RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 KLF18A0A0U1RQI7 1052 aa14.37□□□□□ -0.11
SYNE1-222ENST00000474655 SH2B2O14492 632 aaPredicted RBP14.37□□□□□ -0.11
SYNE1-222ENST00000474655 KRT85P78386 507 aa14.37□□□□□ -0.11
SYNE1-222ENST00000474655 SGMS1Q86VZ5 419 aa14.37□□□□□ -0.11
SYNE1-222ENST00000474655 IGDCC4Q8TDY8 1250 aa14.37□□□□□ -0.11
SYNE1-222ENST00000474655 SYAP1Q96A49 352 aaPredicted RBP14.37□□□□□ -0.11
SYNE1-222ENST00000474655 RAI14Q9P0K7 980 aa14.37□□□□□ -0.11
SYNE1-222ENST00000474655 ANKRD31Q8N7Z5 1873 aa14.36□□□□□ -0.11
SYNE1-222ENST00000474655 RGPD3A6NKT7 1758 aaPredicted RBP14.36□□□□□ -0.11
SYNE1-222ENST00000474655 RGPD4Q7Z3J3 1758 aa14.36□□□□□ -0.11
SYNE1-222ENST00000474655 MAGEB6P1A0A0J9YX57 407 aa14.36□□□□□ -0.11
SYNE1-222ENST00000474655 B4E1Z4 1266 aa14.36□□□□□ -0.11
SYNE1-222ENST00000474655 FDPSP14324 419 aaKnown RBP14.36□□□□□ -0.11
SYNE1-222ENST00000474655 LIFRP42702 1097 aa14.36□□□□□ -0.11
SYNE1-222ENST00000474655 GIMAP6Q6P9H5 292 aa14.36□□□□□ -0.11
SYNE1-222ENST00000474655 NSUN4Q96CB9 384 aaKnown RBP14.36□□□□□ -0.11
SYNE1-222ENST00000474655 DDX11Q96FC9 970 aa14.36□□□□□ -0.11
SYNE1-222ENST00000474655 KRT23Q9C075 422 aa14.36□□□□□ -0.11
SYNE1-222ENST00000474655 TACC3Q9Y6A5 838 aa14.36□□□□□ -0.11
SYNE1-222ENST00000474655 XDHP47989 1333 aa14.36□□□□□ -0.11
SYNE1-222ENST00000474655 LTBP1Q14766 1721 aa14.36□□□□□ -0.11
SYNE1-222ENST00000474655 POLRMTO00411 1230 aaKnown RBP14.35□□□□□ -0.11
SYNE1-222ENST00000474655 FIBPO43427 364 aa14.35□□□□□ -0.11
SYNE1-222ENST00000474655 HOXA10P31260 410 aaPredicted RBP14.35□□□□□ -0.11
SYNE1-222ENST00000474655 ST5P78524 1137 aa14.35□□□□□ -0.11
SYNE1-222ENST00000474655 LRSAM1Q6UWE0 723 aa14.35□□□□□ -0.11
SYNE1-222ENST00000474655 FERMT3Q86UX7 667 aa14.35□□□□□ -0.11
SYNE1-222ENST00000474655 TXNRD3Q86VQ6 643 aa14.35□□□□□ -0.11
SYNE1-222ENST00000474655 MIGA1Q8NAN2 632 aa14.35□□□□□ -0.11
SYNE1-222ENST00000474655 BRIP1Q9BX63 1249 aa14.35□□□□□ -0.11
SYNE1-222ENST00000474655 SCAND2PQ9GZW5 306 aaPredicted RBP14.35□□□□□ -0.11
SYNE1-222ENST00000474655 LAMB1P07942 1786 aa14.35□□□□□ -0.11
SYNE1-222ENST00000474655 NID2Q14112 1375 aa14.35□□□□□ -0.11
SYNE1-222ENST00000474655 GOLGA8BA8MQT2 603 aa14.34□□□□□ -0.11
SYNE1-222ENST00000474655 H3BQV1 296 aa14.34□□□□□ -0.11
SYNE1-222ENST00000474655 TDO2P48775 406 aa14.34□□□□□ -0.11
SYNE1-222ENST00000474655 DDR1Q08345 913 aa14.34□□□□□ -0.11
SYNE1-222ENST00000474655 IFFO2Q5TF58 517 aa14.34□□□□□ -0.11
SYNE1-222ENST00000474655 MFSD6Q6ZSS7 791 aa14.34□□□□□ -0.11
SYNE1-222ENST00000474655 TTC6Q86TZ1 520 aa14.34□□□□□ -0.11
SYNE1-222ENST00000474655 LY9Q9HBG7 655 aa14.34□□□□□ -0.11
SYNE1-222ENST00000474655 TFCP2L1Q9NZI6 479 aa14.34□□□□□ -0.11
SYNE1-222ENST00000474655 ZSWIM5Q9P217 1185 aa14.34□□□□□ -0.11
SYNE1-222ENST00000474655 DUOX1Q9NRD9 1551 aa14.34□□□□□ -0.11
SYNE1-222ENST00000474655 MECOMQ03112 1051 aa14.34□□□□□ -0.11
SYNE1-222ENST00000474655 CTDSPL2Q05D32 466 aa14.34□□□□□ -0.11
SYNE1-222ENST00000474655 APOA5Q6Q788 366 aa14.34□□□□□ -0.11
SYNE1-222ENST00000474655 TDRD7Q8NHU6 1098 aaKnown RBP14.34□□□□□ -0.11
SYNE1-222ENST00000474655 RPGRQ92834 1020 aaKnown RBP14.34□□□□□ -0.11
SYNE1-222ENST00000474655 RNF41Q9H4P4 317 aaPredicted RBP14.34□□□□□ -0.11
SYNE1-222ENST00000474655 MYH2Q9UKX2 1941 aa14.33□□□□□ -0.11
SYNE1-222ENST00000474655 DLEC1Q9Y238 1755 aa14.33□□□□□ -0.11
SYNE1-222ENST00000474655 ECM29Q5VYK3 1845 aa14.33□□□□□ -0.12
SYNE1-222ENST00000474655 FGRP09769 529 aa14.33□□□□□ -0.12
SYNE1-222ENST00000474655 PPARAQ07869 468 aa14.33□□□□□ -0.12
SYNE1-222ENST00000474655 ATL3Q6DD88 541 aa14.33□□□□□ -0.12
SYNE1-222ENST00000474655 AKT1S1Q96B36 256 aa14.33□□□□□ -0.12
SYNE1-222ENST00000474655 RBM17Q96I25 401 aaKnown RBP14.33□□□□□ -0.12
SYNE1-222ENST00000474655 CRAMP1Q96RY5 1269 aa14.33□□□□□ -0.12
SYNE1-222ENST00000474655 PANK2Q9BZ23 570 aa14.33□□□□□ -0.12
SYNE1-222ENST00000474655 ANKIB1Q9P2G1 1089 aa14.33□□□□□ -0.12
SYNE1-222ENST00000474655 TNS1Q9HBL0 1735 aaKnown RBP14.33□□□□□ -0.12
SYNE1-222ENST00000474655 SYCE3A1L190 88 aa14.32□□□□□ -0.12
SYNE1-222ENST00000474655 KDM4AO75164 1064 aa14.32□□□□□ -0.12
SYNE1-222ENST00000474655 BBOX1O75936 387 aa14.32□□□□□ -0.12
SYNE1-222ENST00000474655 PCP11498 1178 aaKnown RBP14.32□□□□□ -0.12
SYNE1-222ENST00000474655 ADD1P35611 737 aaKnown RBP14.32□□□□□ -0.12
SYNE1-222ENST00000474655 SPTY2D1Q68D10 685 aaPredicted RBP14.32□□□□□ -0.12
SYNE1-222ENST00000474655 FAM173BQ6P4H8 233 aa14.32□□□□□ -0.12
SYNE1-222ENST00000474655 INCENPQ9NQS7 918 aa14.32□□□□□ -0.12
SYNE1-222ENST00000474655 PODXL2Q9NZ53 605 aa14.32□□□□□ -0.12
SYNE1-222ENST00000474655 NAP1L2Q9ULW6 460 aaPredicted RBP14.32□□□□□ -0.12
SYNE1-222ENST00000474655 LETM1O95202 739 aaPredicted RBP14.32□□□□□ -0.12
SYNE1-222ENST00000474655 RCAN1P53805 252 aa14.32□□□□□ -0.12
SYNE1-222ENST00000474655 CCDC183Q5T5S1 534 aa14.32□□□□□ -0.12
SYNE1-222ENST00000474655 WDR66Q8TBY9 1149 aa14.32□□□□□ -0.12
SYNE1-222ENST00000474655 SDR42E1Q8WUS8 393 aa14.32□□□□□ -0.12
SYNE1-222ENST00000474655 LEO1Q8WVC0 666 aaPredicted RBP14.32□□□□□ -0.12
SYNE1-222ENST00000474655 ATP2B4P23634 1241 aa14.31□□□□□ -0.12
SYNE1-222ENST00000474655 PRDX5P30044 214 aa14.31□□□□□ -0.12
SYNE1-222ENST00000474655 DYNLL1P63167 89 aaKnown RBP14.31□□□□□ -0.12
SYNE1-222ENST00000474655 TMEM67Q5HYA8 995 aa14.31□□□□□ -0.12
SYNE1-222ENST00000474655 TMC4Q7Z404 712 aa14.31□□□□□ -0.12
SYNE1-222ENST00000474655 NLGN1Q8N2Q7 840 aa14.31□□□□□ -0.12
SYNE1-222ENST00000474655 TMTC2Q8N394 836 aa14.31□□□□□ -0.12
SYNE1-222ENST00000474655 SENP2Q9HC62 589 aa14.31□□□□□ -0.12
SYNE1-222ENST00000474655 CFAP45Q9UL16 551 aa14.31□□□□□ -0.12
SYNE1-222ENST00000474655 CPLX1O14810 134 aa14.3□□□□□ -0.12
SYNE1-222ENST00000474655 METAP2P50579 478 aaKnown RBP eCLIP14.3□□□□□ -0.12
SYNE1-222ENST00000474655 GPSM2P81274 684 aa14.3□□□□□ -0.12
SYNE1-222ENST00000474655 NTRK3Q16288 839 aa14.3□□□□□ -0.12
SYNE1-222ENST00000474655 ZNF827Q17R98 1081 aa14.3□□□□□ -0.12
SYNE1-222ENST00000474655 ZNF804AQ7Z570 1209 aa14.3□□□□□ -0.12
SYNE1-222ENST00000474655 FBXO18Q8NFZ0 1043 aa14.3□□□□□ -0.12
SYNE1-222ENST00000474655 SPATA32Q96LK8 384 aa14.3□□□□□ -0.12
SYNE1-222ENST00000474655 ATP8A2Q9NTI2 1148 aa14.3□□□□□ -0.12
SYNE1-222ENST00000474655 FAM217BQ9NTX9 383 aaPredicted RBP14.3□□□□□ -0.12
SYNE1-222ENST00000474655 ORC3Q9UBD5 711 aaPredicted RBP14.3□□□□□ -0.12
SYNE1-222ENST00000474655 IFIT3O14879 490 aaKnown RBP14.29□□□□□ -0.12
SYNE1-222ENST00000474655 ZBTB43O43298 467 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms