RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 TCRBV5S4A2TA0A5A2 114 aa23.31■■□□□ 1.32
CCM2-216ENST00000488727 TRIM6-TRIM34B2RNG4 842 aa23.31■■□□□ 1.32
CCM2-216ENST00000488727 RBM25P49756 843 aaKnown RBP23.31■■□□□ 1.32
CCM2-216ENST00000488727 GSTO1P78417 241 aa23.31■■□□□ 1.32
CCM2-216ENST00000488727 POLR2AP24928 1970 aaKnown RBP23.31■■□□□ 1.32
CCM2-216ENST00000488727 CYP7A1P22680 504 aa23.3■■□□□ 1.32
CCM2-216ENST00000488727 ADD2P35612 726 aa23.3■■□□□ 1.32
CCM2-216ENST00000488727 SLF2Q8IX21 1173 aa23.3■■□□□ 1.32
CCM2-216ENST00000488727 FSD1Q9BTV5 496 aa23.3■■□□□ 1.32
CCM2-216ENST00000488727 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.3■■□□□ 1.32
CCM2-216ENST00000488727 ZNF532Q9HCE3 1301 aa23.3■■□□□ 1.32
CCM2-216ENST00000488727 EIF5BO60841 1220 aaKnown RBP23.3■■□□□ 1.32
CCM2-216ENST00000488727 RILPL2Q969X0 211 aa23.3■■□□□ 1.32
CCM2-216ENST00000488727 GPR75-ASB3A0A0A6YYF3 556 aa23.29■■□□□ 1.32
CCM2-216ENST00000488727 LDHCP07864 332 aa23.29■■□□□ 1.32
CCM2-216ENST00000488727 BTDP43251 543 aa23.29■■□□□ 1.32
CCM2-216ENST00000488727 CNTROBQ8N137 903 aa23.29■■□□□ 1.32
CCM2-216ENST00000488727 TBC1D2Q9BYX2 928 aa23.29■■□□□ 1.32
CCM2-216ENST00000488727 TDRD3Q9H7E2 651 aaKnown RBP23.29■■□□□ 1.32
CCM2-216ENST00000488727 NFKBIBQ15653 356 aa23.28■■□□□ 1.32
CCM2-216ENST00000488727 GGA3Q9NZ52 723 aa23.28■■□□□ 1.32
CCM2-216ENST00000488727 PGAP2Q9UHJ9 254 aa23.28■■□□□ 1.32
CCM2-216ENST00000488727 CLRN2A0PK11 232 aa23.28■■□□□ 1.32
CCM2-216ENST00000488727 SDSP20132 328 aa23.28■■□□□ 1.32
CCM2-216ENST00000488727 ANGEL2Q5VTE6 544 aaKnown RBP23.28■■□□□ 1.32
CCM2-216ENST00000488727 TMED8Q6PL24 325 aaPredicted RBP23.28■■□□□ 1.32
CCM2-216ENST00000488727 CDK5RAP2Q96SN8 1893 aa23.27■■□□□ 1.32
CCM2-216ENST00000488727 UBE3CQ15386 1083 aa23.27■■□□□ 1.32
CCM2-216ENST00000488727 SPDYE2Q495Y8 402 aa23.27■■□□□ 1.32
CCM2-216ENST00000488727 CDC42EP5Q6NZY7 148 aa23.27■■□□□ 1.32
CCM2-216ENST00000488727 LDHDQ86WU2 507 aa23.27■■□□□ 1.32
CCM2-216ENST00000488727 MIGA1Q8NAN2 632 aa23.27■■□□□ 1.32
CCM2-216ENST00000488727 ZC3H15Q8WU90 426 aaKnown RBP23.27■■□□□ 1.32
CCM2-216ENST00000488727 AATFQ9NY61 560 aaKnown RBP eCLIP23.27■■□□□ 1.32
CCM2-216ENST00000488727 RNF113AO15541 343 aaKnown RBP23.26■■□□□ 1.31
CCM2-216ENST00000488727 DEKP35659 375 aaKnown RBP23.26■■□□□ 1.31
CCM2-216ENST00000488727 ZSCAN25Q6NSZ9 544 aa23.26■■□□□ 1.31
CCM2-216ENST00000488727 ZNF70Q9UC06 446 aaPredicted RBP23.26■■□□□ 1.31
CCM2-216ENST00000488727 SCAF8Q9UPN6 1271 aaKnown RBP23.26■■□□□ 1.31
CCM2-216ENST00000488727 CLEC11AQ9Y240 323 aa23.26■■□□□ 1.31
CCM2-216ENST00000488727 MYO1BO43795 1136 aa23.25■■□□□ 1.31
CCM2-216ENST00000488727 CDC45O75419 566 aa23.25■■□□□ 1.31
CCM2-216ENST00000488727 RHBDL3P58872 404 aa23.25■■□□□ 1.31
CCM2-216ENST00000488727 ZFYP08048 801 aaPredicted RBP23.25■■□□□ 1.31
CCM2-216ENST00000488727 CACNB3P54284 484 aa23.25■■□□□ 1.31
CCM2-216ENST00000488727 DYNLL1P63167 89 aaKnown RBP23.25■■□□□ 1.31
CCM2-216ENST00000488727 RFX7Q2KHR2 1363 aa23.24■■□□□ 1.31
CCM2-216ENST00000488727 PPP4CP60510 307 aa23.24■■□□□ 1.31
CCM2-216ENST00000488727 MAP1SQ66K74 1059 aaPredicted RBP23.24■■□□□ 1.31
CCM2-216ENST00000488727 RIOK1Q9BRS2 568 aaKnown RBP23.24■■□□□ 1.31
CCM2-216ENST00000488727 PUS7LQ9H0K6 701 aaKnown RBP23.24■■□□□ 1.31
CCM2-216ENST00000488727 USP40Q9NVE5 1235 aa23.24■■□□□ 1.31
CCM2-216ENST00000488727 FOCADQ5VW36 1801 aa23.23■■□□□ 1.31
CCM2-216ENST00000488727 OSBP2Q969R2 916 aa23.23■■□□□ 1.31
CCM2-216ENST00000488727 VEZTQ9HBM0 779 aa23.23■■□□□ 1.31
CCM2-216ENST00000488727 PITPNM2Q9BZ72 1349 aa23.23■■□□□ 1.31
CCM2-216ENST00000488727 LRRFIP1Q32MZ4 808 aaKnown RBP23.22■■□□□ 1.31
CCM2-216ENST00000488727 SH3RF3Q8TEJ3 882 aaPredicted RBP23.22■■□□□ 1.31
CCM2-216ENST00000488727 APPBP2Q92624 585 aa23.22■■□□□ 1.31
CCM2-216ENST00000488727 DCPSQ96C86 337 aaKnown RBP23.22■■□□□ 1.31
CCM2-216ENST00000488727 NOL10Q9BSC4 688 aaKnown RBP23.22■■□□□ 1.31
CCM2-216ENST00000488727 MAGEB6P1A0A0J9YX57 407 aa23.22■■□□□ 1.31
CCM2-216ENST00000488727 BAG3O95817 575 aa23.22■■□□□ 1.31
CCM2-216ENST00000488727 ZMYM1Q5SVZ6 1142 aa23.22■■□□□ 1.31
CCM2-216ENST00000488727 SEC62Q99442 399 aaKnown RBP23.22■■□□□ 1.31
CCM2-216ENST00000488727 WDHD1O75717 1129 aaPredicted RBP23.21■■□□□ 1.31
CCM2-216ENST00000488727 TOMM70O94826 608 aa23.21■■□□□ 1.31
CCM2-216ENST00000488727 NFIAQ12857 509 aa23.21■■□□□ 1.31
CCM2-216ENST00000488727 CHADLQ6NUI6 762 aa23.21■■□□□ 1.31
CCM2-216ENST00000488727 LCORLQ8N3X6 602 aa23.21■■□□□ 1.31
CCM2-216ENST00000488727 TCP10L2B9ZVM9 353 aa23.2■■□□□ 1.3
CCM2-216ENST00000488727 MBD4O95243 580 aa23.2■■□□□ 1.3
CCM2-216ENST00000488727 DLK2Q6UY11 383 aa23.2■■□□□ 1.3
CCM2-216ENST00000488727 TICAM2Q86XR7 235 aa23.2■■□□□ 1.3
CCM2-216ENST00000488727 SNX21Q969T3 373 aa23.2■■□□□ 1.3
CCM2-216ENST00000488727 FAM227BQ96M60 508 aa23.2■■□□□ 1.3
CCM2-216ENST00000488727 GLIS2Q9BZE0 524 aaPredicted RBP23.2■■□□□ 1.3
CCM2-216ENST00000488727 ARMT1Q9H993 441 aa23.2■■□□□ 1.3
CCM2-216ENST00000488727 A0A0D9SFI3 127 aa23.19■■□□□ 1.3
CCM2-216ENST00000488727 ADM5C9JUS6 153 aa23.19■■□□□ 1.3
CCM2-216ENST00000488727 M0R2C6 588 aa23.19■■□□□ 1.3
CCM2-216ENST00000488727 KRT26Q7Z3Y9 468 aa23.19■■□□□ 1.3
CCM2-216ENST00000488727 APOBEC3FQ8IUX4 373 aaKnown RBP23.19■■□□□ 1.3
CCM2-216ENST00000488727 DDX4Q9NQI0 724 aaKnown RBP23.19■■□□□ 1.3
CCM2-216ENST00000488727 TMOD2Q9NZR1 351 aa23.19■■□□□ 1.3
CCM2-216ENST00000488727 CNTNAP1P78357 1384 aa23.19■■□□□ 1.3
CCM2-216ENST00000488727 PLCG2P16885 1265 aa23.19■■□□□ 1.3
CCM2-216ENST00000488727 NMIQ13287 307 aaPredicted RBP23.19■■□□□ 1.3
CCM2-216ENST00000488727 TEX11Q8IYF3 940 aa23.19■■□□□ 1.3
CCM2-216ENST00000488727 RBM46Q8TBY0 533 aaKnown RBP23.19■■□□□ 1.3
CCM2-216ENST00000488727 IDI2Q9BXS1 227 aa23.19■■□□□ 1.3
CCM2-216ENST00000488727 FAM198AQ9UFP1 575 aa23.19■■□□□ 1.3
CCM2-216ENST00000488727 FKBP1CQ5VVH2 108 aa23.18■■□□□ 1.3
CCM2-216ENST00000488727 SULF1Q8IWU6 871 aa23.18■■□□□ 1.3
CCM2-216ENST00000488727 CDC37L1Q7L3B6 337 aa23.17■■□□□ 1.3
CCM2-216ENST00000488727 USP48Q86UV5 1035 aa23.17■■□□□ 1.3
CCM2-216ENST00000488727 SMC1BQ8NDV3 1235 aa23.17■■□□□ 1.3
CCM2-216ENST00000488727 AIDAQ96BJ3 306 aa23.17■■□□□ 1.3
CCM2-216ENST00000488727 DEFB129Q9H1M3 183 aa23.17■■□□□ 1.3
CCM2-216ENST00000488727 ITGBL1O95965 494 aaPredicted RBP23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 528 ms