RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 C12orf50Q8NA57 414 aaPredicted RBP10.24□□□□□ -0.77
USP40-213ENST00000483216 ZC3H12CQ9C0D7 883 aaKnown RBP10.24□□□□□ -0.77
USP40-213ENST00000483216 CBX8Q9HC52 389 aa10.24□□□□□ -0.77
USP40-213ENST00000483216 RAD18Q9NS91 495 aa10.24□□□□□ -0.77
USP40-213ENST00000483216 CACNA2D2Q9NY47 1150 aa10.24□□□□□ -0.77
USP40-213ENST00000483216 ZNF862O60290 1169 aa10.23□□□□□ -0.77
USP40-213ENST00000483216 AOC2O75106 756 aa10.23□□□□□ -0.77
USP40-213ENST00000483216 PREPP48147 710 aa10.23□□□□□ -0.77
USP40-213ENST00000483216 SOX4Q06945 474 aaPredicted RBP10.23□□□□□ -0.77
USP40-213ENST00000483216 NKAPLQ5M9Q1 402 aa10.23□□□□□ -0.77
USP40-213ENST00000483216 ARMC10Q8N2F6 343 aa10.23□□□□□ -0.77
USP40-213ENST00000483216 KCNB2Q92953 911 aa10.23□□□□□ -0.77
USP40-213ENST00000483216 WDR18Q9BV38 432 aa10.23□□□□□ -0.77
USP40-213ENST00000483216 H2AFB1P0C5Y9 115 aa10.22□□□□□ -0.77
USP40-213ENST00000483216 H2AFB2P0C5Z0 115 aa10.22□□□□□ -0.77
USP40-213ENST00000483216 RLBP1P12271 317 aa10.22□□□□□ -0.77
USP40-213ENST00000483216 LIG1P18858 919 aa10.22□□□□□ -0.77
USP40-213ENST00000483216 RSPO4Q2I0M5 234 aaPredicted RBP10.22□□□□□ -0.77
USP40-213ENST00000483216 KIF4BQ2VIQ3 1234 aa10.22□□□□□ -0.77
USP40-213ENST00000483216 TTBK2Q6IQ55 1244 aa10.22□□□□□ -0.77
USP40-213ENST00000483216 LLGL2Q6P1M3 1020 aa10.22□□□□□ -0.77
USP40-213ENST00000483216 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.22□□□□□ -0.77
USP40-213ENST00000483216 GRIN3AQ8TCU5 1115 aa10.22□□□□□ -0.77
USP40-213ENST00000483216 MYRFLQ96LU7 910 aa10.22□□□□□ -0.77
USP40-213ENST00000483216 TRIM37O94972 964 aa10.21□□□□□ -0.77
USP40-213ENST00000483216 SLFN14P0C7P3 912 aa10.21□□□□□ -0.77
USP40-213ENST00000483216 ADH5P11766 374 aa10.21□□□□□ -0.77
USP40-213ENST00000483216 DRD2P14416 443 aa10.21□□□□□ -0.77
USP40-213ENST00000483216 RPS26P62854 115 aaKnown RBP10.21□□□□□ -0.77
USP40-213ENST00000483216 RASIP1Q5U651 963 aa10.21□□□□□ -0.77
USP40-213ENST00000483216 MAP1SQ66K74 1059 aaPredicted RBP10.21□□□□□ -0.77
USP40-213ENST00000483216 UTP4Q969X6 686 aaKnown RBP10.21□□□□□ -0.77
USP40-213ENST00000483216 WDR89Q96FK6 387 aaPredicted RBP10.21□□□□□ -0.77
USP40-213ENST00000483216 HIF3AQ9Y2N7 669 aa10.21□□□□□ -0.77
USP40-213ENST00000483216 DHX15O43143 795 aaKnown RBP10.2□□□□□ -0.78
USP40-213ENST00000483216 VAMP1P23763 118 aa10.2□□□□□ -0.78
USP40-213ENST00000483216 AKAP4Q5JQC9 854 aa10.2□□□□□ -0.78
USP40-213ENST00000483216 C2CD4AQ8NCU7 369 aaPredicted RBP10.2□□□□□ -0.78
USP40-213ENST00000483216 GAS2O43903 313 aaKnown RBP10.19□□□□□ -0.78
USP40-213ENST00000483216 LIG3P49916 1009 aa10.19□□□□□ -0.78
USP40-213ENST00000483216 PRR23CQ6ZRP0 262 aa10.19□□□□□ -0.78
USP40-213ENST00000483216 GPBAR1Q8TDU6 330 aa10.19□□□□□ -0.78
USP40-213ENST00000483216 GSX1Q9H4S2 264 aaPredicted RBP10.19□□□□□ -0.78
USP40-213ENST00000483216 PCDHGC5Q9Y5F6 944 aa10.19□□□□□ -0.78
USP40-213ENST00000483216 FURINP09958 794 aa10.18□□□□□ -0.78
USP40-213ENST00000483216 LDLRAD1Q5T700 205 aa10.18□□□□□ -0.78
USP40-213ENST00000483216 AGMOQ6ZNB7 445 aa10.18□□□□□ -0.78
USP40-213ENST00000483216 FAM20CQ8IXL6 584 aa10.18□□□□□ -0.78
USP40-213ENST00000483216 PPP1R9AQ9ULJ8 1098 aa10.18□□□□□ -0.78
USP40-213ENST00000483216 TMPRSS2O15393 492 aa10.17□□□□□ -0.78
USP40-213ENST00000483216 BMP3P12645 472 aa10.17□□□□□ -0.78
USP40-213ENST00000483216 MPRIPQ6WCQ1 1025 aa10.17□□□□□ -0.78
USP40-213ENST00000483216 CRIM1Q9NZV1 1036 aa10.17□□□□□ -0.78
USP40-213ENST00000483216 ID3Q02535 119 aa10.16□□□□□ -0.78
USP40-213ENST00000483216 MAP3K11Q16584 847 aa10.16□□□□□ -0.78
USP40-213ENST00000483216 ACSBG1Q96GR2 724 aa10.16□□□□□ -0.78
USP40-213ENST00000483216 RSRP1Q9BUV0 290 aa10.16□□□□□ -0.78
USP40-213ENST00000483216 BACH2Q9BYV9 841 aa10.16□□□□□ -0.78
USP40-213ENST00000483216 AP4E1Q9UPM8 1137 aa10.16□□□□□ -0.78
USP40-213ENST00000483216 RAXQ9Y2V3 346 aa10.16□□□□□ -0.78
USP40-213ENST00000483216 ACTL7BQ9Y614 415 aa10.16□□□□□ -0.78
USP40-213ENST00000483216 DYRK3O43781 588 aa10.15□□□□□ -0.78
USP40-213ENST00000483216 USP11P51784 963 aa10.15□□□□□ -0.78
USP40-213ENST00000483216 ZC3H12AQ5D1E8 599 aaKnown RBP10.15□□□□□ -0.78
USP40-213ENST00000483216 DYMQ7RTS9 669 aa10.15□□□□□ -0.78
USP40-213ENST00000483216 CLEC10AQ8IUN9 316 aa10.15□□□□□ -0.78
USP40-213ENST00000483216 TMEM87AQ8NBN3 555 aa10.15□□□□□ -0.78
USP40-213ENST00000483216 MRRFQ96E11 262 aaKnown RBP10.15□□□□□ -0.78
USP40-213ENST00000483216 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.14□□□□□ -0.79
USP40-213ENST00000483216 PWP1Q13610 501 aa10.14□□□□□ -0.79
USP40-213ENST00000483216 SGO2Q562F6 1265 aa10.14□□□□□ -0.79
USP40-213ENST00000483216 PHC3Q8NDX5 983 aa10.14□□□□□ -0.79
USP40-213ENST00000483216 GAL3ST3Q96A11 431 aa10.14□□□□□ -0.79
USP40-213ENST00000483216 ATXN3LQ9H3M9 355 aa10.14□□□□□ -0.79
USP40-213ENST00000483216 STOML1Q9UBI4 398 aa10.14□□□□□ -0.79
USP40-213ENST00000483216 UNCXA6NJT0 531 aa10.13□□□□□ -0.79
USP40-213ENST00000483216 TFE3P19532 575 aaPredicted RBP10.13□□□□□ -0.79
USP40-213ENST00000483216 LMNB1P20700 586 aa10.13□□□□□ -0.79
USP40-213ENST00000483216 MAP4P27816 1152 aaKnown RBP10.13□□□□□ -0.79
USP40-213ENST00000483216 ASPAP45381 313 aa10.13□□□□□ -0.79
USP40-213ENST00000483216 CDPF1Q6NVV7 123 aa10.13□□□□□ -0.79
USP40-213ENST00000483216 ERMP1Q7Z2K6 904 aa10.13□□□□□ -0.79
USP40-213ENST00000483216 EZH1Q92800 747 aaPredicted RBP10.13□□□□□ -0.79
USP40-213ENST00000483216 FANCD2OSQ96PS1 177 aa10.13□□□□□ -0.79
USP40-213ENST00000483216 FAM83CQ9BQN1 747 aa10.13□□□□□ -0.79
USP40-213ENST00000483216 YIPF2Q9BWQ6 316 aa10.13□□□□□ -0.79
USP40-213ENST00000483216 FAM105AQ9NUU6 356 aa10.13□□□□□ -0.79
USP40-213ENST00000483216 PCDHA4Q9UN74 947 aa10.13□□□□□ -0.79
USP40-213ENST00000483216 RECKO95980 971 aa10.12□□□□□ -0.79
USP40-213ENST00000483216 ERVK-24P63145 666 aa10.12□□□□□ -0.79
USP40-213ENST00000483216 TSNAXIP1Q2TAA8 658 aa10.12□□□□□ -0.79
USP40-213ENST00000483216 BEND4Q6ZU67 534 aa10.12□□□□□ -0.79
USP40-213ENST00000483216 RELL1Q8IUW5 271 aa10.12□□□□□ -0.79
USP40-213ENST00000483216 TMEM74Q96NL1 305 aa10.12□□□□□ -0.79
USP40-213ENST00000483216 KCNF1Q9H3M0 494 aa10.12□□□□□ -0.79
USP40-213ENST00000483216 SEMA6BQ9H3T3 888 aa10.12□□□□□ -0.79
USP40-213ENST00000483216 DISC1Q9NRI5 854 aa10.12□□□□□ -0.79
USP40-213ENST00000483216 KIAA1522Q9P206 1035 aaPredicted RBP10.12□□□□□ -0.79
USP40-213ENST00000483216 TLR6Q9Y2C9 796 aa10.12□□□□□ -0.79
USP40-213ENST00000483216 PCDHB5Q9Y5E4 795 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms