RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 NBPF12Q5TAG4 269 aaPredicted RBP12.93□□□□□ -0.34
PDLIM1-205ENST00000493949 ATF7IPQ6VMQ6 1270 aa12.93□□□□□ -0.34
PDLIM1-205ENST00000493949 CLEC17AQ6ZS10 378 aa12.93□□□□□ -0.34
PDLIM1-205ENST00000493949 ANKRD18AQ8IVF6 992 aa12.93□□□□□ -0.34
PDLIM1-205ENST00000493949 GDF15Q99988 308 aa12.93□□□□□ -0.34
PDLIM1-205ENST00000493949 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.93□□□□□ -0.34
PDLIM1-205ENST00000493949 STAP2Q9UGK3 403 aa12.93□□□□□ -0.34
PDLIM1-205ENST00000493949 PRUNE2Q8WUY3 3088 aa12.92□□□□□ -0.34
PDLIM1-205ENST00000493949 CCL15-CCL14A0A0B4J2E2 113 aa12.92□□□□□ -0.34
PDLIM1-205ENST00000493949 TRAK2O60296 914 aa12.92□□□□□ -0.34
PDLIM1-205ENST00000493949 PDE8AO60658 829 aa12.92□□□□□ -0.34
PDLIM1-205ENST00000493949 FARP2O94887 1054 aaPredicted RBP12.92□□□□□ -0.34
PDLIM1-205ENST00000493949 RLBP1P12271 317 aa12.92□□□□□ -0.34
PDLIM1-205ENST00000493949 CCL15Q16663 113 aa12.92□□□□□ -0.34
PDLIM1-205ENST00000493949 BMP2KLQ5H9B9 411 aa12.92□□□□□ -0.34
PDLIM1-205ENST00000493949 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.92□□□□□ -0.34
PDLIM1-205ENST00000493949 ARAP2Q8WZ64 1704 aa12.92□□□□□ -0.34
PDLIM1-205ENST00000493949 ARHGAP45Q92619 1136 aa12.92□□□□□ -0.34
PDLIM1-205ENST00000493949 FBXW7Q969H0 707 aa12.92□□□□□ -0.34
PDLIM1-205ENST00000493949 ELP3Q9H9T3 547 aa12.92□□□□□ -0.34
PDLIM1-205ENST00000493949 PRDM6Q9NQX0 595 aa12.92□□□□□ -0.34
PDLIM1-205ENST00000493949 MINPP1Q9UNW1 487 aa12.92□□□□□ -0.34
PDLIM1-205ENST00000493949 EYSQ5T1H1 3165 aa12.91□□□□□ -0.34
PDLIM1-205ENST00000493949 EVI5O60447 810 aa12.91□□□□□ -0.34
PDLIM1-205ENST00000493949 WDHD1O75717 1129 aaPredicted RBP12.91□□□□□ -0.34
PDLIM1-205ENST00000493949 CCL5P13501 91 aa12.91□□□□□ -0.34
PDLIM1-205ENST00000493949 GRK4P32298 578 aa12.91□□□□□ -0.34
PDLIM1-205ENST00000493949 CCT4P50991 539 aaKnown RBP12.91□□□□□ -0.34
PDLIM1-205ENST00000493949 Q7L0L9 218 aa12.91□□□□□ -0.34
PDLIM1-205ENST00000493949 TXNRD3Q86VQ6 643 aa12.91□□□□□ -0.34
PDLIM1-205ENST00000493949 HELBQ8NG08 1087 aaPredicted RBP12.91□□□□□ -0.34
PDLIM1-205ENST00000493949 BSDC1Q9NW68 430 aaPredicted RBP12.91□□□□□ -0.34
PDLIM1-205ENST00000493949 SRRDQ9UH36 339 aa12.91□□□□□ -0.34
PDLIM1-205ENST00000493949 PCCAP05165 728 aaPredicted RBP12.9□□□□□ -0.34
PDLIM1-205ENST00000493949 XRCC6P12956 609 aaKnown RBP eCLIP12.9□□□□□ -0.34
PDLIM1-205ENST00000493949 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.9□□□□□ -0.34
PDLIM1-205ENST00000493949 PHF12Q96QT6 1004 aa12.9□□□□□ -0.34
PDLIM1-205ENST00000493949 CDC5LQ99459 802 aaKnown RBP12.9□□□□□ -0.34
PDLIM1-205ENST00000493949 RNF208Q9H0X6 261 aa12.9□□□□□ -0.34
PDLIM1-205ENST00000493949 SMC4Q9NTJ3 1288 aa12.9□□□□□ -0.34
PDLIM1-205ENST00000493949 LEMD3Q9Y2U8 911 aa12.9□□□□□ -0.34
PDLIM1-205ENST00000493949 RIPOR2Q9Y4F9 1068 aa12.9□□□□□ -0.34
PDLIM1-205ENST00000493949 GOLGA6L22H0YM25 854 aa12.89□□□□□ -0.35
PDLIM1-205ENST00000493949 MYO1BO43795 1136 aa12.89□□□□□ -0.35
PDLIM1-205ENST00000493949 RRP9O43818 475 aaKnown RBP12.89□□□□□ -0.35
PDLIM1-205ENST00000493949 SGPL1O95470 568 aa12.89□□□□□ -0.35
PDLIM1-205ENST00000493949 CTGFP29279 349 aa12.89□□□□□ -0.35
PDLIM1-205ENST00000493949 GTF2IP78347 998 aa12.89□□□□□ -0.35
PDLIM1-205ENST00000493949 NUCB1Q02818 461 aa12.89□□□□□ -0.35
PDLIM1-205ENST00000493949 NEUROD2Q15784 382 aa12.89□□□□□ -0.35
PDLIM1-205ENST00000493949 C17orf99Q6UX52 265 aa12.89□□□□□ -0.35
PDLIM1-205ENST00000493949 U2AF1L4Q8WU68 220 aaKnown RBP12.89□□□□□ -0.35
PDLIM1-205ENST00000493949 ZBTB40Q9NUA8 1239 aa12.89□□□□□ -0.35
PDLIM1-205ENST00000493949 DBF4Q9UBU7 674 aaPredicted RBP12.89□□□□□ -0.35
PDLIM1-205ENST00000493949 SPDYE4A6NLX3 237 aa12.88□□□□□ -0.35
PDLIM1-205ENST00000493949 POTEB2H3BUK9 544 aa12.88□□□□□ -0.35
PDLIM1-205ENST00000493949 HOXB7P09629 217 aa12.88□□□□□ -0.35
PDLIM1-205ENST00000493949 HOXD10P28358 340 aa12.88□□□□□ -0.35
PDLIM1-205ENST00000493949 TMPOP42166 694 aaKnown RBP12.88□□□□□ -0.35
PDLIM1-205ENST00000493949 TERF1P54274 439 aa12.88□□□□□ -0.35
PDLIM1-205ENST00000493949 RASA3Q14644 834 aa12.88□□□□□ -0.35
PDLIM1-205ENST00000493949 CERS5Q8N5B7 392 aa12.88□□□□□ -0.35
PDLIM1-205ENST00000493949 CCDC191Q8NCU4 936 aa12.88□□□□□ -0.35
PDLIM1-205ENST00000493949 PRMT6Q96LA8 375 aaPredicted RBP12.88□□□□□ -0.35
PDLIM1-205ENST00000493949 TRIM47Q96LD4 638 aa12.88□□□□□ -0.35
PDLIM1-205ENST00000493949 GRPEL1Q9HAV7 217 aa12.88□□□□□ -0.35
PDLIM1-205ENST00000493949 HYPKQ9NX55 129 aa12.88□□□□□ -0.35
PDLIM1-205ENST00000493949 PCDHAC2Q9Y5I4 1007 aa12.88□□□□□ -0.35
PDLIM1-205ENST00000493949 CLRN2A0PK11 232 aa12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 SPDYE5A6NIY4 337 aa12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 BTBD19C9JJ37 291 aa12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 TPM2P07951 284 aa12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 TRIM27P14373 513 aa12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 OSBPP22059 807 aa12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 PSMC4P43686 418 aa12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 FKBP1AP62942 108 aaKnown RBP12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 UBXN2AP68543 259 aa12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 VGLL4Q14135 290 aa12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 RAB3GAP1Q15042 981 aa12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 CFAP100Q494V2 611 aa12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 HDGFL1Q5TGJ6 251 aa12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 RAET1EQ8TD07 263 aa12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 TEPSINQ96N21 525 aa12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 AOX1Q06278 1338 aa12.87□□□□□ -0.35
PDLIM1-205ENST00000493949 A0A1B0GUL6 1792 aa12.86□□□□□ -0.35
PDLIM1-205ENST00000493949 CHL1O00533 1208 aa12.86□□□□□ -0.35
PDLIM1-205ENST00000493949 CETPP11597 493 aa12.86□□□□□ -0.35
PDLIM1-205ENST00000493949 MAP3K9P80192 1104 aa12.86□□□□□ -0.35
PDLIM1-205ENST00000493949 TNFAIP1Q13829 316 aa12.86□□□□□ -0.35
PDLIM1-205ENST00000493949 HS1BP3Q53T59 392 aa12.86□□□□□ -0.35
PDLIM1-205ENST00000493949 PHAXQ9H814 394 aaKnown RBP12.86□□□□□ -0.35
PDLIM1-205ENST00000493949 VEZTQ9HBM0 779 aa12.86□□□□□ -0.35
PDLIM1-205ENST00000493949 CD209Q9NNX6 404 aa12.86□□□□□ -0.35
PDLIM1-205ENST00000493949 RRAGDQ9NQL2 400 aaPredicted RBP12.86□□□□□ -0.35
PDLIM1-205ENST00000493949 ADGRA2Q96PE1 1338 aa12.86□□□□□ -0.35
PDLIM1-205ENST00000493949 MUC3AQ02505 3323 aa12.85□□□□□ -0.35
PDLIM1-205ENST00000493949 DOCK3Q8IZD9 2030 aa12.85□□□□□ -0.35
PDLIM1-205ENST00000493949 KLRK1P26718 216 aa12.85□□□□□ -0.35
PDLIM1-205ENST00000493949 BCAMP50895 628 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms