RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 SOGA3Q5TF21 947 aa5.98□□□□□ -1.45
PTCD3-216ENST00000487043 FBXL19Q6PCT2 694 aa5.98□□□□□ -1.45
PTCD3-216ENST00000487043 KRTAP1-3Q8IUG1 177 aa5.98□□□□□ -1.45
PTCD3-216ENST00000487043 TMEM102Q8N9M5 508 aaPredicted RBP5.98□□□□□ -1.45
PTCD3-216ENST00000487043 PHC3Q8NDX5 983 aa5.98□□□□□ -1.45
PTCD3-216ENST00000487043 PUS7Q96PZ0 661 aaKnown RBP5.98□□□□□ -1.45
PTCD3-216ENST00000487043 BHLHE41Q9C0J9 482 aaPredicted RBP5.98□□□□□ -1.45
PTCD3-216ENST00000487043 ZSWIM4Q9H7M6 989 aa5.98□□□□□ -1.45
PTCD3-216ENST00000487043 FRRS1LQ9P0K9 344 aa5.98□□□□□ -1.45
PTCD3-216ENST00000487043 GPN3Q9UHW5 284 aaPredicted RBP5.98□□□□□ -1.45
PTCD3-216ENST00000487043 EFR3BQ9Y2G0 817 aa5.98□□□□□ -1.45
PTCD3-216ENST00000487043 GHRHP01286 108 aa5.97□□□□□ -1.45
PTCD3-216ENST00000487043 ZNF157P51786 506 aaPredicted RBP5.97□□□□□ -1.45
PTCD3-216ENST00000487043 GPLD1P80108 840 aa5.97□□□□□ -1.45
PTCD3-216ENST00000487043 GRIK5Q16478 980 aa5.97□□□□□ -1.45
PTCD3-216ENST00000487043 SNAP47Q5SQN1 464 aa5.97□□□□□ -1.45
PTCD3-216ENST00000487043 TTBK2Q6IQ55 1244 aa5.97□□□□□ -1.45
PTCD3-216ENST00000487043 IGF2-ASQ6U949 168 aa5.97□□□□□ -1.45
PTCD3-216ENST00000487043 NOP9Q86U38 636 aaKnown RBP5.97□□□□□ -1.45
PTCD3-216ENST00000487043 TRPM4Q8TD43 1214 aa5.97□□□□□ -1.45
PTCD3-216ENST00000487043 SEC16BQ96JE7 1060 aa5.97□□□□□ -1.45
PTCD3-216ENST00000487043 RHOVQ96L33 236 aa5.97□□□□□ -1.45
PTCD3-216ENST00000487043 NECAB3Q96P71 396 aaPredicted RBP5.97□□□□□ -1.45
PTCD3-216ENST00000487043 PBX4Q9BYU1 374 aa5.97□□□□□ -1.45
PTCD3-216ENST00000487043 ZNF576Q9H609 170 aa5.97□□□□□ -1.45
PTCD3-216ENST00000487043 SEC31BQ9NQW1 1179 aa5.97□□□□□ -1.45
PTCD3-216ENST00000487043 GINM1Q9NU53 330 aa5.97□□□□□ -1.45
PTCD3-216ENST00000487043 SUPT16HQ9Y5B9 1047 aaKnown RBP5.97□□□□□ -1.45
PTCD3-216ENST00000487043 CADPSQ9ULU8 1353 aa5.96□□□□□ -1.45
PTCD3-216ENST00000487043 ENC1O14682 589 aa5.96□□□□□ -1.46
PTCD3-216ENST00000487043 PAGE1O75459 146 aa5.96□□□□□ -1.46
PTCD3-216ENST00000487043 HMGB1P09429 215 aaKnown RBP5.96□□□□□ -1.46
PTCD3-216ENST00000487043 EIF2AK2P19525 551 aaKnown RBP5.96□□□□□ -1.46
PTCD3-216ENST00000487043 CANXP27824 592 aaKnown RBP5.96□□□□□ -1.46
PTCD3-216ENST00000487043 FAAP100Q0VG06 881 aa5.96□□□□□ -1.46
PTCD3-216ENST00000487043 CAMK2GQ13555 558 aaPredicted RBP5.96□□□□□ -1.46
PTCD3-216ENST00000487043 CEP135Q66GS9 1140 aa5.96□□□□□ -1.46
PTCD3-216ENST00000487043 CKAP2LQ8IYA6 745 aa5.96□□□□□ -1.46
PTCD3-216ENST00000487043 GOLM1Q8NBJ4 401 aa5.96□□□□□ -1.46
PTCD3-216ENST00000487043 NT5C1AQ9BXI3 368 aa5.96□□□□□ -1.46
PTCD3-216ENST00000487043 SMG9Q9H0W8 520 aaKnown RBP5.96□□□□□ -1.46
PTCD3-216ENST00000487043 MUC3BQ9H195 1237 aa5.96□□□□□ -1.46
PTCD3-216ENST00000487043 RBSNQ9H1K0 784 aa5.96□□□□□ -1.46
PTCD3-216ENST00000487043 OSBPL2Q9H1P3 480 aa5.96□□□□□ -1.46
PTCD3-216ENST00000487043 PIF1Q9H611 641 aa5.96□□□□□ -1.46
PTCD3-216ENST00000487043 UBP1Q9NZI7 540 aa5.96□□□□□ -1.46
PTCD3-216ENST00000487043 RNF112Q9ULX5 631 aa5.96□□□□□ -1.46
PTCD3-216ENST00000487043 MRVI1Q9Y6F6 885 aa5.96□□□□□ -1.46
PTCD3-216ENST00000487043 HSP90B1P14625 803 aaKnown RBP5.95□□□□□ -1.46
PTCD3-216ENST00000487043 TFE3P19532 575 aaPredicted RBP5.95□□□□□ -1.46
PTCD3-216ENST00000487043 LMNB1P20700 586 aa5.95□□□□□ -1.46
PTCD3-216ENST00000487043 GARTP22102 1010 aa5.95□□□□□ -1.46
PTCD3-216ENST00000487043 LMNB2Q03252 620 aa5.95□□□□□ -1.46
PTCD3-216ENST00000487043 BMS1Q14692 1282 aaKnown RBP5.95□□□□□ -1.46
PTCD3-216ENST00000487043 LCE3BQ5TA77 95 aa5.95□□□□□ -1.46
PTCD3-216ENST00000487043 CPLX3Q8WVH0 158 aa5.95□□□□□ -1.46
PTCD3-216ENST00000487043 MEGF10Q96KG7 1140 aa5.95□□□□□ -1.46
PTCD3-216ENST00000487043 POP1Q99575 1024 aaKnown RBP5.95□□□□□ -1.46
PTCD3-216ENST00000487043 ZNF408Q9H9D4 720 aa5.95□□□□□ -1.46
PTCD3-216ENST00000487043 PCMTD2Q9NV79 361 aa5.95□□□□□ -1.46
PTCD3-216ENST00000487043 GREM1O60565 184 aa5.94□□□□□ -1.46
PTCD3-216ENST00000487043 SMNDC1O75940 238 aaKnown RBP eCLIP5.94□□□□□ -1.461e-29■■□□□ 14.3
PTCD3-216ENST00000487043 ETFBP38117 255 aa5.94□□□□□ -1.46
PTCD3-216ENST00000487043 APOBRQ0VD83 1088 aa5.94□□□□□ -1.46
PTCD3-216ENST00000487043 RPS26P11Q5JNZ5 115 aaPredicted RBP5.94□□□□□ -1.46
PTCD3-216ENST00000487043 PCNX4Q63HM2 1172 aa5.94□□□□□ -1.46
PTCD3-216ENST00000487043 AGMOQ6ZNB7 445 aa5.94□□□□□ -1.46
PTCD3-216ENST00000487043 PRR23CQ6ZRP0 262 aa5.94□□□□□ -1.46
PTCD3-216ENST00000487043 TTC9Q92623 222 aa5.94□□□□□ -1.46
PTCD3-216ENST00000487043 NKD1Q969G9 470 aa5.94□□□□□ -1.46
PTCD3-216ENST00000487043 KCNQ5Q9NR82 932 aa5.94□□□□□ -1.46
PTCD3-216ENST00000487043 TMEM39AQ9NV64 488 aa5.94□□□□□ -1.46
PTCD3-216ENST00000487043 TMA7Q9Y2S6 64 aaKnown RBP5.94□□□□□ -1.46
PTCD3-216ENST00000487043 TLDC2A0PJX2 215 aa5.93□□□□□ -1.46
PTCD3-216ENST00000487043 TLR3O15455 904 aaKnown RBP5.93□□□□□ -1.46
PTCD3-216ENST00000487043 DEAF1O75398 565 aaPredicted RBP5.93□□□□□ -1.46
PTCD3-216ENST00000487043 CRKP46108 304 aa5.93□□□□□ -1.46
PTCD3-216ENST00000487043 SOX9P48436 509 aa5.93□□□□□ -1.46
PTCD3-216ENST00000487043 PPP2R3AQ06190 1150 aa5.93□□□□□ -1.46
PTCD3-216ENST00000487043 BSNDQ8WZ55 320 aa5.93□□□□□ -1.46
PTCD3-216ENST00000487043 JARID2Q92833 1246 aaPredicted RBP5.93□□□□□ -1.46
PTCD3-216ENST00000487043 KRTAP4-12Q9BQ66 201 aa5.93□□□□□ -1.46
PTCD3-216ENST00000487043 CLEC4MQ9H2X3 399 aaPredicted RBP5.93□□□□□ -1.46
PTCD3-216ENST00000487043 AKTIPQ9H8T0 292 aa5.93□□□□□ -1.46
PTCD3-216ENST00000487043 PCDHB5Q9Y5E4 795 aa5.93□□□□□ -1.46
PTCD3-216ENST00000487043 CECR2Q9BXF3 1484 aa5.93□□□□□ -1.46
PTCD3-216ENST00000487043 ALX3O95076 343 aa5.92□□□□□ -1.46
PTCD3-216ENST00000487043 RPS26P62854 115 aaKnown RBP5.92□□□□□ -1.46
PTCD3-216ENST00000487043 PCDH1Q08174 1060 aa5.92□□□□□ -1.46
PTCD3-216ENST00000487043 COL9A2Q14055 689 aaPredicted RBP5.92□□□□□ -1.46
PTCD3-216ENST00000487043 SEZ6Q53EL9 994 aa5.92□□□□□ -1.46
PTCD3-216ENST00000487043 RASIP1Q5U651 963 aa5.92□□□□□ -1.46
PTCD3-216ENST00000487043 GDF6Q6KF10 455 aaPredicted RBP5.92□□□□□ -1.46
PTCD3-216ENST00000487043 BNC2Q6ZN30 1099 aaPredicted RBP5.92□□□□□ -1.46
PTCD3-216ENST00000487043 FAM196AQ6ZSG2 479 aa5.92□□□□□ -1.46
PTCD3-216ENST00000487043 ANKS3Q6ZW76 656 aa5.92□□□□□ -1.46
PTCD3-216ENST00000487043 FBXO27Q8NI29 283 aa5.92□□□□□ -1.46
PTCD3-216ENST00000487043 PLD4Q96BZ4 506 aa5.92□□□□□ -1.46
PTCD3-216ENST00000487043 ANAPC16Q96DE5 110 aa5.92□□□□□ -1.46
PTCD3-216ENST00000487043 LACRTQ9GZZ8 138 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms