RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 MYH2Q9UKX2 1941 aa15.27■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 SP3Q02447 781 aa15.26■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 DIXDC1Q155Q3 683 aa15.26■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 ERO1BQ86YB8 467 aa15.26■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 FAM43AQ8N2R8 423 aa15.26■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 HOOK2Q96ED9 719 aa15.26■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 ERO1AQ96HE7 468 aa15.26■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 TMOD2Q9NZR1 351 aa15.26■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 DENND2AQ9ULE3 1009 aa15.26■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 PTPN22Q9Y2R2 807 aa15.26■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 TRIM17Q9Y577 477 aa15.26■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 CSADQ9Y600 493 aa15.26■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 AK9Q5TCS8 1911 aa15.25■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 PDS5AQ29RF7 1337 aaKnown RBP15.25■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 CCL15-CCL14A0A0B4J2E2 113 aa15.25■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 SLC34A2O95436 690 aa15.25■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 ADORA1P30542 326 aa15.25■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 NFIAQ12857 509 aa15.25■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 CCL15Q16663 113 aa15.25■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 CCDC102BQ68D86 513 aa15.25■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 CD99L2Q8TCZ2 262 aa15.25■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 ZKSCAN4Q969J2 545 aaPredicted RBP15.25■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 WRNIP1Q96S55 665 aa15.25■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 ZCCHC17Q9NP64 241 aaKnown RBP15.25■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 GNL3LQ9NVN8 582 aaKnown RBP15.25■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 FAM198AQ9UFP1 575 aa15.25■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.25■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 RBBP6Q7Z6E9 1792 aaKnown RBP15.24■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 IRF6O14896 467 aa15.24■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 LDHBP07195 334 aaKnown RBP15.24■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 GNAI3P08754 354 aa15.24■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 TIMM10P62072 90 aa15.24■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 PPIL2Q13356 520 aa15.24■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 DCAF15Q66K64 600 aa15.24■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 OTUD5Q96G74 571 aa15.24■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 FAM163AQ96GL9 167 aaPredicted RBP15.24■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 ATRNL1Q5VV63 1379 aa15.24■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 GAKO14976 1311 aa15.23■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 TRIM27P14373 513 aa15.23■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 INPP5BP32019 993 aa15.23■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 MAP3K10Q02779 954 aa15.23■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 PPATQ06203 517 aa15.23■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 MIGA2Q7L4E1 593 aa15.23■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 ZFPM1Q8IX07 1006 aa15.23■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 ARMC5Q96C12 935 aa15.23■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 IDI2Q9BXS1 227 aa15.23■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 ZNF341Q9BYN7 854 aa15.23■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 EFCC1Q9HA90 598 aa15.23■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 ZFYVE28Q9HCC9 887 aa15.23■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 RFX7Q2KHR2 1363 aa15.23■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 BTBD19C9JJ37 291 aa15.22■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 CETPP11597 493 aa15.22■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 MOGSQ13724 837 aa15.22■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 RASGRF1Q13972 1273 aa15.22■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 TAF1CQ15572 869 aaPredicted RBP15.22■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 NOL9Q5SY16 702 aaKnown RBP15.22■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 USP40Q9NVE5 1235 aa15.22■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 KCNH4Q9UQ05 1017 aa15.22■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 TNNQ9UQP3 1299 aa15.22■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 PHF20L1A8MW92 1017 aa15.21■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 SRGAP3O43295 1099 aa15.21■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 TLR2O60603 784 aa15.21■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 BCAR3O75815 825 aa15.21■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 TCP10Q12799 353 aa15.21■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 TFCP2Q12800 502 aa15.21■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 SNAPC2Q13487 334 aa15.21■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 ATF7IPQ6VMQ6 1270 aa15.21■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 ZGPATQ8N5A5 531 aaKnown RBP15.21■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 ZNF384Q8TF68 577 aa15.21■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 XAGE2Q96GT9 111 aa15.21■□□□□ 0.03
MSH5-SAPCD1-205ENST00000476085 A0A1B0GUL7 405 aa15.2■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 IPO8O15397 1037 aaKnown RBP15.2■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 SH3BP5LQ7L8J4 393 aa15.2■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 AKAP2Q9Y2D5 859 aa15.2■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 PNMA6EA0A0J9YXQ4 647 aa15.19■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 POTEFA5A3E0 1075 aa15.19■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 ENTPD3O75355 529 aa15.19■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 WDHD1O75717 1129 aaPredicted RBP15.19■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 C17orf99Q6UX52 265 aa15.19■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 ZSWIM8A7E2V4 1837 aa15.19■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 ADGRA2Q96PE1 1338 aa15.18■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 PHIPQ8WWQ0 1821 aa15.18■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 DOCK2Q92608 1830 aa15.18■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 PTPRFP10586 1907 aa15.18■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 NPM3O75607 178 aaKnown RBP15.18■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 GNAI2P04899 355 aa15.18■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 RHBDL3P58872 404 aa15.18■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 ANKRD23Q86SG2 305 aa15.18■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.18■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 DDX4Q9NQI0 724 aaKnown RBP15.18■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 GPR75-ASB3A0A0A6YYF3 556 aa15.17■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 ARID4AP29374 1257 aaPredicted RBP15.17■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 RGS3P49796 1198 aa15.17■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 LACTBP83111 547 aaPredicted RBP15.17■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 POLA2Q14181 598 aa15.17■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 MVPQ14764 893 aaKnown RBP15.17■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 PRPF38BQ5VTL8 546 aaKnown RBP15.17■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 SPTY2D1Q68D10 685 aaPredicted RBP15.17■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 ZNF333Q96JL9 665 aa15.17■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 HMG20BQ9P0W2 317 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms