RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 PDS5AQ29RF7 1337 aaKnown RBP14.28□□□□□ -0.12
PTPRF-212ENST00000477970 FBXO18Q8NFZ0 1043 aa14.28□□□□□ -0.12
PTPRF-212ENST00000477970 SEC31BQ9NQW1 1179 aa14.28□□□□□ -0.12
PTPRF-212ENST00000477970 STK36Q9NRP7 1315 aa14.27□□□□□ -0.12
PTPRF-212ENST00000477970 A0A1W2PQ27 194 aa14.27□□□□□ -0.12
PTPRF-212ENST00000477970 A0A1W2PQ64 194 aa14.27□□□□□ -0.12
PTPRF-212ENST00000477970 A0A1W2PQD8 194 aa14.27□□□□□ -0.12
PTPRF-212ENST00000477970 TPM3P06753 285 aa14.27□□□□□ -0.12
PTPRF-212ENST00000477970 RCAN1P53805 252 aa14.27□□□□□ -0.12
PTPRF-212ENST00000477970 R3HDM1Q15032 1099 aaKnown RBP14.27□□□□□ -0.12
PTPRF-212ENST00000477970 TMED8Q6PL24 325 aaPredicted RBP14.27□□□□□ -0.12
PTPRF-212ENST00000477970 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.27□□□□□ -0.12
PTPRF-212ENST00000477970 CACNA1SQ13698 1873 aa14.27□□□□□ -0.12
PTPRF-212ENST00000477970 DLEC1Q9Y238 1755 aa14.27□□□□□ -0.12
PTPRF-212ENST00000477970 YEATS4O95619 227 aa14.27□□□□□ -0.13
PTPRF-212ENST00000477970 IFNL3Q8IZI9 196 aa14.27□□□□□ -0.13
PTPRF-212ENST00000477970 POLR3EQ9NVU0 708 aa14.27□□□□□ -0.13
PTPRF-212ENST00000477970 NR1I2O75469 434 aa14.26□□□□□ -0.13
PTPRF-212ENST00000477970 ADCY5O95622 1261 aa14.26□□□□□ -0.13
PTPRF-212ENST00000477970 CHRNDQ07001 517 aa14.26□□□□□ -0.13
PTPRF-212ENST00000477970 UBE4AQ14139 1066 aa14.26□□□□□ -0.13
PTPRF-212ENST00000477970 BICD2Q8TD16 824 aa14.26□□□□□ -0.13
PTPRF-212ENST00000477970 CYB5R4Q7L1T6 521 aa14.26□□□□□ -0.13
PTPRF-212ENST00000477970 ENGASEQ8NFI3 743 aa14.26□□□□□ -0.13
PTPRF-212ENST00000477970 IGDCC4Q8TDY8 1250 aa14.26□□□□□ -0.13
PTPRF-212ENST00000477970 STAG1Q8WVM7 1258 aa14.26□□□□□ -0.13
PTPRF-212ENST00000477970 C8orf76Q96K31 380 aa14.26□□□□□ -0.13
PTPRF-212ENST00000477970 USP28Q96RU2 1077 aa14.26□□□□□ -0.13
PTPRF-212ENST00000477970 EPB41L4AQ9HCS5 686 aaPredicted RBP14.26□□□□□ -0.13
PTPRF-212ENST00000477970 BSDC1Q9NW68 430 aaPredicted RBP14.26□□□□□ -0.13
PTPRF-212ENST00000477970 LINC00116Q8NCU8 138 aa14.26□□□□□ -0.13
PTPRF-212ENST00000477970 KRT23Q9C075 422 aa14.26□□□□□ -0.13
PTPRF-212ENST00000477970 GPHNQ9NQX3 736 aaPredicted RBP14.26□□□□□ -0.13
PTPRF-212ENST00000477970 IGSF3O75054 1194 aa14.25□□□□□ -0.13
PTPRF-212ENST00000477970 ZNF827Q17R98 1081 aa14.25□□□□□ -0.13
PTPRF-212ENST00000477970 MAGEB6Q8N7X4 407 aa14.25□□□□□ -0.13
PTPRF-212ENST00000477970 GSG1L2A8MUP6 293 aa14.25□□□□□ -0.13
PTPRF-212ENST00000477970 HELBQ8NG08 1087 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-212ENST00000477970 ORC3Q9UBD5 711 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-212ENST00000477970 MYH13Q9UKX3 1938 aa14.25□□□□□ -0.13
PTPRF-212ENST00000477970 SEMA3EO15041 775 aa14.25□□□□□ -0.13
PTPRF-212ENST00000477970 FAM160A1Q05DH4 1040 aa14.25□□□□□ -0.13
PTPRF-212ENST00000477970 ADALQ6DHV7 355 aa14.25□□□□□ -0.13
PTPRF-212ENST00000477970 APOA5Q6Q788 366 aa14.25□□□□□ -0.13
PTPRF-212ENST00000477970 TDRD7Q8NHU6 1098 aaKnown RBP14.25□□□□□ -0.13
PTPRF-212ENST00000477970 KCNG4Q8TDN1 519 aa14.25□□□□□ -0.13
PTPRF-212ENST00000477970 LY9Q9HBG7 655 aa14.25□□□□□ -0.13
PTPRF-212ENST00000477970 ANAPC4Q9UJX5 808 aa14.25□□□□□ -0.13
PTPRF-212ENST00000477970 NEDD4P46934 1319 aa14.24□□□□□ -0.13
PTPRF-212ENST00000477970 MBD4O95243 580 aa14.24□□□□□ -0.13
PTPRF-212ENST00000477970 SNW1Q13573 536 aaKnown RBP14.24□□□□□ -0.13
PTPRF-212ENST00000477970 NACAP1Q9BZK3 213 aa14.24□□□□□ -0.13
PTPRF-212ENST00000477970 CPLX1O14810 134 aa14.24□□□□□ -0.13
PTPRF-212ENST00000477970 METAP2P50579 478 aaKnown RBP eCLIP14.24□□□□□ -0.13
PTPRF-212ENST00000477970 AKNAD1Q5T1N1 836 aa14.24□□□□□ -0.13
PTPRF-212ENST00000477970 CPLX2Q6PUV4 134 aaKnown RBP14.24□□□□□ -0.13
PTPRF-212ENST00000477970 FLAD1Q8NFF5 587 aa14.24□□□□□ -0.13
PTPRF-212ENST00000477970 SLC16A10Q8TF71 515 aa14.24□□□□□ -0.13
PTPRF-212ENST00000477970 NYXQ9GZU5 481 aa14.24□□□□□ -0.13
PTPRF-212ENST00000477970 NAPBQ9H115 298 aa14.24□□□□□ -0.13
PTPRF-212ENST00000477970 LAMB1P07942 1786 aa14.24□□□□□ -0.13
PTPRF-212ENST00000477970 PSDA5PKW4 1024 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-212ENST00000477970 SASS6Q6UVJ0 657 aa14.23□□□□□ -0.13
PTPRF-212ENST00000477970 ANKRD18AQ8IVF6 992 aa14.23□□□□□ -0.13
PTPRF-212ENST00000477970 CCAR1Q8IX12 1150 aaKnown RBP14.23□□□□□ -0.13
PTPRF-212ENST00000477970 LINC00301Q8NCQ3 95 aa14.23□□□□□ -0.13
PTPRF-212ENST00000477970 GNL3LQ9NVN8 582 aaKnown RBP14.23□□□□□ -0.13
PTPRF-212ENST00000477970 KIF23Q02241 960 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-212ENST00000477970 NAP1L2Q9ULW6 460 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-212ENST00000477970 APPP05067 770 aa14.23□□□□□ -0.13
PTPRF-212ENST00000477970 BCAMP50895 628 aa14.23□□□□□ -0.13
PTPRF-212ENST00000477970 CCDC73Q6ZRK6 1079 aa14.23□□□□□ -0.13
PTPRF-212ENST00000477970 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-212ENST00000477970 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.23□□□□□ -0.13
PTPRF-212ENST00000477970 COL1A1P02452 1464 aaPredicted RBP14.22□□□□□ -0.13
PTPRF-212ENST00000477970 KIF13BQ9NQT8 1826 aa14.22□□□□□ -0.13
PTPRF-212ENST00000477970 NTRK3Q16288 839 aa14.22□□□□□ -0.13
PTPRF-212ENST00000477970 MYSM1Q5VVJ2 828 aa14.22□□□□□ -0.13
PTPRF-212ENST00000477970 RNF41Q9H4P4 317 aaPredicted RBP14.22□□□□□ -0.13
PTPRF-212ENST00000477970 NARFQ9UHQ1 456 aa14.22□□□□□ -0.13
PTPRF-212ENST00000477970 DUOX1Q9NRD9 1551 aa14.22□□□□□ -0.13
PTPRF-212ENST00000477970 PTMAP06454 111 aaKnown RBP14.22□□□□□ -0.13
PTPRF-212ENST00000477970 CAMK4Q16566 473 aa14.22□□□□□ -0.13
PTPRF-212ENST00000477970 ERFEQ4G0M1 354 aa14.22□□□□□ -0.13
PTPRF-212ENST00000477970 TMTC2Q8N394 836 aa14.22□□□□□ -0.13
PTPRF-212ENST00000477970 GOLPH3LQ9H4A5 285 aa14.22□□□□□ -0.13
PTPRF-212ENST00000477970 B4E1Z4 1266 aa14.21□□□□□ -0.13
PTPRF-212ENST00000477970 ZBTB43O43298 467 aa14.21□□□□□ -0.13
PTPRF-212ENST00000477970 RPS6KA4O75676 772 aa14.21□□□□□ -0.13
PTPRF-212ENST00000477970 PCP11498 1178 aaKnown RBP14.21□□□□□ -0.13
PTPRF-212ENST00000477970 ANO6Q4KMQ2 910 aa14.21□□□□□ -0.13
PTPRF-212ENST00000477970 MRPS27Q92552 414 aaKnown RBP14.21□□□□□ -0.13
PTPRF-212ENST00000477970 CBX8Q9HC52 389 aa14.21□□□□□ -0.13
PTPRF-212ENST00000477970 KIAA2012Q0VF49 1180 aa14.21□□□□□ -0.13
PTPRF-212ENST00000477970 FMR1NBQ8N0W7 255 aaPredicted RBP14.21□□□□□ -0.13
PTPRF-212ENST00000477970 ARMT1Q9H993 441 aa14.21□□□□□ -0.13
PTPRF-212ENST00000477970 BCL2L12Q9HB09 334 aa14.21□□□□□ -0.13
PTPRF-212ENST00000477970 DENND2AQ9ULE3 1009 aa14.21□□□□□ -0.13
PTPRF-212ENST00000477970 AP5Z1O43299 807 aa14.21□□□□□ -0.14
PTPRF-212ENST00000477970 TPM2P07951 284 aa14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms