RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PPP1R12CQ9BZL4 782 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 PUF60Q9UHX1 559 aaKnown RBP14.86□□□□□ -0.03
COL6A3-209ENST00000472056 GCKP35557 465 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 SLC9C1Q4G0N8 1177 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 ANKRD44Q8N8A2 993 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 LRRD1A4D1F6 860 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 EPB41P11171 864 aaKnown RBP14.86□□□□□ -0.03
COL6A3-209ENST00000472056 VSIG1Q86XK7 387 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 CNPY4Q8N129 248 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 ITIH3Q06033 890 aa14.85□□□□□ -0.03
COL6A3-209ENST00000472056 TOM1L2Q6ZVM7 507 aa14.85□□□□□ -0.03
COL6A3-209ENST00000472056 TYW1Q9NV66 732 aaKnown RBP14.85□□□□□ -0.03
COL6A3-209ENST00000472056 DUOX2Q9NRD8 1548 aa14.85□□□□□ -0.03
COL6A3-209ENST00000472056 CACNA1FO60840 1977 aa14.85□□□□□ -0.03
COL6A3-209ENST00000472056 KLHL14Q9P2G3 628 aa14.85□□□□□ -0.03
COL6A3-209ENST00000472056 MYO1AQ9UBC5 1043 aa14.85□□□□□ -0.03
COL6A3-209ENST00000472056 RHOXF2BP0C7M4 288 aa14.85□□□□□ -0.03
COL6A3-209ENST00000472056 RHOXF2Q9BQY4 288 aa14.85□□□□□ -0.03
COL6A3-209ENST00000472056 GDPD2Q9HCC8 539 aa14.85□□□□□ -0.03
COL6A3-209ENST00000472056 PHBP35232 272 aa14.85□□□□□ -0.03
COL6A3-209ENST00000472056 PDE1AP54750 535 aa14.85□□□□□ -0.03
COL6A3-209ENST00000472056 SEPT2Q15019 361 aa14.85□□□□□ -0.03
COL6A3-209ENST00000472056 LZTFL1Q9NQ48 299 aa14.85□□□□□ -0.03
COL6A3-209ENST00000472056 ANKIB1Q9P2G1 1089 aa14.85□□□□□ -0.03
COL6A3-209ENST00000472056 ANKRD20A3Q5VUR7 823 aa14.85□□□□□ -0.03
COL6A3-209ENST00000472056 RUFY3Q7L099 469 aa14.85□□□□□ -0.03
COL6A3-209ENST00000472056 TROVE2P10155 538 aaKnown RBP eCLIP14.84□□□□□ -0.03
COL6A3-209ENST00000472056 ZPR1O75312 459 aa14.84□□□□□ -0.03
COL6A3-209ENST00000472056 TRIM4Q9C037 500 aa14.84□□□□□ -0.03
COL6A3-209ENST00000472056 DNM1Q05193 864 aaKnown RBP14.84□□□□□ -0.03
COL6A3-209ENST00000472056 SLC4A8Q2Y0W8 1093 aa14.84□□□□□ -0.03
COL6A3-209ENST00000472056 LIN9Q5TKA1 542 aa14.84□□□□□ -0.03
COL6A3-209ENST00000472056 KRT79Q5XKE5 535 aa14.84□□□□□ -0.03
COL6A3-209ENST00000472056 MMRN2Q9H8L6 949 aa14.84□□□□□ -0.03
COL6A3-209ENST00000472056 CCDC152Q4G0S7 254 aa14.84□□□□□ -0.03
COL6A3-209ENST00000472056 RASEFQ8IZ41 740 aa14.84□□□□□ -0.03
COL6A3-209ENST00000472056 PPP4R1Q8TF05 950 aa14.84□□□□□ -0.03
COL6A3-209ENST00000472056 PHACTR2O75167 634 aa14.84□□□□□ -0.03
COL6A3-209ENST00000472056 ARL1P40616 181 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-209ENST00000472056 PRPF31Q8WWY3 499 aaKnown RBP14.84□□□□□ -0.03
COL6A3-209ENST00000472056 ZNF644Q9H582 1327 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-209ENST00000472056 SYNRGQ9UMZ2 1314 aa14.84□□□□□ -0.03
COL6A3-209ENST00000472056 PLCB3Q01970 1234 aa14.84□□□□□ -0.03
COL6A3-209ENST00000472056 GUCY1B3Q02153 619 aa14.84□□□□□ -0.03
COL6A3-209ENST00000472056 IGSF22Q8N9C0 903 aa14.84□□□□□ -0.03
COL6A3-209ENST00000472056 HSPA8P11142 646 aaKnown RBP14.83□□□□□ -0.03
COL6A3-209ENST00000472056 EPS15L1Q9UBC2 864 aa14.83□□□□□ -0.03
COL6A3-209ENST00000472056 TMOD4Q9NZQ9 345 aa14.83□□□□□ -0.03
COL6A3-209ENST00000472056 ARHGAP4P98171 946 aa14.83□□□□□ -0.04
COL6A3-209ENST00000472056 NUTM2GQ5VZR2 741 aa14.83□□□□□ -0.04
COL6A3-209ENST00000472056 TUBB6Q9BUF5 446 aa14.83□□□□□ -0.04
COL6A3-209ENST00000472056 ALDH1L1O75891 902 aa14.83□□□□□ -0.04
COL6A3-209ENST00000472056 SNCBQ16143 134 aa14.83□□□□□ -0.04
COL6A3-209ENST00000472056 PDCD2Q16342 344 aaPredicted RBP14.83□□□□□ -0.04
COL6A3-209ENST00000472056 UHRF1BP1Q6BDS2 1440 aa14.83□□□□□ -0.04
COL6A3-209ENST00000472056 LAMC3Q9Y6N6 1575 aa14.83□□□□□ -0.04
COL6A3-209ENST00000472056 KLF18A0A0U1RQI7 1052 aa14.83□□□□□ -0.04
COL6A3-209ENST00000472056 ZNF131P52739 623 aa14.83□□□□□ -0.04
COL6A3-209ENST00000472056 DHX32Q7L7V1 743 aaKnown RBP14.83□□□□□ -0.04
COL6A3-209ENST00000472056 WHAMMQ8TF30 809 aa14.83□□□□□ -0.04
COL6A3-209ENST00000472056 SLC8A3P57103 927 aa14.83□□□□□ -0.04
COL6A3-209ENST00000472056 ZKSCAN8Q15776 578 aaPredicted RBP14.83□□□□□ -0.04
COL6A3-209ENST00000472056 SPDYE3A6NKU9 549 aa14.83□□□□□ -0.04
COL6A3-209ENST00000472056 PFDN4Q9NQP4 134 aa14.83□□□□□ -0.04
COL6A3-209ENST00000472056 RAPGEF6Q8TEU7 1601 aa14.83□□□□□ -0.04
COL6A3-209ENST00000472056 EEF2P13639 858 aaKnown RBP14.82□□□□□ -0.04
COL6A3-209ENST00000472056 HPDP32754 393 aaPredicted RBP14.82□□□□□ -0.04
COL6A3-209ENST00000472056 LEO1Q8WVC0 666 aaPredicted RBP14.82□□□□□ -0.04
COL6A3-209ENST00000472056 CAPZA3Q96KX2 299 aa14.82□□□□□ -0.04
COL6A3-209ENST00000472056 SAMM50Q9Y512 469 aa14.82□□□□□ -0.04
COL6A3-209ENST00000472056 CCDC170Q8IYT3 715 aa14.82□□□□□ -0.04
COL6A3-209ENST00000472056 ZFP91Q96JP5 570 aaPredicted RBP14.82□□□□□ -0.04
COL6A3-209ENST00000472056 MYH9P35579 1960 aaKnown RBP14.82□□□□□ -0.04
COL6A3-209ENST00000472056 MICAL1Q8TDZ2 1067 aa14.82□□□□□ -0.04
COL6A3-209ENST00000472056 ZRANB1Q9UGI0 708 aa14.82□□□□□ -0.04
COL6A3-209ENST00000472056 HSPA1LP34931 641 aa14.82□□□□□ -0.04
COL6A3-209ENST00000472056 SECISBP2LQ93073 1101 aaKnown RBP14.82□□□□□ -0.04
COL6A3-209ENST00000472056 RIOK3O14730 519 aaKnown RBP14.82□□□□□ -0.04
COL6A3-209ENST00000472056 ERCC3P19447 782 aa14.82□□□□□ -0.04
COL6A3-209ENST00000472056 NRBF2Q96F24 287 aa14.82□□□□□ -0.04
COL6A3-209ENST00000472056 MAN1A1P33908 653 aa14.82□□□□□ -0.04
COL6A3-209ENST00000472056 PPP1R42Q7Z4L9 355 aa14.82□□□□□ -0.04
COL6A3-209ENST00000472056 VEZTQ9HBM0 779 aa14.82□□□□□ -0.04
COL6A3-209ENST00000472056 CRCPO75575 148 aa14.81□□□□□ -0.04
COL6A3-209ENST00000472056 CABP5Q9NP86 173 aa14.81□□□□□ -0.04
COL6A3-209ENST00000472056 TMOD3Q9NYL9 352 aa14.81□□□□□ -0.04
COL6A3-209ENST00000472056 ZNF75DP51815 510 aa14.81□□□□□ -0.04
COL6A3-209ENST00000472056 GRK7Q8WTQ7 553 aa14.81□□□□□ -0.04
COL6A3-209ENST00000472056 CALUO43852 315 aaPredicted RBP14.81□□□□□ -0.04
COL6A3-209ENST00000472056 DMTNQ08495 405 aa14.81□□□□□ -0.04
COL6A3-209ENST00000472056 PANK2Q9BZ23 570 aa14.81□□□□□ -0.04
COL6A3-209ENST00000472056 BCRP11274 1271 aa14.81□□□□□ -0.04
COL6A3-209ENST00000472056 PARD3Q8TEW0 1356 aa14.81□□□□□ -0.04
COL6A3-209ENST00000472056 STX10O60499 249 aa14.81□□□□□ -0.04
COL6A3-209ENST00000472056 AFMP43652 599 aa14.81□□□□□ -0.04
COL6A3-209ENST00000472056 HAUS3Q68CZ6 603 aa14.81□□□□□ -0.04
COL6A3-209ENST00000472056 CCDC25Q86WR0 208 aa14.81□□□□□ -0.04
COL6A3-209ENST00000472056 RGS22Q8NE09 1264 aa14.81□□□□□ -0.04
COL6A3-209ENST00000472056 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.81□□□□□ -0.04
COL6A3-209ENST00000472056 RAD54L2Q9Y4B4 1467 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms