RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 PLIN2Q99541 437 aa18.53■□□□□ 0.56
COL7A1-210ENST00000487017 FERMT1Q9BQL6 677 aa18.53■□□□□ 0.56
COL7A1-210ENST00000487017 TUBB2BQ9BVA1 445 aa18.53■□□□□ 0.56
COL7A1-210ENST00000487017 GTF2A1P52655 376 aaPredicted RBP18.52■□□□□ 0.56
COL7A1-210ENST00000487017 FAM76AQ8TAV0 307 aa18.52■□□□□ 0.56
COL7A1-210ENST00000487017 TTF2Q9UNY4 1162 aaKnown RBP18.52■□□□□ 0.56
COL7A1-210ENST00000487017 KIF21AQ7Z4S6 1674 aa18.52■□□□□ 0.56
COL7A1-210ENST00000487017 CUTAO60888 179 aa18.52■□□□□ 0.56
COL7A1-210ENST00000487017 CDC37L1Q7L3B6 337 aa18.52■□□□□ 0.56
COL7A1-210ENST00000487017 NYXQ9GZU5 481 aa18.52■□□□□ 0.56
COL7A1-210ENST00000487017 NLRP12P59046 1061 aa18.52■□□□□ 0.56
COL7A1-210ENST00000487017 C17orf53Q8N3J3 647 aaPredicted RBP18.52■□□□□ 0.56
COL7A1-210ENST00000487017 NAPGQ99747 312 aaPredicted RBP18.52■□□□□ 0.56
COL7A1-210ENST00000487017 PLCG2P16885 1265 aa18.52■□□□□ 0.55
COL7A1-210ENST00000487017 ANGEL1Q9UNK9 670 aaKnown RBP18.52■□□□□ 0.55
COL7A1-210ENST00000487017 PPP1R14CQ8TAE6 165 aa18.52■□□□□ 0.55
COL7A1-210ENST00000487017 FBF1Q8TES7 1133 aa18.52■□□□□ 0.55
COL7A1-210ENST00000487017 PAIP2Q9BPZ3 127 aaKnown RBP18.52■□□□□ 0.55
COL7A1-210ENST00000487017 TMEM63CQ9P1W3 806 aa18.52■□□□□ 0.55
COL7A1-210ENST00000487017 FAM13AO94988 1023 aa18.51■□□□□ 0.55
COL7A1-210ENST00000487017 OTUD6BQ8N6M0 293 aa18.51■□□□□ 0.55
COL7A1-210ENST00000487017 ACSBG1Q96GR2 724 aa18.51■□□□□ 0.55
COL7A1-210ENST00000487017 SELENOSQ9BQE4 189 aa18.51■□□□□ 0.55
COL7A1-210ENST00000487017 SPDYE3A6NKU9 549 aa18.51■□□□□ 0.55
COL7A1-210ENST00000487017 F8W031 263 aaPredicted RBP18.51■□□□□ 0.55
COL7A1-210ENST00000487017 PLCD1P51178 756 aa18.51■□□□□ 0.55
COL7A1-210ENST00000487017 APPBP2Q92624 585 aa18.51■□□□□ 0.55
COL7A1-210ENST00000487017 PTPRTO14522 1441 aa18.51■□□□□ 0.55
COL7A1-210ENST00000487017 ZNF790Q6PG37 636 aa18.51■□□□□ 0.55
COL7A1-210ENST00000487017 KLHDC4Q8TBB5 520 aa18.51■□□□□ 0.55
COL7A1-210ENST00000487017 TTC14Q96N46 770 aa18.51■□□□□ 0.55
COL7A1-210ENST00000487017 CYP26C1Q6V0L0 522 aa18.5■□□□□ 0.55
COL7A1-210ENST00000487017 RGS22Q8NE09 1264 aa18.5■□□□□ 0.55
COL7A1-210ENST00000487017 ZNF622Q969S3 477 aaKnown RBP eCLIP18.5■□□□□ 0.55
COL7A1-210ENST00000487017 PPP1R9BQ96SB3 815 aa18.5■□□□□ 0.55
COL7A1-210ENST00000487017 WDHD1O75717 1129 aaPredicted RBP18.5■□□□□ 0.55
COL7A1-210ENST00000487017 ABCC4O15439 1325 aa18.5■□□□□ 0.55
COL7A1-210ENST00000487017 PCDH11XQ9BZA7 1347 aa18.5■□□□□ 0.55
COL7A1-210ENST00000487017 PCDH11YQ9BZA8 1340 aa18.5■□□□□ 0.55
COL7A1-210ENST00000487017 TMEM110-MUSTN1A8MSY1 372 aa18.5■□□□□ 0.55
COL7A1-210ENST00000487017 ZEB2O60315 1214 aa18.5■□□□□ 0.55
COL7A1-210ENST00000487017 SV2BQ7L1I2 683 aa18.5■□□□□ 0.55
COL7A1-210ENST00000487017 HS2ST1Q7LGA3 356 aa18.5■□□□□ 0.55
COL7A1-210ENST00000487017 ZNF202O95125 648 aa18.5■□□□□ 0.55
COL7A1-210ENST00000487017 CFAP58Q5T655 872 aa18.5■□□□□ 0.55
COL7A1-210ENST00000487017 KBTBD3Q8NAB2 608 aa18.5■□□□□ 0.55
COL7A1-210ENST00000487017 MLKLQ8NB16 471 aa18.5■□□□□ 0.55
COL7A1-210ENST00000487017 NOC4LQ9BVI4 516 aaKnown RBP18.5■□□□□ 0.55
COL7A1-210ENST00000487017 IQCGQ9H095 443 aaKnown RBP18.5■□□□□ 0.55
COL7A1-210ENST00000487017 SYNCQ9H7C4 482 aa18.5■□□□□ 0.55
COL7A1-210ENST00000487017 TM6SF1Q9BZW5 370 aa18.49■□□□□ 0.55
COL7A1-210ENST00000487017 VPS16Q9H269 839 aa18.49■□□□□ 0.55
COL7A1-210ENST00000487017 SYNRGQ9UMZ2 1314 aa18.49■□□□□ 0.55
COL7A1-210ENST00000487017 KIAA0232Q92628 1395 aa18.49■□□□□ 0.55
COL7A1-210ENST00000487017 DNAJC21Q5F1R6 531 aaKnown RBP18.49■□□□□ 0.55
COL7A1-210ENST00000487017 SUCLG2Q96I99 432 aa18.49■□□□□ 0.55
COL7A1-210ENST00000487017 GRIPAP1Q4V328 841 aa18.49■□□□□ 0.55
COL7A1-210ENST00000487017 ZBTB9Q96C00 473 aa18.49■□□□□ 0.55
COL7A1-210ENST00000487017 XAGE2Q96GT9 111 aa18.49■□□□□ 0.55
COL7A1-210ENST00000487017 TSNARE1Q96NA8 513 aa18.49■□□□□ 0.55
COL7A1-210ENST00000487017 ANKRD2Q9GZV1 360 aa18.49■□□□□ 0.55
COL7A1-210ENST00000487017 SSH2Q76I76 1423 aa18.49■□□□□ 0.55
COL7A1-210ENST00000487017 GSPT1P15170 499 aaKnown RBP18.48■□□□□ 0.55
COL7A1-210ENST00000487017 CABLES1Q8TDN4 633 aa18.48■□□□□ 0.55
COL7A1-210ENST00000487017 ATP2A1O14983 1001 aa18.48■□□□□ 0.55
COL7A1-210ENST00000487017 POLR2DO15514 142 aaKnown RBP18.48■□□□□ 0.55
COL7A1-210ENST00000487017 TBC1D8BQ0IIM8 1120 aa18.48■□□□□ 0.55
COL7A1-210ENST00000487017 TTC31Q49AM3 519 aaPredicted RBP18.48■□□□□ 0.55
COL7A1-210ENST00000487017 ELF2Q15723 593 aa18.48■□□□□ 0.55
COL7A1-210ENST00000487017 CARD6Q9BX69 1037 aa18.48■□□□□ 0.55
COL7A1-210ENST00000487017 GPAA1O43292 621 aa18.48■□□□□ 0.55
COL7A1-210ENST00000487017 OTUD7BQ6GQQ9 843 aa18.48■□□□□ 0.55
COL7A1-210ENST00000487017 PPM1EQ8WY54 764 aa18.48■□□□□ 0.55
COL7A1-210ENST00000487017 LDHBP07195 334 aaKnown RBP18.48■□□□□ 0.55
COL7A1-210ENST00000487017 PARP1P09874 1014 aaKnown RBP18.48■□□□□ 0.55
COL7A1-210ENST00000487017 GSTA5Q7RTV2 222 aa18.48■□□□□ 0.55
COL7A1-210ENST00000487017 DIS3L2Q8IYB7 885 aaKnown RBP18.48■□□□□ 0.55
COL7A1-210ENST00000487017 NAP1L4Q99733 375 aaKnown RBP18.48■□□□□ 0.55
COL7A1-210ENST00000487017 DENND2AQ9ULE3 1009 aa18.48■□□□□ 0.55
COL7A1-210ENST00000487017 PLXNC1O60486 1568 aa18.47■□□□□ 0.55
COL7A1-210ENST00000487017 CPLX4Q7Z7G2 160 aa18.47■□□□□ 0.55
COL7A1-210ENST00000487017 MTRF1LQ9UGC7 380 aaKnown RBP18.47■□□□□ 0.55
COL7A1-210ENST00000487017 ITGA6P23229 1130 aa18.47■□□□□ 0.55
COL7A1-210ENST00000487017 CCDC65Q8IXS2 484 aa18.47■□□□□ 0.55
COL7A1-210ENST00000487017 PDE4DQ08499 809 aa18.47■□□□□ 0.55
COL7A1-210ENST00000487017 CCDC6Q16204 474 aa18.47■□□□□ 0.55
COL7A1-210ENST00000487017 LETM2Q2VYF4 491 aa18.47■□□□□ 0.55
COL7A1-210ENST00000487017 ARMT1Q9H993 441 aa18.47■□□□□ 0.55
COL7A1-210ENST00000487017 ARHGAP6O43182 974 aa18.47■□□□□ 0.55
COL7A1-210ENST00000487017 RPL13P26373 211 aaKnown RBP18.47■□□□□ 0.55
COL7A1-210ENST00000487017 PUM3Q15397 648 aaKnown RBP18.47■□□□□ 0.55
COL7A1-210ENST00000487017 FAM89AQ96GI7 184 aa18.47■□□□□ 0.55
COL7A1-210ENST00000487017 TPTE2Q6XPS3 522 aa18.46■□□□□ 0.55
COL7A1-210ENST00000487017 KDM5AP29375 1690 aaKnown RBP18.46■□□□□ 0.55
COL7A1-210ENST00000487017 FMNL3Q8IVF7 1028 aa18.46■□□□□ 0.55
COL7A1-210ENST00000487017 PIK3AP1Q6ZUJ8 805 aa18.46■□□□□ 0.55
COL7A1-210ENST00000487017 AFAP1L1Q8TED9 768 aa18.46■□□□□ 0.55
COL7A1-210ENST00000487017 JAK2O60674 1132 aa18.46■□□□□ 0.55
COL7A1-210ENST00000487017 EEF2P13639 858 aaKnown RBP18.46■□□□□ 0.55
COL7A1-210ENST00000487017 CNNM4Q6P4Q7 775 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms