RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 FZD9O00144 591 aa9.88□□□□□ -0.83
USP4-210ENST00000483212 PITPNM1O00562 1244 aa9.88□□□□□ -0.83
USP4-210ENST00000483212 PRKAB2O43741 272 aa9.88□□□□□ -0.83
USP4-210ENST00000483212 VIL1P09327 827 aaKnown RBP9.88□□□□□ -0.83
USP4-210ENST00000483212 PPP4CP60510 307 aa9.88□□□□□ -0.83
USP4-210ENST00000483212 GSTO1P78417 241 aa9.88□□□□□ -0.83
USP4-210ENST00000483212 RSBN1LQ6PCB5 846 aaPredicted RBP9.88□□□□□ -0.83
USP4-210ENST00000483212 NIM1KQ8IY84 436 aa9.88□□□□□ -0.83
USP4-210ENST00000483212 RASEFQ8IZ41 740 aa9.88□□□□□ -0.83
USP4-210ENST00000483212 FBXW7Q969H0 707 aa9.88□□□□□ -0.83
USP4-210ENST00000483212 AIDAQ96BJ3 306 aa9.88□□□□□ -0.83
USP4-210ENST00000483212 SNX14Q9Y5W7 946 aa9.88□□□□□ -0.83
USP4-210ENST00000483212 TAF6LQ9Y6J9 622 aa9.88□□□□□ -0.83
USP4-210ENST00000483212 RPAP1Q9BWH6 1393 aaPredicted RBP9.88□□□□□ -0.83
USP4-210ENST00000483212 PATL2C9JE40 543 aaKnown RBP9.87□□□□□ -0.83
USP4-210ENST00000483212 PSMD14O00487 310 aa9.87□□□□□ -0.83
USP4-210ENST00000483212 SLC27A2O14975 620 aa9.87□□□□□ -0.83
USP4-210ENST00000483212 RAD17O75943 681 aa9.87□□□□□ -0.83
USP4-210ENST00000483212 CYP21A2P08686 494 aa9.87□□□□□ -0.83
USP4-210ENST00000483212 RHBDL3P58872 404 aa9.87□□□□□ -0.83
USP4-210ENST00000483212 ANAPC15P60006 121 aa9.87□□□□□ -0.83
USP4-210ENST00000483212 CXCL9Q07325 125 aa9.87□□□□□ -0.83
USP4-210ENST00000483212 ALX1Q15699 326 aa9.87□□□□□ -0.83
USP4-210ENST00000483212 TSGA10IPQ3SY00 556 aa9.87□□□□□ -0.83
USP4-210ENST00000483212 CREB3L3Q68CJ9 461 aa9.87□□□□□ -0.83
USP4-210ENST00000483212 MRIQ9BWK5 157 aa9.87□□□□□ -0.83
USP4-210ENST00000483212 AATFQ9NY61 560 aaKnown RBP eCLIP9.87□□□□□ -0.83
USP4-210ENST00000483212 TTF2Q9UNY4 1162 aaKnown RBP9.87□□□□□ -0.83
USP4-210ENST00000483212 DAGLAQ9Y4D2 1042 aa9.87□□□□□ -0.83
USP4-210ENST00000483212 DDX60LQ5H9U9 1706 aaKnown RBP9.87□□□□□ -0.83
USP4-210ENST00000483212 TIAM2Q8IVF5 1701 aa9.87□□□□□ -0.83
USP4-210ENST00000483212 LAMA4Q16363 1823 aa9.86□□□□□ -0.83
USP4-210ENST00000483212 MYO3BQ8WXR4 1341 aa9.86□□□□□ -0.83
USP4-210ENST00000483212 MYH2Q9UKX2 1941 aa9.86□□□□□ -0.83
USP4-210ENST00000483212 SBF1O95248 1867 aa9.86□□□□□ -0.83
USP4-210ENST00000483212 FGAP02671 866 aa9.86□□□□□ -0.83
USP4-210ENST00000483212 LDHCP07864 332 aa9.86□□□□□ -0.83
USP4-210ENST00000483212 GNAT2P19087 354 aa9.86□□□□□ -0.83
USP4-210ENST00000483212 BTDP43251 543 aa9.86□□□□□ -0.83
USP4-210ENST00000483212 HDLBPQ00341 1268 aaKnown RBP9.86□□□□□ -0.83
USP4-210ENST00000483212 HHIPL2Q6UWX4 724 aa9.86□□□□□ -0.83
USP4-210ENST00000483212 ARHGAP27Q6ZUM4 889 aa9.86□□□□□ -0.83
USP4-210ENST00000483212 KIAA0825Q8IV33 1275 aa9.86□□□□□ -0.83
USP4-210ENST00000483212 IFNL3Q8IZI9 196 aa9.86□□□□□ -0.83
USP4-210ENST00000483212 NBPF3Q9H094 633 aa9.86□□□□□ -0.83
USP4-210ENST00000483212 MKRN1Q9UHC7 482 aaKnown RBP9.86□□□□□ -0.83
USP4-210ENST00000483212 DICER1Q9UPY3 1922 aaKnown RBP9.86□□□□□ -0.83
USP4-210ENST00000483212 ZNF541Q9H0D2 1346 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 F8W031 263 aaPredicted RBP9.85□□□□□ -0.83
USP4-210ENST00000483212 LMNB1P20700 586 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 MCCP23508 829 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 CRKP46108 304 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 SCNN1DP51172 638 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 COL9A3Q14050 684 aaPredicted RBP9.85□□□□□ -0.83
USP4-210ENST00000483212 ADCK5Q3MIX3 580 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 CIAPIN1Q6FI81 312 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 APOBEC3HQ6NTF7 200 aaKnown RBP9.85□□□□□ -0.83
USP4-210ENST00000483212 STOX1Q6ZVD7 989 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 SLF2Q8IX21 1173 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 AGBL3Q8NEM8 1001 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 SH3RF3Q8TEJ3 882 aaPredicted RBP9.85□□□□□ -0.83
USP4-210ENST00000483212 SDR42E1Q8WUS8 393 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 JDP2Q8WYK2 163 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 OTUD5Q96G74 571 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 ZDHHC15Q96MV8 337 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 SERPINA10Q9UK55 444 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 ZBTB12Q9Y330 459 aaPredicted RBP9.85□□□□□ -0.83
USP4-210ENST00000483212 PCDHAC2Q9Y5I4 1007 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 SLC4A4Q9Y6R1 1079 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 UTRNP46939 3433 aa9.85□□□□□ -0.83
USP4-210ENST00000483212 BAG3O95817 575 aa9.84□□□□□ -0.83
USP4-210ENST00000483212 GIMAP6Q6P9H5 292 aa9.84□□□□□ -0.83
USP4-210ENST00000483212 CERS3Q8IU89 383 aa9.84□□□□□ -0.83
USP4-210ENST00000483212 TEKT1Q969V4 418 aa9.84□□□□□ -0.83
USP4-210ENST00000483212 CRNKL1Q9BZJ0 848 aaKnown RBP9.84□□□□□ -0.83
USP4-210ENST00000483212 DCP1AQ9NPI6 582 aaPredicted RBP9.84□□□□□ -0.83
USP4-210ENST00000483212 CTNNA3Q9UI47 895 aa9.84□□□□□ -0.83
USP4-210ENST00000483212 TACC3Q9Y6A5 838 aa9.84□□□□□ -0.83
USP4-210ENST00000483212 CDK5RAP2Q96SN8 1893 aa9.84□□□□□ -0.83
USP4-210ENST00000483212 FOCADQ5VW36 1801 aa9.84□□□□□ -0.83
USP4-210ENST00000483212 WDHD1O75717 1129 aaPredicted RBP9.83□□□□□ -0.84
USP4-210ENST00000483212 TNIP1Q15025 636 aa9.83□□□□□ -0.84
USP4-210ENST00000483212 RABEP1Q15276 862 aa9.83□□□□□ -0.84
USP4-210ENST00000483212 RNF20Q5VTR2 975 aa9.83□□□□□ -0.84
USP4-210ENST00000483212 CDC42EP5Q6NZY7 148 aa9.83□□□□□ -0.84
USP4-210ENST00000483212 TBC1D10CQ8IV04 446 aa9.83□□□□□ -0.84
USP4-210ENST00000483212 MTMR14Q8NCE2 650 aa9.83□□□□□ -0.84
USP4-210ENST00000483212 ZBED3Q96IU2 234 aaPredicted RBP9.83□□□□□ -0.84
USP4-210ENST00000483212 TM6SF1Q9BZW5 370 aa9.83□□□□□ -0.84
USP4-210ENST00000483212 ATP8A2Q9NTI2 1148 aa9.83□□□□□ -0.84
USP4-210ENST00000483212 LAMB1P07942 1786 aa9.83□□□□□ -0.84
USP4-210ENST00000483212 NAV1Q8NEY1 1877 aa9.83□□□□□ -0.84
USP4-210ENST00000483212 SHTN1A0MZ66 631 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 SMIM22K7EJ46 135 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 CD2BP2O95400 341 aaKnown RBP9.82□□□□□ -0.84
USP4-210ENST00000483212 APPP05067 770 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 PLCG2P16885 1265 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 ZKSCAN1P17029 563 aaPredicted RBP9.82□□□□□ -0.84
USP4-210ENST00000483212 RPS12P25398 132 aaKnown RBP9.82□□□□□ -0.84
USP4-210ENST00000483212 EIF6P56537 245 aaKnown RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms