RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 GSX1Q9H4S2 264 aaPredicted RBP8.11□□□□□ -1.11
SMC4-218ENST00000486711 ACSS3Q9H6R3 686 aa8.11□□□□□ -1.11
SMC4-218ENST00000486711 FAM105AQ9NUU6 356 aa8.11□□□□□ -1.11
SMC4-218ENST00000486711 TMEM238LA0A1B0GVL6 79 aa8.1□□□□□ -1.11
SMC4-218ENST00000486711 BRD1O95696 1058 aa8.1□□□□□ -1.11
SMC4-218ENST00000486711 PRNPP04156 253 aa8.1□□□□□ -1.11
SMC4-218ENST00000486711 TXKP42681 527 aa8.1□□□□□ -1.11
SMC4-218ENST00000486711 ASPAP45381 313 aa8.1□□□□□ -1.11
SMC4-218ENST00000486711 DUSP27Q5VZP5 1158 aa8.1□□□□□ -1.11
SMC4-218ENST00000486711 FMNL2Q96PY5 1086 aa8.1□□□□□ -1.11
SMC4-218ENST00000486711 WDR18Q9BV38 432 aa8.1□□□□□ -1.11
SMC4-218ENST00000486711 RBCK1Q9BYM8 510 aa8.1□□□□□ -1.11
SMC4-218ENST00000486711 GOLGA2P5Q9HBQ8 144 aa8.1□□□□□ -1.11
SMC4-218ENST00000486711 CCDC39Q9UFE4 941 aa8.1□□□□□ -1.11
SMC4-218ENST00000486711 FAM170BA6NMN3 283 aa8.09□□□□□ -1.11
SMC4-218ENST00000486711 HNRNPUQ00839 825 aaKnown RBP eCLIP8.09□□□□□ -1.11
SMC4-218ENST00000486711 KRTAP1-3Q8IUG1 177 aa8.09□□□□□ -1.11
SMC4-218ENST00000486711 FBXL18Q96ME1 805 aa8.09□□□□□ -1.11
SMC4-218ENST00000486711 ADGRE2Q9UHX3 823 aa8.09□□□□□ -1.11
SMC4-218ENST00000486711 KCNA1Q09470 495 aa8.08□□□□□ -1.12
SMC4-218ENST00000486711 GRM2Q14416 872 aa8.08□□□□□ -1.12
SMC4-218ENST00000486711 LCE3BQ5TA77 95 aa8.08□□□□□ -1.12
SMC4-218ENST00000486711 BSDC1Q9NW68 430 aaPredicted RBP8.08□□□□□ -1.12
SMC4-218ENST00000486711 ABI1Q8IZP0 508 aa8.07□□□□□ -1.12
SMC4-218ENST00000486711 GLIS3Q8NEA6 775 aa8.07□□□□□ -1.12
SMC4-218ENST00000486711 DAGLAQ9Y4D2 1042 aa8.07□□□□□ -1.12
SMC4-218ENST00000486711 SOWAHDA6NJG2 315 aa8.06□□□□□ -1.12
SMC4-218ENST00000486711 FAAP100Q0VG06 881 aa8.06□□□□□ -1.12
SMC4-218ENST00000486711 SEZ6L2Q6UXD5 910 aa8.06□□□□□ -1.12
SMC4-218ENST00000486711 DTHD1Q6ZMT9 781 aa8.06□□□□□ -1.12
SMC4-218ENST00000486711 ZNF765Q7L2R6 523 aa8.06□□□□□ -1.12
SMC4-218ENST00000486711 EPS8L3Q8TE67 593 aaKnown RBP8.06□□□□□ -1.12
SMC4-218ENST00000486711 NLRP2Q9NX02 1062 aa8.06□□□□□ -1.12
SMC4-218ENST00000486711 PPP4R2Q9NY27 417 aa8.06□□□□□ -1.12
SMC4-218ENST00000486711 PPP1R9AQ9ULJ8 1098 aa8.06□□□□□ -1.12
SMC4-218ENST00000486711 RNF114Q9Y508 228 aa8.06□□□□□ -1.12
SMC4-218ENST00000486711 TMPRSS2O15393 492 aa8.05□□□□□ -1.12
SMC4-218ENST00000486711 SLFN14P0C7P3 912 aa8.05□□□□□ -1.12
SMC4-218ENST00000486711 ZNF157P51786 506 aaPredicted RBP8.05□□□□□ -1.12
SMC4-218ENST00000486711 ATXN3LQ9H3M9 355 aa8.05□□□□□ -1.12
SMC4-218ENST00000486711 CCDC86Q9H6F5 360 aaKnown RBP8.05□□□□□ -1.12
SMC4-218ENST00000486711 LRRC4CQ9HCJ2 640 aa8.05□□□□□ -1.12
SMC4-218ENST00000486711 C1GALT1Q9NS00 363 aa8.05□□□□□ -1.12
SMC4-218ENST00000486711 KRT82Q9NSB4 513 aa8.05□□□□□ -1.12
SMC4-218ENST00000486711 CCDC9Q9Y3X0 531 aaKnown RBP8.05□□□□□ -1.12
SMC4-218ENST00000486711 XRCC5P13010 732 aaKnown RBP8.04□□□□□ -1.12
SMC4-218ENST00000486711 LIG1P18858 919 aa8.04□□□□□ -1.12
SMC4-218ENST00000486711 FCGRTP55899 365 aa8.04□□□□□ -1.12
SMC4-218ENST00000486711 PPP2R3AQ06190 1150 aa8.04□□□□□ -1.12
SMC4-218ENST00000486711 KRTAP19-1Q8IUB9 90 aa8.04□□□□□ -1.12
SMC4-218ENST00000486711 TP53INP2Q8IXH6 220 aa8.04□□□□□ -1.12
SMC4-218ENST00000486711 PIDD1Q9HB75 910 aa8.04□□□□□ -1.12
SMC4-218ENST00000486711 CRIM1Q9NZV1 1036 aa8.04□□□□□ -1.12
SMC4-218ENST00000486711 GPN3Q9UHW5 284 aaPredicted RBP8.04□□□□□ -1.12
SMC4-218ENST00000486711 DCTN4Q9UJW0 460 aa8.04□□□□□ -1.12
SMC4-218ENST00000486711 GSTP1P09211 210 aaKnown RBP8.03□□□□□ -1.12
SMC4-218ENST00000486711 ID3Q02535 119 aa8.03□□□□□ -1.12
SMC4-218ENST00000486711 OGFOD3Q6PK18 319 aa8.03□□□□□ -1.12
SMC4-218ENST00000486711 NFXL1Q6ZNB6 911 aa8.03□□□□□ -1.12
SMC4-218ENST00000486711 TMC7Q7Z402 723 aa8.03□□□□□ -1.12
SMC4-218ENST00000486711 AGBL5Q8NDL9 886 aa8.03□□□□□ -1.12
SMC4-218ENST00000486711 FLCNQ8NFG4 579 aa8.03□□□□□ -1.12
SMC4-218ENST00000486711 ZC3H12CQ9C0D7 883 aaKnown RBP8.03□□□□□ -1.12
SMC4-218ENST00000486711 TMEM39AQ9NV64 488 aa8.03□□□□□ -1.12
SMC4-218ENST00000486711 BIN2Q9UBW5 565 aaPredicted RBP8.03□□□□□ -1.12
SMC4-218ENST00000486711 ZC3H7BQ9UGR2 993 aaKnown RBP8.03□□□□□ -1.12
SMC4-218ENST00000486711 GNEQ9Y223 722 aaKnown RBP8.03□□□□□ -1.12
SMC4-218ENST00000486711 DYNC1LI2O43237 492 aaPredicted RBP8.02□□□□□ -1.13
SMC4-218ENST00000486711 KIF4BQ2VIQ3 1234 aa8.02□□□□□ -1.13
SMC4-218ENST00000486711 CYP27C1Q4G0S4 372 aa8.02□□□□□ -1.13
SMC4-218ENST00000486711 WDR89Q96FK6 387 aaPredicted RBP8.02□□□□□ -1.13
SMC4-218ENST00000486711 LGR6Q9HBX8 967 aa8.02□□□□□ -1.13
SMC4-218ENST00000486711 ZNF862O60290 1169 aa8.01□□□□□ -1.13
SMC4-218ENST00000486711 FANCD2OSQ96PS1 177 aa8.01□□□□□ -1.13
SMC4-218ENST00000486711 BCO2Q9BYV7 579 aa8.01□□□□□ -1.13
SMC4-218ENST00000486711 GZF1Q9H116 711 aaPredicted RBP8.01□□□□□ -1.13
SMC4-218ENST00000486711 PI16Q6UXB8 463 aa8□□□□□ -1.13
SMC4-218ENST00000486711 CBLL1Q75N03 491 aa8□□□□□ -1.13
SMC4-218ENST00000486711 PCDHGC5Q9Y5F6 944 aa8□□□□□ -1.13
SMC4-218ENST00000486711 TMCO4Q5TGY1 634 aa7.99□□□□□ -1.13
SMC4-218ENST00000486711 PDZD3Q86UT5 571 aa7.99□□□□□ -1.13
SMC4-218ENST00000486711 SMYD4Q8IYR2 804 aaPredicted RBP7.99□□□□□ -1.13
SMC4-218ENST00000486711 STK11IPQ8N1F8 1099 aa7.99□□□□□ -1.13
SMC4-218ENST00000486711 KCNB2Q92953 911 aa7.99□□□□□ -1.13
SMC4-218ENST00000486711 PAK6Q9NQU5 681 aaPredicted RBP7.99□□□□□ -1.13
SMC4-218ENST00000486711 PNMA6FA0A0J9YX94 578 aa7.98□□□□□ -1.13
SMC4-218ENST00000486711 MAPK1P28482 360 aa7.98□□□□□ -1.13
SMC4-218ENST00000486711 CDK5R2Q13319 367 aa7.98□□□□□ -1.13
SMC4-218ENST00000486711 SULF2Q8IWU5 870 aa7.98□□□□□ -1.13
SMC4-218ENST00000486711 DISC1Q9NRI5 854 aa7.98□□□□□ -1.13
SMC4-218ENST00000486711 SLC5A6Q9Y289 635 aa7.98□□□□□ -1.13
SMC4-218ENST00000486711 AKAP2Q9Y2D5 859 aa7.98□□□□□ -1.13
SMC4-218ENST00000486711 IVNS1ABPQ9Y6Y0 642 aa7.98□□□□□ -1.13
SMC4-218ENST00000486711 TREHO43280 583 aa7.97□□□□□ -1.13
SMC4-218ENST00000486711 RNGTTO60942 597 aaKnown RBP7.97□□□□□ -1.13
SMC4-218ENST00000486711 FAM87AP0C7U9 286 aa7.97□□□□□ -1.13
SMC4-218ENST00000486711 YBX3P16989 372 aaKnown RBP eCLIP7.97□□□□□ -1.13
SMC4-218ENST00000486711 PLCB3Q01970 1234 aa7.97□□□□□ -1.13
SMC4-218ENST00000486711 DSC3Q14574 896 aa7.97□□□□□ -1.13
SMC4-218ENST00000486711 TTLL4Q14679 1199 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms