RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 MROH7-TTC4A0A0A0MT08 1334 aa11.11□□□□□ -0.63
VPS52-216ENST00000471309 MYH2Q9UKX2 1941 aa11.11□□□□□ -0.63
VPS52-216ENST00000471309 CDK5RAP2Q96SN8 1893 aa11.11□□□□□ -0.63
VPS52-216ENST00000471309 RIMBP2O15034 1052 aa11.11□□□□□ -0.63
VPS52-216ENST00000471309 ZBTB7AO95365 584 aa11.11□□□□□ -0.63
VPS52-216ENST00000471309 LARGE1O95461 756 aa11.11□□□□□ -0.63
VPS52-216ENST00000471309 LDHCP07864 332 aa11.11□□□□□ -0.63
VPS52-216ENST00000471309 POLD1P28340 1107 aa11.11□□□□□ -0.63
VPS52-216ENST00000471309 MCM5P33992 734 aa11.11□□□□□ -0.63
VPS52-216ENST00000471309 DYNLL1P63167 89 aaKnown RBP11.11□□□□□ -0.63
VPS52-216ENST00000471309 RAB3GAP1Q15042 981 aa11.11□□□□□ -0.63
VPS52-216ENST00000471309 MFSD14BQ5SR56 506 aa11.11□□□□□ -0.63
VPS52-216ENST00000471309 SUPT20HQ8NEM7 779 aa11.11□□□□□ -0.63
VPS52-216ENST00000471309 TCEANC2Q96MN5 208 aa11.11□□□□□ -0.63
VPS52-216ENST00000471309 CRNKL1Q9BZJ0 848 aaKnown RBP11.11□□□□□ -0.63
VPS52-216ENST00000471309 TPCN1Q9ULQ1 816 aa11.11□□□□□ -0.63
VPS52-216ENST00000471309 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.11□□□□□ -0.63
VPS52-216ENST00000471309 GAKO14976 1311 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 PPP4CP60510 307 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 TGFB2P61812 414 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 NUCB2P80303 420 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 TRDNQ13061 729 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 GRIK5Q16478 980 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 ME3Q16798 604 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 CCDC93Q567U6 631 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 Q6ZUG5 572 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 PODNQ7Z5L7 613 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 SLF2Q8IX21 1173 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 TTLL6Q8N841 843 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 SDR42E1Q8WUS8 393 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 STAG1Q8WVM7 1258 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 CNNM2Q9H8M5 875 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 ATP8A2Q9NTI2 1148 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 AATFQ9NY61 560 aaKnown RBP eCLIP11.1□□□□□ -0.63
VPS52-216ENST00000471309 ANAPC4Q9UJX5 808 aa11.1□□□□□ -0.63
VPS52-216ENST00000471309 NEDD4P46934 1319 aa11.09□□□□□ -0.63
VPS52-216ENST00000471309 BAZ2AQ9UIF9 1905 aaKnown RBP11.09□□□□□ -0.63
VPS52-216ENST00000471309 PRC1O43663 620 aa11.09□□□□□ -0.63
VPS52-216ENST00000471309 BAG3O95817 575 aa11.09□□□□□ -0.63
VPS52-216ENST00000471309 DPEP1P16444 411 aa11.09□□□□□ -0.63
VPS52-216ENST00000471309 KCNA3P22001 575 aa11.09□□□□□ -0.63
VPS52-216ENST00000471309 EVCP57679 992 aa11.09□□□□□ -0.63
VPS52-216ENST00000471309 ANTXR2P58335 489 aa11.09□□□□□ -0.63
VPS52-216ENST00000471309 FKBP1AP62942 108 aaKnown RBP11.09□□□□□ -0.63
VPS52-216ENST00000471309 GTF2IP78347 998 aa11.09□□□□□ -0.63
VPS52-216ENST00000471309 FGD1P98174 961 aa11.09□□□□□ -0.63
VPS52-216ENST00000471309 PPARAQ07869 468 aa11.09□□□□□ -0.63
VPS52-216ENST00000471309 KIAA2012Q0VF49 1180 aa11.09□□□□□ -0.63
VPS52-216ENST00000471309 ST3GAL1Q11201 340 aa11.09□□□□□ -0.63
VPS52-216ENST00000471309 R3HDM1Q15032 1099 aaKnown RBP11.09□□□□□ -0.63
VPS52-216ENST00000471309 DIXDC1Q155Q3 683 aa11.09□□□□□ -0.63
VPS52-216ENST00000471309 AKNAD1Q5T1N1 836 aa11.09□□□□□ -0.63
VPS52-216ENST00000471309 SOGA3Q5TF21 947 aa11.09□□□□□ -0.63
VPS52-216ENST00000471309 BRF1Q92994 677 aa11.09□□□□□ -0.63
VPS52-216ENST00000471309 FAM163AQ96GL9 167 aaPredicted RBP11.09□□□□□ -0.63
VPS52-216ENST00000471309 NOL10Q9BSC4 688 aaKnown RBP11.09□□□□□ -0.63
VPS52-216ENST00000471309 RNF41Q9H4P4 317 aaPredicted RBP11.09□□□□□ -0.63
VPS52-216ENST00000471309 ARPP21Q9UBL0 812 aaPredicted RBP11.09□□□□□ -0.63
VPS52-216ENST00000471309 ROBO3Q96MS0 1386 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 GPR75-ASB3A0A0A6YYF3 556 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 G3V3G9 751 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 PCP11498 1178 aaKnown RBP11.08□□□□□ -0.64
VPS52-216ENST00000471309 PLCG2P16885 1265 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 DOK7Q18PE1 504 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 SBK1Q52WX2 424 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 DCAF8Q5TAQ9 597 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 CCDC83Q8IWF9 413 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 RTKN2Q8IZC4 609 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 GTF3C6Q969F1 213 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 PSMD1Q99460 953 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 SGIP1Q9BQI5 828 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 LARP6Q9BRS8 491 aaKnown RBP11.08□□□□□ -0.64
VPS52-216ENST00000471309 MTA3Q9BTC8 594 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 ANP32EQ9BTT0 268 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 KRT23Q9C075 422 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 DCP1AQ9NPI6 582 aaPredicted RBP11.08□□□□□ -0.64
VPS52-216ENST00000471309 SCN9AQ15858 1988 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 ADAMTSL1Q8N6G6 1762 aa11.08□□□□□ -0.64
VPS52-216ENST00000471309 FER1L6Q2WGJ9 1857 aa11.07□□□□□ -0.64
VPS52-216ENST00000471309 C21orf2O43822 256 aa11.07□□□□□ -0.64
VPS52-216ENST00000471309 ECE2O60344 883 aa11.07□□□□□ -0.64
VPS52-216ENST00000471309 PFKFB2O60825 505 aa11.07□□□□□ -0.64
VPS52-216ENST00000471309 BTDP43251 543 aa11.07□□□□□ -0.64
VPS52-216ENST00000471309 NT5C2P49902 561 aa11.07□□□□□ -0.64
VPS52-216ENST00000471309 CTDSPL2Q05D32 466 aa11.07□□□□□ -0.64
VPS52-216ENST00000471309 NFKBIBQ15653 356 aa11.07□□□□□ -0.64
VPS52-216ENST00000471309 MFSD6Q6ZSS7 791 aa11.07□□□□□ -0.64
VPS52-216ENST00000471309 CERS5Q8N5B7 392 aa11.07□□□□□ -0.64
VPS52-216ENST00000471309 SH3RF3Q8TEJ3 882 aaPredicted RBP11.07□□□□□ -0.64
VPS52-216ENST00000471309 TNPO1Q92973 898 aaKnown RBP11.07□□□□□ -0.64
VPS52-216ENST00000471309 CHMP4CQ96CF2 233 aa11.07□□□□□ -0.64
VPS52-216ENST00000471309 ZNF274Q96GC6 653 aaPredicted RBP11.07□□□□□ -0.64
VPS52-216ENST00000471309 TMEM87BQ96K49 555 aa11.07□□□□□ -0.64
VPS52-216ENST00000471309 LRRC2Q9BYS8 371 aa11.07□□□□□ -0.64
VPS52-216ENST00000471309 ZNF219Q9P2Y4 722 aaPredicted RBP11.07□□□□□ -0.64
VPS52-216ENST00000471309 SMC3Q9UQE7 1217 aa11.07□□□□□ -0.64
VPS52-216ENST00000471309 ATF5Q9Y2D1 282 aaPredicted RBP11.07□□□□□ -0.64
VPS52-216ENST00000471309 ECM29Q5VYK3 1845 aa11.07□□□□□ -0.64
VPS52-216ENST00000471309 B4E1Z4 1266 aa11.06□□□□□ -0.64
VPS52-216ENST00000471309 SH2B2O14492 632 aaPredicted RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms