RNA–Protein interactions for RNA: ENST00000483414.1

LIMK1-205, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 3,374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-205ENST00000483414 MAGEB6Q8N7X4 407 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 APPBP2Q92624 585 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 TRIM44Q96DX7 344 aaPredicted RBP11.54□□□□□ -0.56
LIMK1-205ENST00000483414 A0A0U1RQG5 324 aaPredicted RBP11.54□□□□□ -0.56
LIMK1-205ENST00000483414 GOLGA6L22H0YM25 854 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 RAD17O75943 681 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 ZFYP08048 801 aaPredicted RBP11.54□□□□□ -0.56
LIMK1-205ENST00000483414 DIXDC1Q155Q3 683 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 SLC9C2Q5TAH2 1124 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 C9orf131Q5VYM1 1079 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 HHIPL2Q6UWX4 724 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 RILPL2Q969X0 211 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 ZMYM6O95789 1325 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 TRIM6-TRIM34B2RNG4 842 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 RBM10P98175 930 aaKnown RBP11.54□□□□□ -0.56
LIMK1-205ENST00000483414 CHAF1AQ13111 956 aaPredicted RBP11.54□□□□□ -0.56
LIMK1-205ENST00000483414 GLIPR1L2Q4G1C9 344 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 GPC2Q8N158 579 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 TNPO1Q92973 898 aaKnown RBP11.54□□□□□ -0.56
LIMK1-205ENST00000483414 ZDHHC15Q96MV8 337 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 FSD1Q9BTV5 496 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 PGAP2Q9UHJ9 254 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 SERPINA10Q9UK55 444 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 DAGLAQ9Y4D2 1042 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 PHIPQ8WWQ0 1821 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 EGFRP00533 1210 aa11.53□□□□□ -0.56
LIMK1-205ENST00000483414 KCNB2Q92953 911 aa11.53□□□□□ -0.56
LIMK1-205ENST00000483414 ZBTB12Q9Y330 459 aaPredicted RBP11.53□□□□□ -0.56
LIMK1-205ENST00000483414 RPS12P25398 132 aaKnown RBP11.53□□□□□ -0.56
LIMK1-205ENST00000483414 DPF2Q92785 391 aa11.53□□□□□ -0.56
LIMK1-205ENST00000483414 STRBPQ96SI9 672 aaKnown RBP11.53□□□□□ -0.56
LIMK1-205ENST00000483414 DDX11L8A8MPP1 907 aa11.53□□□□□ -0.56
LIMK1-205ENST00000483414 LDHBP07195 334 aaKnown RBP11.53□□□□□ -0.56
LIMK1-205ENST00000483414 VPS53Q5VIR6 699 aa11.53□□□□□ -0.56
LIMK1-205ENST00000483414 CIAPIN1Q6FI81 312 aa11.53□□□□□ -0.56
LIMK1-205ENST00000483414 LCORLQ8N3X6 602 aa11.53□□□□□ -0.56
LIMK1-205ENST00000483414 EPB41L4AQ9HCS5 686 aaPredicted RBP11.53□□□□□ -0.56
LIMK1-205ENST00000483414 CASC1Q6TDU7 716 aa11.52□□□□□ -0.56
LIMK1-205ENST00000483414 CCDC129Q6ZRS4 1044 aa11.52□□□□□ -0.56
LIMK1-205ENST00000483414 IDH1O75874 414 aaKnown RBP11.52□□□□□ -0.57
LIMK1-205ENST00000483414 MMP14P50281 582 aa11.52□□□□□ -0.57
LIMK1-205ENST00000483414 MAP3K12Q12852 859 aa11.52□□□□□ -0.57
LIMK1-205ENST00000483414 SPTY2D1Q68D10 685 aaPredicted RBP11.52□□□□□ -0.57
LIMK1-205ENST00000483414 NBPF3Q9H094 633 aa11.52□□□□□ -0.57
LIMK1-205ENST00000483414 RNF181Q9P0P0 153 aa11.52□□□□□ -0.57
LIMK1-205ENST00000483414 ATRNL1Q5VV63 1379 aa11.52□□□□□ -0.57
LIMK1-205ENST00000483414 HIP1O00291 1037 aa11.51□□□□□ -0.57
LIMK1-205ENST00000483414 CD2BP2O95400 341 aaKnown RBP11.51□□□□□ -0.57
LIMK1-205ENST00000483414 PTH1RQ03431 593 aa11.51□□□□□ -0.57
LIMK1-205ENST00000483414 FOXD4L6Q3SYB3 417 aaPredicted RBP11.51□□□□□ -0.57
LIMK1-205ENST00000483414 MCMDC2Q4G0Z9 681 aa11.51□□□□□ -0.57
LIMK1-205ENST00000483414 CWC27Q6UX04 472 aaKnown RBP11.51□□□□□ -0.57
LIMK1-205ENST00000483414 FOXD4L3Q6VB84 417 aaPredicted RBP11.51□□□□□ -0.57
LIMK1-205ENST00000483414 DDX49Q9Y6V7 483 aaKnown RBP11.51□□□□□ -0.57
LIMK1-205ENST00000483414 CNTNAP1P78357 1384 aa11.51□□□□□ -0.57
LIMK1-205ENST00000483414 CCDC171Q6TFL3 1326 aa11.51□□□□□ -0.57
LIMK1-205ENST00000483414 EPB41L2O43491 1005 aaKnown RBP11.51□□□□□ -0.57
LIMK1-205ENST00000483414 JDP2Q8WYK2 163 aa11.51□□□□□ -0.57
LIMK1-205ENST00000483414 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.51□□□□□ -0.57
LIMK1-205ENST00000483414 ABCF2Q9UG63 623 aa11.51□□□□□ -0.57
LIMK1-205ENST00000483414 TACC3Q9Y6A5 838 aa11.51□□□□□ -0.57
LIMK1-205ENST00000483414 SSC5DA1L4H1 1573 aa11.51□□□□□ -0.57
LIMK1-205ENST00000483414 CRKP46108 304 aa11.51□□□□□ -0.57
LIMK1-205ENST00000483414 DYNLL1P63167 89 aaKnown RBP11.51□□□□□ -0.57
LIMK1-205ENST00000483414 GPR162Q16538 588 aa11.51□□□□□ -0.57
LIMK1-205ENST00000483414 KIF2CQ99661 725 aa11.51□□□□□ -0.57
LIMK1-205ENST00000483414 LRP2BPQ9P2M1 347 aa11.51□□□□□ -0.57
LIMK1-205ENST00000483414 TTF2Q9UNY4 1162 aaKnown RBP11.51□□□□□ -0.57
LIMK1-205ENST00000483414 ROBO3Q96MS0 1386 aa11.5□□□□□ -0.57
LIMK1-205ENST00000483414 SPDYE2BA6NHP3 402 aa11.5□□□□□ -0.57
LIMK1-205ENST00000483414 GSG1L2A8MUP6 293 aa11.5□□□□□ -0.57
LIMK1-205ENST00000483414 GPAA1O43292 621 aa11.5□□□□□ -0.57
LIMK1-205ENST00000483414 WDHD1O75717 1129 aaPredicted RBP11.5□□□□□ -0.57
LIMK1-205ENST00000483414 SPDYE6P0CI01 402 aa11.5□□□□□ -0.57
LIMK1-205ENST00000483414 GMPSP49915 693 aaPredicted RBP11.5□□□□□ -0.57
LIMK1-205ENST00000483414 ANP32BQ92688 251 aaKnown RBP11.5□□□□□ -0.57
LIMK1-205ENST00000483414 MAP4K1Q92918 833 aa11.5□□□□□ -0.57
LIMK1-205ENST00000483414 USP26Q9BXU7 913 aa11.5□□□□□ -0.57
LIMK1-205ENST00000483414 GPRC5DQ9NZD1 345 aa11.5□□□□□ -0.57
LIMK1-205ENST00000483414 K7ELQ4 463 aaPredicted RBP11.5□□□□□ -0.57
LIMK1-205ENST00000483414 TNIP1Q15025 636 aa11.5□□□□□ -0.57
LIMK1-205ENST00000483414 NAA16Q6N069 864 aaPredicted RBP11.5□□□□□ -0.57
LIMK1-205ENST00000483414 ZSCAN25Q6NSZ9 544 aa11.5□□□□□ -0.57
LIMK1-205ENST00000483414 KIAA0825Q8IV33 1275 aa11.5□□□□□ -0.57
LIMK1-205ENST00000483414 HSPD1P10809 573 aaKnown RBP11.5□□□□□ -0.57
LIMK1-205ENST00000483414 HIRAP54198 1017 aaPredicted RBP11.5□□□□□ -0.57
LIMK1-205ENST00000483414 NPM3O75607 178 aaKnown RBP11.49□□□□□ -0.57
LIMK1-205ENST00000483414 CYP7A1P22680 504 aa11.49□□□□□ -0.57
LIMK1-205ENST00000483414 NECTIN1Q15223 517 aa11.49□□□□□ -0.57
LIMK1-205ENST00000483414 MCTP1Q6DN14 999 aa11.49□□□□□ -0.57
LIMK1-205ENST00000483414 CDC42EP5Q6NZY7 148 aa11.49□□□□□ -0.57
LIMK1-205ENST00000483414 NKX2-3Q8TAU0 364 aa11.49□□□□□ -0.57
LIMK1-205ENST00000483414 SH3RF3Q8TEJ3 882 aaPredicted RBP11.49□□□□□ -0.57
LIMK1-205ENST00000483414 RAI14Q9P0K7 980 aa11.49□□□□□ -0.57
LIMK1-205ENST00000483414 PRKAB2O43741 272 aa11.49□□□□□ -0.57
LIMK1-205ENST00000483414 EVX2Q03828 476 aa11.49□□□□□ -0.57
LIMK1-205ENST00000483414 COL9A3Q14050 684 aaPredicted RBP11.49□□□□□ -0.57
LIMK1-205ENST00000483414 PRMT6Q96LA8 375 aaPredicted RBP11.49□□□□□ -0.57
LIMK1-205ENST00000483414 DSCC1Q9BVC3 393 aa11.49□□□□□ -0.57
LIMK1-205ENST00000483414 DDX4Q9NQI0 724 aaKnown RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms