RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 DAXXQ9UER7 740 aaPredicted RBP7.2□□□□□ -1.26
USP39-213ENST00000467885 ABCF2Q9UG63 623 aa7.2□□□□□ -1.26
USP39-213ENST00000467885 KIF13BQ9NQT8 1826 aa7.2□□□□□ -1.26
USP39-213ENST00000467885 MYH3P11055 1940 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 SRCAPQ6ZRS2 3230 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 PSMD14O00487 310 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 SGSM2O43147 1006 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 GRIN3BO60391 1043 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 IDH1O75874 414 aaKnown RBP7.19□□□□□ -1.26
USP39-213ENST00000467885 RAD17O75943 681 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 ZFYP08048 801 aaPredicted RBP7.19□□□□□ -1.26
USP39-213ENST00000467885 PDE6AP16499 860 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 LMNB1P20700 586 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 PPP4CP60510 307 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 RASSF7Q02833 373 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 MAP3K12Q12852 859 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 NMIQ13287 307 aaPredicted RBP7.19□□□□□ -1.26
USP39-213ENST00000467885 GPR162Q16538 588 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 MCMDC2Q4G0Z9 681 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 SPTY2D1Q68D10 685 aaPredicted RBP7.19□□□□□ -1.26
USP39-213ENST00000467885 CWC27Q6UX04 472 aaKnown RBP7.19□□□□□ -1.26
USP39-213ENST00000467885 ADGRA1Q86SQ6 560 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 MAGEB6Q8N7X4 407 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 TBC1D22AQ8WUA7 517 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 JDP2Q8WYK2 163 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 STRBPQ96SI9 672 aaKnown RBP7.19□□□□□ -1.26
USP39-213ENST00000467885 FSD1Q9BTV5 496 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 USP26Q9BXU7 913 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 HELLSQ9NRZ9 838 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 SUGT1Q9Y2Z0 365 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 ZNF532Q9HCE3 1301 aa7.19□□□□□ -1.26
USP39-213ENST00000467885 KIAA1551Q9HCM1 1747 aa7.18□□□□□ -1.26
USP39-213ENST00000467885 DUOX1Q9NRD9 1551 aa7.18□□□□□ -1.26
USP39-213ENST00000467885 GPR75-ASB3A0A0A6YYF3 556 aa7.18□□□□□ -1.26
USP39-213ENST00000467885 A0A0D9SFI3 127 aa7.18□□□□□ -1.26
USP39-213ENST00000467885 HIP1O00291 1037 aa7.18□□□□□ -1.26
USP39-213ENST00000467885 FOXP2O15409 715 aa7.18□□□□□ -1.26
USP39-213ENST00000467885 LDHBP07195 334 aaKnown RBP7.18□□□□□ -1.26
USP39-213ENST00000467885 CYP7A1P22680 504 aa7.18□□□□□ -1.26
USP39-213ENST00000467885 LSM11P83369 360 aaKnown RBP eCLIP7.18□□□□□ -1.26
USP39-213ENST00000467885 HDLBPQ00341 1268 aaKnown RBP7.18□□□□□ -1.26
USP39-213ENST00000467885 PTH1RQ03431 593 aa7.18□□□□□ -1.26
USP39-213ENST00000467885 MFSD14BQ5SR56 506 aa7.18□□□□□ -1.26
USP39-213ENST00000467885 CIAPIN1Q6FI81 312 aa7.18□□□□□ -1.26
USP39-213ENST00000467885 ZSCAN25Q6NSZ9 544 aa7.18□□□□□ -1.26
USP39-213ENST00000467885 RSBN1LQ6PCB5 846 aaPredicted RBP7.18□□□□□ -1.26
USP39-213ENST00000467885 TMED8Q6PL24 325 aaPredicted RBP7.18□□□□□ -1.26
USP39-213ENST00000467885 NIM1KQ8IY84 436 aa7.18□□□□□ -1.26
USP39-213ENST00000467885 ZGPATQ8N5A5 531 aaKnown RBP7.18□□□□□ -1.26
USP39-213ENST00000467885 APPBP2Q92624 585 aa7.18□□□□□ -1.26
USP39-213ENST00000467885 MAP4K1Q92918 833 aa7.18□□□□□ -1.26
USP39-213ENST00000467885 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.18□□□□□ -1.26
USP39-213ENST00000467885 RAI14Q9P0K7 980 aa7.18□□□□□ -1.26
USP39-213ENST00000467885 COL11A2P13942 1736 aaPredicted RBP7.18□□□□□ -1.26
USP39-213ENST00000467885 COL1A1P02452 1464 aaPredicted RBP7.17□□□□□ -1.26
USP39-213ENST00000467885 PATL2C9JE40 543 aaKnown RBP7.17□□□□□ -1.26
USP39-213ENST00000467885 M0R2C6 588 aa7.17□□□□□ -1.26
USP39-213ENST00000467885 LDHCP07864 332 aa7.17□□□□□ -1.26
USP39-213ENST00000467885 DYNLL1P63167 89 aaKnown RBP7.17□□□□□ -1.26
USP39-213ENST00000467885 TNIP1Q15025 636 aa7.17□□□□□ -1.26
USP39-213ENST00000467885 NECTIN1Q15223 517 aa7.17□□□□□ -1.26
USP39-213ENST00000467885 C9orf131Q5VYM1 1079 aa7.17□□□□□ -1.26
USP39-213ENST00000467885 NAA16Q6N069 864 aaPredicted RBP7.17□□□□□ -1.26
USP39-213ENST00000467885 APOBEC3HQ6NTF7 200 aaKnown RBP7.17□□□□□ -1.26
USP39-213ENST00000467885 HHIPL2Q6UWX4 724 aa7.17□□□□□ -1.26
USP39-213ENST00000467885 CCDC129Q6ZRS4 1044 aa7.17□□□□□ -1.26
USP39-213ENST00000467885 ZNF589Q86UQ0 364 aaPredicted RBP7.17□□□□□ -1.26
USP39-213ENST00000467885 RUFY2Q8WXA3 655 aa7.17□□□□□ -1.26
USP39-213ENST00000467885 DPF2Q92785 391 aa7.17□□□□□ -1.26
USP39-213ENST00000467885 PRMT6Q96LA8 375 aaPredicted RBP7.17□□□□□ -1.26
USP39-213ENST00000467885 RIOK1Q9BRS2 568 aaKnown RBP7.17□□□□□ -1.26
USP39-213ENST00000467885 LSG1Q9H089 658 aaKnown RBP7.17□□□□□ -1.26
USP39-213ENST00000467885 DIAPH3Q9NSV4 1193 aa7.17□□□□□ -1.26
USP39-213ENST00000467885 TTF2Q9UNY4 1162 aaKnown RBP7.17□□□□□ -1.26
USP39-213ENST00000467885 COL4A5P29400 1685 aa7.16□□□□□ -1.26
USP39-213ENST00000467885 LTBP1Q14766 1721 aa7.16□□□□□ -1.26
USP39-213ENST00000467885 GSG1L2A8MUP6 293 aa7.16□□□□□ -1.26
USP39-213ENST00000467885 KIF3CO14782 793 aa7.16□□□□□ -1.26
USP39-213ENST00000467885 EPB41L2O43491 1005 aaKnown RBP7.16□□□□□ -1.26
USP39-213ENST00000467885 PRKAB2O43741 272 aa7.16□□□□□ -1.26
USP39-213ENST00000467885 SCNN1DP51172 638 aa7.16□□□□□ -1.26
USP39-213ENST00000467885 RHBDL3P58872 404 aa7.16□□□□□ -1.26
USP39-213ENST00000467885 ZNF280AP59817 542 aaPredicted RBP7.16□□□□□ -1.26
USP39-213ENST00000467885 DIXDC1Q155Q3 683 aa7.16□□□□□ -1.26
USP39-213ENST00000467885 ALX1Q15699 326 aa7.16□□□□□ -1.26
USP39-213ENST00000467885 LRRFIP1Q32MZ4 808 aaKnown RBP7.16□□□□□ -1.26
USP39-213ENST00000467885 VPS53Q5VIR6 699 aa7.16□□□□□ -1.26
USP39-213ENST00000467885 KIAA0825Q8IV33 1275 aa7.16□□□□□ -1.26
USP39-213ENST00000467885 AGBL3Q8NEM8 1001 aa7.16□□□□□ -1.26
USP39-213ENST00000467885 KCNB2Q92953 911 aa7.16□□□□□ -1.26
USP39-213ENST00000467885 ZBED3Q96IU2 234 aaPredicted RBP7.16□□□□□ -1.26
USP39-213ENST00000467885 MKRN1Q9UHC7 482 aaKnown RBP7.16□□□□□ -1.26
USP39-213ENST00000467885 PCDHAC2Q9Y5I4 1007 aa7.16□□□□□ -1.26
USP39-213ENST00000467885 LRRC37AA6NMS7 1700 aa7.15□□□□□ -1.26
USP39-213ENST00000467885 MAGEB6P1A0A0J9YX57 407 aa7.15□□□□□ -1.26
USP39-213ENST00000467885 SHTN1A0MZ66 631 aa7.15□□□□□ -1.26
USP39-213ENST00000467885 F8W031 263 aaPredicted RBP7.15□□□□□ -1.26
USP39-213ENST00000467885 GPAA1O43292 621 aa7.15□□□□□ -1.26
USP39-213ENST00000467885 DDNO94850 711 aaPredicted RBP7.15□□□□□ -1.26
USP39-213ENST00000467885 FGAP02671 866 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms