RNA–Protein interactions for RNA: ENST00000470953.1

VARS-222, Transcript of valyl-tRNA synthetase, human

TSL 3

Gene VARS, Length 392 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-222	ENST00000470953	RPS8	P62241	208 aa	Known RBP	7.72	□□□□□ -1.17
VARS-222	ENST00000470953	SF3B3	Q15393	1217 aa	Known RBP	7.72	□□□□□ -1.17
VARS-222	ENST00000470953	SKIV2L	Q15477	1246 aa	Known RBP	7.72	□□□□□ -1.17
VARS-222	ENST00000470953	TAF7	Q15545	349 aa	Predicted RBP	7.72	□□□□□ -1.17
VARS-222	ENST00000470953	SUPT20HL1	Q3ZLR7	823 aa		7.72	□□□□□ -1.17
VARS-222	ENST00000470953	RTL5	Q5HYW3	569 aa	Predicted RBP	7.72	□□□□□ -1.17
VARS-222	ENST00000470953	CC2D1B	Q5T0F9	858 aa	Known RBP	7.72	□□□□□ -1.17
VARS-222	ENST00000470953	OGFOD1	Q8N543	542 aa		7.72	□□□□□ -1.17
VARS-222	ENST00000470953	FAM89A	Q96GI7	184 aa		7.72	□□□□□ -1.17
VARS-222	ENST00000470953	RSPH6A	Q9H0K4	717 aa		7.72	□□□□□ -1.17
VARS-222	ENST00000470953	HMX1	Q9NP08	348 aa	Predicted RBP	7.72	□□□□□ -1.17
VARS-222	ENST00000470953	ANKIB1	Q9P2G1	1089 aa		7.72	□□□□□ -1.17
VARS-222	ENST00000470953	PRKAG2	Q9UGJ0	569 aa		7.72	□□□□□ -1.17
VARS-222	ENST00000470953	GGA1	Q9UJY5	639 aa		7.72	□□□□□ -1.17
VARS-222	ENST00000470953	TRANK1	O15050	2925 aa		7.72	□□□□□ -1.17
VARS-222	ENST00000470953	PLXNA1	Q9UIW2	1896 aa		7.71	□□□□□ -1.18
VARS-222	ENST00000470953	COL4A6	Q14031	1691 aa		7.71	□□□□□ -1.18
VARS-222	ENST00000470953	BCR	P11274	1271 aa		7.71	□□□□□ -1.18
VARS-222	ENST00000470953	EPHB4	P54760	987 aa		7.71	□□□□□ -1.18
VARS-222	ENST00000470953	PTPN5	P54829	565 aa		7.71	□□□□□ -1.18
VARS-222	ENST00000470953	HFE2	Q6ZVN8	426 aa		7.71	□□□□□ -1.18
VARS-222	ENST00000470953	RIC3	Q7Z5B4	369 aa		7.71	□□□□□ -1.18
VARS-222	ENST00000470953	KIAA0825	Q8IV33	1275 aa		7.71	□□□□□ -1.18
VARS-222	ENST00000470953	MTMR14	Q8NCE2	650 aa		7.71	□□□□□ -1.18
VARS-222	ENST00000470953	RTF1	Q92541	710 aa	Known RBP	7.71	□□□□□ -1.18
VARS-222	ENST00000470953	FBXW7	Q969H0	707 aa		7.71	□□□□□ -1.18
VARS-222	ENST00000470953	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	7.7	□□□□□ -1.18
VARS-222	ENST00000470953	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	7.7	□□□□□ -1.18
VARS-222	ENST00000470953	PDHX	O00330	501 aa		7.7	□□□□□ -1.18
VARS-222	ENST00000470953	TNPO2	O14787	897 aa	Known RBP	7.7	□□□□□ -1.18
VARS-222	ENST00000470953	ATN1	P54259	1190 aa	Predicted RBP	7.7	□□□□□ -1.18
VARS-222	ENST00000470953	TCF15	Q12870	199 aa		7.7	□□□□□ -1.18
VARS-222	ENST00000470953	AIMP1	Q12904	312 aa	Known RBP	7.7	□□□□□ -1.18
VARS-222	ENST00000470953	IER5L	Q5T953	404 aa		7.7	□□□□□ -1.18
VARS-222	ENST00000470953	CDAN1	Q8IWY9	1227 aa		7.7	□□□□□ -1.18
VARS-222	ENST00000470953	PRDM5	Q9NQX1	630 aa	Predicted RBP	7.7	□□□□□ -1.18
VARS-222	ENST00000470953	PPP2R3B	Q9Y5P8	575 aa		7.7	□□□□□ -1.18
VARS-222	ENST00000470953	ZNF804B	A4D1E1	1349 aa		7.7	□□□□□ -1.18
VARS-222	ENST00000470953	PLXNA3	P51805	1871 aa		7.7	□□□□□ -1.18
VARS-222	ENST00000470953	ZNF292	O60281	2723 aa		7.7	□□□□□ -1.18
VARS-222	ENST00000470953	MAP1B	P46821	2468 aa	Known RBP	7.7	□□□□□ -1.18
VARS-222	ENST00000470953		A0A0G2JMZ2	1700 aa		7.69	□□□□□ -1.18
VARS-222	ENST00000470953	ECM29	Q5VYK3	1845 aa		7.69	□□□□□ -1.18
VARS-222	ENST00000470953	CLRN2	A0PK11	232 aa		7.69	□□□□□ -1.18
VARS-222	ENST00000470953	SOWAHB	A6NEL2	793 aa		7.69	□□□□□ -1.18
VARS-222	ENST00000470953	SPDYE5	A6NIY4	337 aa		7.69	□□□□□ -1.18
VARS-222	ENST00000470953	IRF6	O14896	467 aa		7.69	□□□□□ -1.18
VARS-222	ENST00000470953	HMGCR	P04035	888 aa		7.69	□□□□□ -1.18
VARS-222	ENST00000470953	RTP1	P59025	263 aa		7.69	□□□□□ -1.18
VARS-222	ENST00000470953	COPS6	Q7L5N1	327 aa		7.69	□□□□□ -1.18
VARS-222	ENST00000470953	TXNRD3	Q86VQ6	643 aa		7.69	□□□□□ -1.18
VARS-222	ENST00000470953	XAGE3	Q8WTP9	111 aa		7.69	□□□□□ -1.18
VARS-222	ENST00000470953	PBX4	Q9BYU1	374 aa		7.69	□□□□□ -1.18
VARS-222	ENST00000470953	SENP6	Q9GZR1	1112 aa	Predicted RBP	7.69	□□□□□ -1.18
VARS-222	ENST00000470953	MAST4	O15021	2626 aa		7.69	□□□□□ -1.18
VARS-222	ENST00000470953	USP24	Q9UPU5	2620 aa		7.69	□□□□□ -1.18
VARS-222	ENST00000470953	DOCK3	Q8IZD9	2030 aa		7.69	□□□□□ -1.18
VARS-222	ENST00000470953	GRXCR1	A8MXD5	290 aa		7.68	□□□□□ -1.18
VARS-222	ENST00000470953	CYP2C8	P10632	490 aa		7.68	□□□□□ -1.18
VARS-222	ENST00000470953	ALAD	P13716	330 aa		7.68	□□□□□ -1.18
VARS-222	ENST00000470953	EIF2S2	P20042	333 aa	Known RBP	7.68	□□□□□ -1.18
VARS-222	ENST00000470953	MAP3K9	P80192	1104 aa		7.68	□□□□□ -1.18
VARS-222	ENST00000470953	SNAPC2	Q13487	334 aa		7.68	□□□□□ -1.18
VARS-222	ENST00000470953	ST3GAL2	Q16842	350 aa		7.68	□□□□□ -1.18
VARS-222	ENST00000470953	STRIP1	Q5VSL9	837 aa		7.68	□□□□□ -1.18
VARS-222	ENST00000470953	ASCL5	Q7RTU5	278 aa		7.68	□□□□□ -1.18
VARS-222	ENST00000470953	ANKRD23	Q86SG2	305 aa		7.68	□□□□□ -1.18
VARS-222	ENST00000470953	CFAP53	Q96M91	514 aa		7.68	□□□□□ -1.18
VARS-222	ENST00000470953	ATP11B	Q9Y2G3	1177 aa		7.68	□□□□□ -1.18
VARS-222	ENST00000470953	ATRNL1	Q5VV63	1379 aa		7.68	□□□□□ -1.18
VARS-222	ENST00000470953	RIF1	Q5UIP0	2472 aa	Known RBP	7.67	□□□□□ -1.18
VARS-222	ENST00000470953	ATP5J2-PTCD1	G3V325	749 aa		7.67	□□□□□ -1.18
VARS-222	ENST00000470953	SH3RF1	Q7Z6J0	888 aa		7.67	□□□□□ -1.18
VARS-222	ENST00000470953	GJD3	Q8N144	294 aa		7.67	□□□□□ -1.18
VARS-222	ENST00000470953	CERS5	Q8N5B7	392 aa		7.67	□□□□□ -1.18
VARS-222	ENST00000470953	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	7.67	□□□□□ -1.18
VARS-222	ENST00000470953	HERVK_113	Q902F9	699 aa		7.67	□□□□□ -1.18
VARS-222	ENST00000470953	CCDC85A	Q96PX6	553 aa	Predicted RBP	7.67	□□□□□ -1.18
VARS-222	ENST00000470953	CSAD	Q9Y600	493 aa		7.67	□□□□□ -1.18
VARS-222	ENST00000470953	SNCAIP	Q9Y6H5	919 aa		7.67	□□□□□ -1.18
VARS-222	ENST00000470953	FAM186A	A6NE01	2351 aa		7.66	□□□□□ -1.18
VARS-222	ENST00000470953	TRIM43B	A6NCK2	446 aa		7.66	□□□□□ -1.18
VARS-222	ENST00000470953	IRS4	O14654	1257 aa	Predicted RBP	7.66	□□□□□ -1.18
VARS-222	ENST00000470953	ATP2B4	P23634	1241 aa		7.66	□□□□□ -1.18
VARS-222	ENST00000470953	KLRK1	P26718	216 aa		7.66	□□□□□ -1.18
VARS-222	ENST00000470953	RASA3	Q14644	834 aa		7.66	□□□□□ -1.18
VARS-222	ENST00000470953	HSP90AB3P	Q58FF7	597 aa		7.66	□□□□□ -1.18
VARS-222	ENST00000470953	CCDC129	Q6ZRS4	1044 aa		7.66	□□□□□ -1.18
VARS-222	ENST00000470953	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	7.66	□□□□□ -1.18
VARS-222	ENST00000470953	TRIM43	Q96BQ3	446 aa	Predicted RBP	7.66	□□□□□ -1.18
VARS-222	ENST00000470953	PRMT6	Q96LA8	375 aa	Predicted RBP	7.66	□□□□□ -1.18
VARS-222	ENST00000470953	MFSD14A	Q96MC6	490 aa		7.66	□□□□□ -1.18
VARS-222	ENST00000470953	VEZT	Q9HBM0	779 aa		7.66	□□□□□ -1.18
VARS-222	ENST00000470953	COG5	Q9UP83	839 aa		7.66	□□□□□ -1.18
VARS-222	ENST00000470953	XDH	P47989	1333 aa		7.66	□□□□□ -1.18
VARS-222	ENST00000470953	FRMPD3	Q5JV73	1810 aa		7.66	□□□□□ -1.18
VARS-222	ENST00000470953	AK9	Q5TCS8	1911 aa		7.66	□□□□□ -1.18
VARS-222	ENST00000470953	DCX	O43602	365 aa		7.65	□□□□□ -1.18
VARS-222	ENST00000470953	HTATSF1	O43719	755 aa	Known RBP	7.65	□□□□□ -1.18
VARS-222	ENST00000470953	FLNB	O75369	2602 aa	Known RBP	7.65	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms