RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 JAKMIP1Q96N16 626 aaKnown RBP13.68□□□□□ -0.22
C9orf3-220ENST00000489318 UPF3BQ9BZI7 483 aaKnown RBP13.68□□□□□ -0.22
C9orf3-220ENST00000489318 NACAP1Q9BZK3 213 aa13.68□□□□□ -0.22
C9orf3-220ENST00000489318 ALDH8A1Q9H2A2 487 aaPredicted RBP13.68□□□□□ -0.22
C9orf3-220ENST00000489318 TAOK3Q9H2K8 898 aa13.68□□□□□ -0.22
C9orf3-220ENST00000489318 SLC4A4Q9Y6R1 1079 aa13.68□□□□□ -0.22
C9orf3-220ENST00000489318 SBF1O95248 1867 aa13.67□□□□□ -0.22
C9orf3-220ENST00000489318 MYO3BQ8WXR4 1341 aa13.67□□□□□ -0.22
C9orf3-220ENST00000489318 MYH1P12882 1939 aa13.67□□□□□ -0.22
C9orf3-220ENST00000489318 USP17L3A6NCW0 530 aa13.67□□□□□ -0.22
C9orf3-220ENST00000489318 USP17L4A6NCW7 530 aa13.67□□□□□ -0.22
C9orf3-220ENST00000489318 G3V3G9 751 aa13.67□□□□□ -0.22
C9orf3-220ENST00000489318 PRKAB2O43741 272 aa13.67□□□□□ -0.22
C9orf3-220ENST00000489318 IARSP41252 1262 aaKnown RBP13.67□□□□□ -0.22
C9orf3-220ENST00000489318 DYNLL1P63167 89 aaKnown RBP13.67□□□□□ -0.22
C9orf3-220ENST00000489318 HDLBPQ00341 1268 aaKnown RBP13.67□□□□□ -0.22
C9orf3-220ENST00000489318 DCAF8Q5TAQ9 597 aa13.67□□□□□ -0.22
C9orf3-220ENST00000489318 USP17L1Q7RTZ2 530 aa13.67□□□□□ -0.22
C9orf3-220ENST00000489318 MRIQ9BWK5 157 aa13.67□□□□□ -0.22
C9orf3-220ENST00000489318 NBPF3Q9H094 633 aa13.67□□□□□ -0.22
C9orf3-220ENST00000489318 NAPBQ9H115 298 aa13.67□□□□□ -0.22
C9orf3-220ENST00000489318 AATFQ9NY61 560 aaKnown RBP eCLIP13.67□□□□□ -0.22
C9orf3-220ENST00000489318 PPP1R1BQ9UD71 204 aaPredicted RBP13.67□□□□□ -0.22
C9orf3-220ENST00000489318 MKRN1Q9UHC7 482 aaKnown RBP13.67□□□□□ -0.22
C9orf3-220ENST00000489318 E7EWF7 191 aa13.66□□□□□ -0.22
C9orf3-220ENST00000489318 BAG3O95817 575 aa13.66□□□□□ -0.22
C9orf3-220ENST00000489318 HMGB1P09429 215 aaKnown RBP13.66□□□□□ -0.22
C9orf3-220ENST00000489318 RPS6KB1P23443 525 aa13.66□□□□□ -0.22
C9orf3-220ENST00000489318 HHIPL2Q6UWX4 724 aa13.66□□□□□ -0.22
C9orf3-220ENST00000489318 KLHL34Q8N239 644 aa13.66□□□□□ -0.22
C9orf3-220ENST00000489318 LARGE2Q8N3Y3 721 aa13.66□□□□□ -0.22
C9orf3-220ENST00000489318 NEK1Q96PY6 1258 aa13.66□□□□□ -0.22
C9orf3-220ENST00000489318 CRNKL1Q9BZJ0 848 aaKnown RBP13.66□□□□□ -0.22
C9orf3-220ENST00000489318 ZNF277Q9NRM2 450 aaPredicted RBP13.66□□□□□ -0.22
C9orf3-220ENST00000489318 ATP8A2Q9NTI2 1148 aa13.66□□□□□ -0.22
C9orf3-220ENST00000489318 ANAPC4Q9UJX5 808 aa13.66□□□□□ -0.22
C9orf3-220ENST00000489318 DAGLAQ9Y4D2 1042 aa13.66□□□□□ -0.22
C9orf3-220ENST00000489318 CYP46A1Q9Y6A2 500 aa13.66□□□□□ -0.22
C9orf3-220ENST00000489318 ROBO3Q96MS0 1386 aa13.66□□□□□ -0.22
C9orf3-220ENST00000489318 WDR19Q8NEZ3 1342 aa13.65□□□□□ -0.22
C9orf3-220ENST00000489318 ZNF213O14771 459 aa13.65□□□□□ -0.22
C9orf3-220ENST00000489318 PLCG2P16885 1265 aa13.65□□□□□ -0.22
C9orf3-220ENST00000489318 BTDP43251 543 aa13.65□□□□□ -0.22
C9orf3-220ENST00000489318 COL9A3Q14050 684 aaPredicted RBP13.65□□□□□ -0.22
C9orf3-220ENST00000489318 BLOC1S2Q6QNY1 142 aa13.65□□□□□ -0.22
C9orf3-220ENST00000489318 TBC1D10CQ8IV04 446 aa13.65□□□□□ -0.22
C9orf3-220ENST00000489318 FBXL16Q8N461 479 aa13.65□□□□□ -0.22
C9orf3-220ENST00000489318 SDR42E1Q8WUS8 393 aa13.65□□□□□ -0.22
C9orf3-220ENST00000489318 AGXT2Q9BYV1 514 aa13.65□□□□□ -0.22
C9orf3-220ENST00000489318 FHDC1Q9C0D6 1143 aaPredicted RBP13.65□□□□□ -0.22
C9orf3-220ENST00000489318 DCP1AQ9NPI6 582 aaPredicted RBP13.65□□□□□ -0.22
C9orf3-220ENST00000489318 KCNQ5Q9NR82 932 aa13.65□□□□□ -0.22
C9orf3-220ENST00000489318 TTF2Q9UNY4 1162 aaKnown RBP13.65□□□□□ -0.22
C9orf3-220ENST00000489318 BCS1LQ9Y276 419 aa13.65□□□□□ -0.22
C9orf3-220ENST00000489318 APPP05067 770 aa13.64□□□□□ -0.23
C9orf3-220ENST00000489318 TDO2P48775 406 aa13.64□□□□□ -0.23
C9orf3-220ENST00000489318 RHBDL3P58872 404 aa13.64□□□□□ -0.23
C9orf3-220ENST00000489318 SBK1Q52WX2 424 aa13.64□□□□□ -0.23
C9orf3-220ENST00000489318 NIM1KQ8IY84 436 aa13.64□□□□□ -0.23
C9orf3-220ENST00000489318 MB21D2Q8IYB1 491 aaPredicted RBP13.64□□□□□ -0.23
C9orf3-220ENST00000489318 NOL10Q9BSC4 688 aaKnown RBP13.64□□□□□ -0.23
C9orf3-220ENST00000489318 MXD3Q9BW11 206 aa13.64□□□□□ -0.23
C9orf3-220ENST00000489318 ARPP21Q9UBL0 812 aaPredicted RBP13.64□□□□□ -0.23
C9orf3-220ENST00000489318 ZNRF3Q9ULT6 936 aa13.64□□□□□ -0.23
C9orf3-220ENST00000489318 SIPA1L1O43166 1804 aa13.64□□□□□ -0.23
C9orf3-220ENST00000489318 VIL1P09327 827 aaKnown RBP13.63□□□□□ -0.23
C9orf3-220ENST00000489318 FGRP09769 529 aa13.63□□□□□ -0.23
C9orf3-220ENST00000489318 CPA1P15085 419 aa13.63□□□□□ -0.23
C9orf3-220ENST00000489318 AK2P54819 239 aa13.63□□□□□ -0.23
C9orf3-220ENST00000489318 HAND2P61296 217 aa13.63□□□□□ -0.23
C9orf3-220ENST00000489318 EXOSC10Q01780 885 aaKnown RBP13.63□□□□□ -0.23
C9orf3-220ENST00000489318 PPARAQ07869 468 aa13.63□□□□□ -0.23
C9orf3-220ENST00000489318 DHX32Q7L7V1 743 aaKnown RBP13.63□□□□□ -0.23
C9orf3-220ENST00000489318 SH3RF3Q8TEJ3 882 aaPredicted RBP13.63□□□□□ -0.23
C9orf3-220ENST00000489318 STAG1Q8WVM7 1258 aa13.63□□□□□ -0.23
C9orf3-220ENST00000489318 FBXW7Q969H0 707 aa13.63□□□□□ -0.23
C9orf3-220ENST00000489318 ZDHHC15Q96MV8 337 aa13.63□□□□□ -0.23
C9orf3-220ENST00000489318 GMLQ99445 158 aa13.63□□□□□ -0.23
C9orf3-220ENST00000489318 PDRG1Q9NUG6 133 aa13.63□□□□□ -0.23
C9orf3-220ENST00000489318 SERPINA10Q9UK55 444 aa13.63□□□□□ -0.23
C9orf3-220ENST00000489318 COL2A1P02458 1487 aaPredicted RBP13.62□□□□□ -0.23
C9orf3-220ENST00000489318 PCP11498 1178 aaKnown RBP13.62□□□□□ -0.23
C9orf3-220ENST00000489318 SLC4A3P48751 1232 aa13.62□□□□□ -0.23
C9orf3-220ENST00000489318 NT5C2P49902 561 aa13.62□□□□□ -0.23
C9orf3-220ENST00000489318 CUL4AQ13619 759 aa13.62□□□□□ -0.23
C9orf3-220ENST00000489318 ANKRD1Q15327 319 aa13.62□□□□□ -0.23
C9orf3-220ENST00000489318 RSBN1LQ6PCB5 846 aaPredicted RBP13.62□□□□□ -0.23
C9orf3-220ENST00000489318 NCOA7Q8NI08 942 aa13.62□□□□□ -0.23
C9orf3-220ENST00000489318 TEKT1Q969V4 418 aa13.62□□□□□ -0.23
C9orf3-220ENST00000489318 DAXXQ9UER7 740 aaPredicted RBP13.62□□□□□ -0.23
C9orf3-220ENST00000489318 MYH8P13535 1937 aa13.62□□□□□ -0.23
C9orf3-220ENST00000489318 NEDD4P46934 1319 aa13.62□□□□□ -0.23
C9orf3-220ENST00000489318 DDIT3P35638 169 aa13.61□□□□□ -0.23
C9orf3-220ENST00000489318 CRKP46108 304 aa13.61□□□□□ -0.23
C9orf3-220ENST00000489318 PRELPP51888 382 aa13.61□□□□□ -0.23
C9orf3-220ENST00000489318 TOB2Q14106 344 aaPredicted RBP13.61□□□□□ -0.23
C9orf3-220ENST00000489318 AKNAD1Q5T1N1 836 aa13.61□□□□□ -0.23
C9orf3-220ENST00000489318 APOBEC3HQ6NTF7 200 aaKnown RBP13.61□□□□□ -0.23
C9orf3-220ENST00000489318 CTR9Q6PD62 1173 aa13.61□□□□□ -0.23
C9orf3-220ENST00000489318 AGBL3Q8NEM8 1001 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms