKnown RBP13.58□□□□□ -0.24
MCF2L-231ENST00000494043 TAF6LQ9Y6J9 622 aa13.58□□□□□ -0.24
MCF2L-231ENST00000494043 FLT1P17948 1338 aa13.58□□□□□ -0.24
MCF2L-231ENST00000494043 NAV1Q8NEY1 1877 aa13.57□□□□□ -0.24
MCF2L-231ENST00000494043 DDX60LQ5H9U9 1706 aaKnown RBP13.57□□□□□ -0.24
MCF2L-231ENST00000494043 SHTN1A0MZ66 631 aa13.57□□□□□ -0.24
MCF2L-231ENST00000494043 WDHD1O75717 1129 aaPredicted RBP13.57□□□□□ -0.24
MCF2L-231ENST00000494043 HAND2P61296 217 aa13.57□□□□□ -0.24
MCF2L-231ENST00000494043 MAPKAPK5Q8IW41 473 aa13.57□□□□□ -0.24
MCF2L-231ENST00000494043 MICALL2Q8IY33 904 aa13.57□□□□□ -0.24
MCF2L-231ENST00000494043 TGFBRAP1Q8WUH2 860 aa13.57□□□□□ -0.24
MCF2L-231ENST00000494043 ZBED3Q96IU2 234 aaPredicted RBP13.57□□□□□ -0.24
MCF2L-231ENST00000494043 MYOZ2Q9NPC6 264 aa13.57□□□□□ -0.24
MCF2L-231ENST00000494043 UTRNP46939 3433 aa13.57□□□□□ -0.24
MCF2L-231ENST00000494043 CDK5RAP2Q96SN8 1893 aa13.57□□□□□ -0.24
MCF2L-231ENST00000494043 FOCADQ5VW36 1801 aa13.56□□□□□ -0.24
MCF2L-231ENST00000494043 ECM29Q5VYK3 1845 aa13.56□□□□□ -0.24
MCF2L-231ENST00000494043 ZNF213O14771 459 aa13.56□□□□□ -0.24
MCF2L-231ENST00000494043 KRT32Q14532 448 aa13.56□□□□□ -0.24
MCF2L-231ENST00000494043 RABEP1Q15276 862 aa13.56□□□□□ -0.24
MCF2L-231ENST00000494043 SBK1Q52WX2 424 aa13.56□□□□□ -0.24
MCF2L-231ENST00000494043 CTR9Q6PD62 1173 aa13.56□□□□□ -0.24
MCF2L-231ENST00000494043 PRMT6Q96LA8 375 aaPredicted RBP13.56□□□□□ -0.24
MCF2L-231ENST00000494043 NBPF3Q9H094 633 aa13.56□□□□□ -0.24
MCF2L-231ENST00000494043 ARPP21Q9UBL0 812 aaPredicted RBP13.56□□□□□ -0.24
MCF2L-231ENST00000494043 CNOT7Q9UIV1 285 aaKnown RBP13.56□□□□□ -0.24
MCF2L-231ENST00000494043 LAMB1P07942 1786 aa13.55□□□□□ -0.24
MCF2L-231ENST00000494043 USP17L12C9JPN9 530 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms