RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 ZMYND10O75800 440 aa7.16□□□□□ -1.26
CUX1-208ENST00000485792 SASH1O94885 1247 aa7.16□□□□□ -1.26
CUX1-208ENST00000485792 PDE8BO95263 885 aa7.16□□□□□ -1.26
CUX1-208ENST00000485792 UBTFL1P0CB47 393 aaPredicted RBP7.16□□□□□ -1.26
CUX1-208ENST00000485792 PTPREP23469 700 aa7.16□□□□□ -1.26
CUX1-208ENST00000485792 FKBP1AP62942 108 aaKnown RBP7.16□□□□□ -1.26
CUX1-208ENST00000485792 MMRN1Q13201 1228 aa7.16□□□□□ -1.26
CUX1-208ENST00000485792 SCARF1Q14162 830 aa7.16□□□□□ -1.26
CUX1-208ENST00000485792 STRIP1Q5VSL9 837 aa7.16□□□□□ -1.26
CUX1-208ENST00000485792 CST9Q5W186 159 aa7.16□□□□□ -1.26
CUX1-208ENST00000485792 PI16Q6UXB8 463 aa7.16□□□□□ -1.26
CUX1-208ENST00000485792 TDRD7Q8NHU6 1098 aaKnown RBP7.16□□□□□ -1.26
CUX1-208ENST00000485792 FAM84BQ96KN1 310 aaPredicted RBP7.16□□□□□ -1.26
CUX1-208ENST00000485792 CD209Q9NNX6 404 aa7.16□□□□□ -1.26
CUX1-208ENST00000485792 ADARB2Q9NS39 739 aaKnown RBP7.16□□□□□ -1.26
CUX1-208ENST00000485792 CHMP3Q9Y3E7 222 aa7.16□□□□□ -1.26
CUX1-208ENST00000485792 PTPRFP10586 1907 aa7.15□□□□□ -1.26
CUX1-208ENST00000485792 USP17L3A6NCW0 530 aa7.15□□□□□ -1.26
CUX1-208ENST00000485792 USP17L4A6NCW7 530 aa7.15□□□□□ -1.26
CUX1-208ENST00000485792 HIC1Q14526 733 aa7.15□□□□□ -1.26
CUX1-208ENST00000485792 TBC1D10BQ4KMP7 808 aaPredicted RBP7.15□□□□□ -1.26
CUX1-208ENST00000485792 CEP85Q6P2H3 762 aa7.15□□□□□ -1.26
CUX1-208ENST00000485792 RSBN1LQ6PCB5 846 aaPredicted RBP7.15□□□□□ -1.26
CUX1-208ENST00000485792 USP17L1Q7RTZ2 530 aa7.15□□□□□ -1.26
CUX1-208ENST00000485792 DZIP1LQ8IYY4 767 aaKnown RBP7.15□□□□□ -1.26
CUX1-208ENST00000485792 SSH3Q8TE77 659 aa7.15□□□□□ -1.26
CUX1-208ENST00000485792 GLIS2Q9BZE0 524 aaPredicted RBP7.15□□□□□ -1.26
CUX1-208ENST00000485792 SIL1Q9H173 461 aa7.15□□□□□ -1.26
CUX1-208ENST00000485792 NPDC1Q9NQX5 325 aaPredicted RBP7.15□□□□□ -1.26
CUX1-208ENST00000485792 CNOT7Q9UIV1 285 aaKnown RBP7.15□□□□□ -1.26
CUX1-208ENST00000485792 IQSEC3Q9UPP2 1182 aaPredicted RBP7.15□□□□□ -1.26
CUX1-208ENST00000485792 SLURP2P0DP57 97 aa7.14□□□□□ -1.27
CUX1-208ENST00000485792 MYH1P12882 1939 aa7.14□□□□□ -1.27
CUX1-208ENST00000485792 PHKA1P46020 1223 aa7.14□□□□□ -1.27
CUX1-208ENST00000485792 APLP1P51693 650 aa7.14□□□□□ -1.27
CUX1-208ENST00000485792 NBPF9Q3BBW0 867 aa7.14□□□□□ -1.27
CUX1-208ENST00000485792 DMRTA1Q5VZB9 504 aa7.14□□□□□ -1.27
CUX1-208ENST00000485792 MTMR14Q8NCE2 650 aa7.14□□□□□ -1.27
CUX1-208ENST00000485792 MYO3BQ8WXR4 1341 aa7.14□□□□□ -1.27
CUX1-208ENST00000485792 YTHDC1Q96MU7 727 aaKnown RBP7.14□□□□□ -1.27
CUX1-208ENST00000485792 ATAD5Q96QE3 1844 aa7.14□□□□□ -1.27
CUX1-208ENST00000485792 ZIC5Q96T25 663 aa7.14□□□□□ -1.27
CUX1-208ENST00000485792 RCAN3Q9UKA8 241 aa7.14□□□□□ -1.27
CUX1-208ENST00000485792 FZD1Q9UP38 647 aa7.14□□□□□ -1.27
CUX1-208ENST00000485792 COG6Q9Y2V7 657 aa7.14□□□□□ -1.27
CUX1-208ENST00000485792 NOP58Q9Y2X3 529 aaKnown RBP7.14□□□□□ -1.27
CUX1-208ENST00000485792 BRCA2P51587 3418 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 CNTNAP1P78357 1384 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 ATRNL1Q5VV63 1379 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 PPP1R3GB7ZBB8 358 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 TK2O00142 265 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 GNAI2P04899 355 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 CHGBP05060 677 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 COL9A1P20849 921 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 IL15P40933 162 aaPredicted RBP7.13□□□□□ -1.27
CUX1-208ENST00000485792 BCAMP50895 628 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 ATP8B2P98198 1209 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 TFCP2Q12800 502 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 PDE3AQ14432 1141 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 MVPQ14764 893 aaKnown RBP7.13□□□□□ -1.27
CUX1-208ENST00000485792 EAPPQ56P03 285 aaPredicted RBP7.13□□□□□ -1.27
CUX1-208ENST00000485792 TTLL5Q6EMB2 1281 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 ADGRD1Q6QNK2 874 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 JMYQ8N9B5 988 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 MRIQ9BWK5 157 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 CNNM1Q9NRU3 951 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 ZBTB40Q9NUA8 1239 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 GGA3Q9NZ52 723 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 NAV1Q8NEY1 1877 aa7.13□□□□□ -1.27
CUX1-208ENST00000485792 PDS5AQ29RF7 1337 aaKnown RBP7.12□□□□□ -1.27
CUX1-208ENST00000485792 PITPNM2Q9BZ72 1349 aa7.12□□□□□ -1.27
CUX1-208ENST00000485792 MYH8P13535 1937 aa7.12□□□□□ -1.27
CUX1-208ENST00000485792 USP17L8P0C7I0 530 aa7.12□□□□□ -1.27
CUX1-208ENST00000485792 LMOD1P29536 600 aaPredicted RBP7.12□□□□□ -1.27
CUX1-208ENST00000485792 GTF2IP78347 998 aa7.12□□□□□ -1.27
CUX1-208ENST00000485792 RASGRF1Q13972 1273 aa7.12□□□□□ -1.27
CUX1-208ENST00000485792 KIF4BQ2VIQ3 1234 aa7.12□□□□□ -1.27
CUX1-208ENST00000485792 PRAMEF18Q5VWM3 479 aa7.12□□□□□ -1.27
CUX1-208ENST00000485792 MOB2Q70IA6 237 aa7.12□□□□□ -1.27
CUX1-208ENST00000485792 ITPRIPQ8IWB1 547 aa7.12□□□□□ -1.27
CUX1-208ENST00000485792 C16orf71Q8IYS4 520 aaPredicted RBP7.12□□□□□ -1.27
CUX1-208ENST00000485792 CNTROBQ8N137 903 aa7.12□□□□□ -1.27
CUX1-208ENST00000485792 LPIN2Q92539 896 aa7.12□□□□□ -1.27
CUX1-208ENST00000485792 GPR108Q9NPR9 543 aa7.12□□□□□ -1.27
CUX1-208ENST00000485792 NDUFB9Q9Y6M9 179 aa7.12□□□□□ -1.27
CUX1-208ENST00000485792 DOCK1Q14185 1865 aa7.11□□□□□ -1.27
CUX1-208ENST00000485792 SALL1Q9NSC2 1324 aa7.11□□□□□ -1.27
CUX1-208ENST00000485792 H7C1D1 291 aa7.11□□□□□ -1.27
CUX1-208ENST00000485792 WNT10BO00744 389 aa7.11□□□□□ -1.27
CUX1-208ENST00000485792 SRGAP3O43295 1099 aa7.11□□□□□ -1.27
CUX1-208ENST00000485792 MS4A1P11836 297 aa7.11□□□□□ -1.27
CUX1-208ENST00000485792 PRDX5P30044 214 aa7.11□□□□□ -1.27
CUX1-208ENST00000485792 HIBADHP31937 336 aaKnown RBP7.11□□□□□ -1.27
CUX1-208ENST00000485792 RRP1P56182 461 aaKnown RBP7.11□□□□□ -1.27
CUX1-208ENST00000485792 HDLBPQ00341 1268 aaKnown RBP7.11□□□□□ -1.27
CUX1-208ENST00000485792 PUM3Q15397 648 aaKnown RBP7.11□□□□□ -1.27
CUX1-208ENST00000485792 METTL24Q5JXM2 366 aa7.11□□□□□ -1.27
CUX1-208ENST00000485792 ZNF804AQ7Z570 1209 aa7.11□□□□□ -1.27
CUX1-208ENST00000485792 KIAA0825Q8IV33 1275 aa7.11□□□□□ -1.27
CUX1-208ENST00000485792 RBM27Q9P2N5 1060 aaKnown RBP7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms