RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 CSF1RP07333 972 aa9.79□□□□□ -0.84
USP54-213ENST00000481991 TCP10Q12799 353 aa9.79□□□□□ -0.84
USP54-213ENST00000481991 GCKRQ14397 625 aa9.79□□□□□ -0.84
USP54-213ENST00000481991 TDHQ8IZJ6 230 aa9.79□□□□□ -0.84
USP54-213ENST00000481991 PARK7Q99497 189 aaKnown RBP9.79□□□□□ -0.84
USP54-213ENST00000481991 MYH16Q9H6N6 1097 aa9.79□□□□□ -0.84
USP54-213ENST00000481991 CALD1Q05682 793 aaKnown RBP9.78□□□□□ -0.84
USP54-213ENST00000481991 LRIT3Q3SXY7 679 aa9.78□□□□□ -0.84
USP54-213ENST00000481991 C15orf52Q6ZUT6 534 aaKnown RBP9.78□□□□□ -0.84
USP54-213ENST00000481991 TEKT1Q969V4 418 aa9.78□□□□□ -0.84
USP54-213ENST00000481991 COA7Q96BR5 231 aa9.78□□□□□ -0.84
USP54-213ENST00000481991 NBPF3Q9H094 633 aa9.78□□□□□ -0.84
USP54-213ENST00000481991 PRDM6Q9NQX0 595 aa9.78□□□□□ -0.84
USP54-213ENST00000481991 COL6A3P12111 3177 aa9.77□□□□□ -0.84
USP54-213ENST00000481991 MDM2Q00987 491 aaPredicted RBP9.77□□□□□ -0.85
USP54-213ENST00000481991 GRIK5Q16478 980 aa9.77□□□□□ -0.85
USP54-213ENST00000481991 LMBR1LQ6UX01 489 aa9.77□□□□□ -0.85
USP54-213ENST00000481991 G2E3Q7L622 706 aa9.77□□□□□ -0.85
USP54-213ENST00000481991 TSPYL6Q8N831 410 aa9.77□□□□□ -0.85
USP54-213ENST00000481991 TDRD7Q8NHU6 1098 aaKnown RBP9.77□□□□□ -0.85
USP54-213ENST00000481991 SMCR8Q8TEV9 937 aaPredicted RBP9.77□□□□□ -0.85
USP54-213ENST00000481991 C11orf49Q9H6J7 331 aa9.77□□□□□ -0.85
USP54-213ENST00000481991 IFT57Q9NWB7 429 aa9.77□□□□□ -0.85
USP54-213ENST00000481991 ADAMTS8Q9UP79 889 aa9.77□□□□□ -0.85
USP54-213ENST00000481991 FAM205AQ6ZU69 1335 aa9.77□□□□□ -0.85
USP54-213ENST00000481991 RPTORQ8N122 1335 aa9.77□□□□□ -0.85
USP54-213ENST00000481991 CAPN2P17655 700 aa9.76□□□□□ -0.85
USP54-213ENST00000481991 FKBP5Q13451 457 aaPredicted RBP9.76□□□□□ -0.85
USP54-213ENST00000481991 CAVIN4Q5BKX8 364 aa9.76□□□□□ -0.85
USP54-213ENST00000481991 PXYLP1Q8TE99 480 aa9.76□□□□□ -0.85
USP54-213ENST00000481991 FAM84BQ96KN1 310 aaPredicted RBP9.76□□□□□ -0.85
USP54-213ENST00000481991 PLA2G12BQ9BX93 195 aa9.76□□□□□ -0.85
USP54-213ENST00000481991 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.76□□□□□ -0.85
USP54-213ENST00000481991 HMX1Q9NP08 348 aaPredicted RBP9.76□□□□□ -0.85
USP54-213ENST00000481991 PICK1Q9NRD5 415 aa9.76□□□□□ -0.85
USP54-213ENST00000481991 ZHX2Q9Y6X8 837 aa9.76□□□□□ -0.85
USP54-213ENST00000481991 APAF1O14727 1248 aa9.75□□□□□ -0.85
USP54-213ENST00000481991 ZNF853P0CG23 659 aa9.75□□□□□ -0.85
USP54-213ENST00000481991 BCRP11274 1271 aa9.75□□□□□ -0.85
USP54-213ENST00000481991 ZEB1P37275 1124 aaPredicted RBP9.75□□□□□ -0.85
USP54-213ENST00000481991 GPAT2Q6NUI2 795 aa9.75□□□□□ -0.85
USP54-213ENST00000481991 FASTKD5Q7L8L6 764 aaKnown RBP9.75□□□□□ -0.85
USP54-213ENST00000481991 FAM83AQ86UY5 434 aa9.75□□□□□ -0.85
USP54-213ENST00000481991 ANKRD13CQ8N6S4 541 aa9.75□□□□□ -0.85
USP54-213ENST00000481991 LBHD1Q9BQE6 289 aaPredicted RBP9.75□□□□□ -0.85
USP54-213ENST00000481991 CXCL11O14625 94 aa9.74□□□□□ -0.85
USP54-213ENST00000481991 COL9A1P20849 921 aa9.74□□□□□ -0.85
USP54-213ENST00000481991 FOXO4P98177 505 aa9.74□□□□□ -0.85
USP54-213ENST00000481991 UBE4AQ14139 1066 aa9.74□□□□□ -0.85
USP54-213ENST00000481991 RALBP1Q15311 655 aa9.74□□□□□ -0.85
USP54-213ENST00000481991 ZNF697Q5TEC3 545 aa9.74□□□□□ -0.85
USP54-213ENST00000481991 ZSCAN29Q8IWY8 852 aaPredicted RBP9.74□□□□□ -0.85
USP54-213ENST00000481991 TBC1D22AQ8WUA7 517 aa9.74□□□□□ -0.85
USP54-213ENST00000481991 DNAAF4Q8WXU2 420 aa9.74□□□□□ -0.85
USP54-213ENST00000481991 CRISPLD2Q9H0B8 497 aa9.74□□□□□ -0.85
USP54-213ENST00000481991 PAK6Q9NQU5 681 aaPredicted RBP9.74□□□□□ -0.85
USP54-213ENST00000481991 KCNH4Q9UQ05 1017 aa9.74□□□□□ -0.85
USP54-213ENST00000481991 ZNF646O15015 1829 aaPredicted RBP9.74□□□□□ -0.85
USP54-213ENST00000481991 RANBP2P49792 3224 aaKnown RBP9.73□□□□□ -0.85
USP54-213ENST00000481991 CUL9Q8IWT3 2517 aa9.73□□□□□ -0.85
USP54-213ENST00000481991 CASP7P55210 303 aa9.73□□□□□ -0.85
USP54-213ENST00000481991 HDLBPQ00341 1268 aaKnown RBP9.73□□□□□ -0.85
USP54-213ENST00000481991 TRIM32Q13049 653 aa9.73□□□□□ -0.85
USP54-213ENST00000481991 IRF5Q13568 498 aa9.73□□□□□ -0.85
USP54-213ENST00000481991 MOGSQ13724 837 aa9.73□□□□□ -0.85
USP54-213ENST00000481991 ANKLE1Q8NAG6 615 aa9.73□□□□□ -0.85
USP54-213ENST00000481991 LINS1Q8NG48 757 aa9.73□□□□□ -0.85
USP54-213ENST00000481991 FAM151AQ8WW52 585 aa9.73□□□□□ -0.85
USP54-213ENST00000481991 TSR2Q969E8 191 aaKnown RBP9.73□□□□□ -0.85
USP54-213ENST00000481991 ZDHHC15Q96MV8 337 aa9.73□□□□□ -0.85
USP54-213ENST00000481991 GUCD1Q96NT3 240 aa9.73□□□□□ -0.85
USP54-213ENST00000481991 PUS3Q9BZE2 481 aaKnown RBP9.73□□□□□ -0.85
USP54-213ENST00000481991 LRRFIP2Q9Y608 721 aaKnown RBP9.73□□□□□ -0.85
USP54-213ENST00000481991 OTOFQ9HC10 1997 aa9.73□□□□□ -0.85
USP54-213ENST00000481991 ADGRA2Q96PE1 1338 aa9.73□□□□□ -0.85
USP54-213ENST00000481991 ECM29Q5VYK3 1845 aa9.72□□□□□ -0.85
USP54-213ENST00000481991 TRIM75PA6NK02 468 aa9.72□□□□□ -0.85
USP54-213ENST00000481991 TWISTNBQ3B726 338 aaPredicted RBP9.72□□□□□ -0.85
USP54-213ENST00000481991 APOBEC3HQ6NTF7 200 aaKnown RBP9.72□□□□□ -0.85
USP54-213ENST00000481991 MAFAQ8NHW3 353 aaPredicted RBP9.72□□□□□ -0.85
USP54-213ENST00000481991 USP40Q9NVE5 1235 aa9.72□□□□□ -0.85
USP54-213ENST00000481991 C9orf78Q9NZ63 289 aaPredicted RBP9.72□□□□□ -0.85
USP54-213ENST00000481991 POTEB2H3BUK9 544 aa9.71□□□□□ -0.86
USP54-213ENST00000481991 HMGCRP04035 888 aa9.71□□□□□ -0.86
USP54-213ENST00000481991 CYP2B6P20813 491 aa9.71□□□□□ -0.86
USP54-213ENST00000481991 FLIIQ13045 1269 aa9.71□□□□□ -0.86
USP54-213ENST00000481991 METTL24Q5JXM2 366 aa9.71□□□□□ -0.86
USP54-213ENST00000481991 EPHA10Q5JZY3 1008 aa9.71□□□□□ -0.86
USP54-213ENST00000481991 FKBP1CQ5VVH2 108 aa9.71□□□□□ -0.86
USP54-213ENST00000481991 PPP4R3CPQ6ZMV5 832 aa9.71□□□□□ -0.86
USP54-213ENST00000481991 SYMPKQ92797 1274 aaKnown RBP9.71□□□□□ -0.86
USP54-213ENST00000481991 CDX2Q99626 313 aaPredicted RBP9.71□□□□□ -0.86
USP54-213ENST00000481991 SPINK5Q9NQ38 1064 aaPredicted RBP9.71□□□□□ -0.86
USP54-213ENST00000481991 PRKAG2Q9UGJ0 569 aa9.71□□□□□ -0.86
USP54-213ENST00000481991 RAPGEFL1Q9UHV5 662 aa9.71□□□□□ -0.86
USP54-213ENST00000481991 ZNF112Q9UJU3 913 aa9.71□□□□□ -0.86
USP54-213ENST00000481991 MYH3P11055 1940 aa9.7□□□□□ -0.86
USP54-213ENST00000481991 AK9Q5TCS8 1911 aa9.7□□□□□ -0.86
USP54-213ENST00000481991 A0A0G2JLL6 359 aaPredicted RBP9.7□□□□□ -0.86
USP54-213ENST00000481991 F6X3S4 739 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms