RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 TRPM4Q8TD43 1214 aa18.31■□□□□ 0.52
NPHP4-205ENST00000466897 ZC3H15Q8WU90 426 aaKnown RBP18.31■□□□□ 0.52
NPHP4-205ENST00000466897 PRMT6Q96LA8 375 aaPredicted RBP18.31■□□□□ 0.52
NPHP4-205ENST00000466897 NOL10Q9BSC4 688 aaKnown RBP18.31■□□□□ 0.52
NPHP4-205ENST00000466897 HELLSQ9NRZ9 838 aa18.31■□□□□ 0.52
NPHP4-205ENST00000466897 RAD50Q92878 1312 aa18.3■□□□□ 0.52
NPHP4-205ENST00000466897 PITPNM2Q9BZ72 1349 aa18.3■□□□□ 0.52
NPHP4-205ENST00000466897 MYH1P12882 1939 aa18.3■□□□□ 0.52
NPHP4-205ENST00000466897 BTDP43251 543 aa18.3■□□□□ 0.52
NPHP4-205ENST00000466897 TBC1D10BQ4KMP7 808 aaPredicted RBP18.3■□□□□ 0.52
NPHP4-205ENST00000466897 RIOK1Q9BRS2 568 aaKnown RBP18.3■□□□□ 0.52
NPHP4-205ENST00000466897 RRAGCQ9HB90 399 aa18.3■□□□□ 0.52
NPHP4-205ENST00000466897 DIAPH3Q9NSV4 1193 aa18.3■□□□□ 0.52
NPHP4-205ENST00000466897 PGAP2Q9UHJ9 254 aa18.3■□□□□ 0.52
NPHP4-205ENST00000466897 MAGEB6P1A0A0J9YX57 407 aa18.29■□□□□ 0.52
NPHP4-205ENST00000466897 CHGBP05060 677 aa18.29■□□□□ 0.52
NPHP4-205ENST00000466897 CHMLP26374 656 aa18.29■□□□□ 0.52
NPHP4-205ENST00000466897 HIRAP54198 1017 aaPredicted RBP18.29■□□□□ 0.52
NPHP4-205ENST00000466897 RHBDL3P58872 404 aa18.29■□□□□ 0.52
NPHP4-205ENST00000466897 SPDYE2Q495Y8 402 aa18.29■□□□□ 0.52
NPHP4-205ENST00000466897 FKBP1CQ5VVH2 108 aa18.29■□□□□ 0.52
NPHP4-205ENST00000466897 OSBP2Q969R2 916 aa18.29■□□□□ 0.52
NPHP4-205ENST00000466897 GPBP1L1Q9HC44 474 aaPredicted RBP18.29■□□□□ 0.52
NPHP4-205ENST00000466897 NMRK2Q9NPI5 230 aa18.29■□□□□ 0.52
NPHP4-205ENST00000466897 NPM3O75607 178 aaKnown RBP18.28■□□□□ 0.52
NPHP4-205ENST00000466897 NBPF9Q3BBW0 867 aa18.28■□□□□ 0.52
NPHP4-205ENST00000466897 MCMDC2Q4G0Z9 681 aa18.28■□□□□ 0.52
NPHP4-205ENST00000466897 CDC42EP5Q6NZY7 148 aa18.28■□□□□ 0.52
NPHP4-205ENST00000466897 PUS7LQ9H0K6 701 aaKnown RBP18.28■□□□□ 0.52
NPHP4-205ENST00000466897 AATFQ9NY61 560 aaKnown RBP eCLIP18.28■□□□□ 0.52
NPHP4-205ENST00000466897 PCDHAC2Q9Y5I4 1007 aa18.28■□□□□ 0.52
NPHP4-205ENST00000466897 LAMB1P07942 1786 aa18.27■□□□□ 0.52
NPHP4-205ENST00000466897 COL2A1P02458 1487 aaPredicted RBP18.27■□□□□ 0.52
NPHP4-205ENST00000466897 A0A0D9SFI3 127 aa18.27■□□□□ 0.52
NPHP4-205ENST00000466897 CDC45O75419 566 aa18.27■□□□□ 0.52
NPHP4-205ENST00000466897 NMIQ13287 307 aaPredicted RBP18.27■□□□□ 0.52
NPHP4-205ENST00000466897 SLFNL1Q499Z3 407 aa18.27■□□□□ 0.52
NPHP4-205ENST00000466897 RBM26Q5T8P6 1007 aaKnown RBP18.27■□□□□ 0.52
NPHP4-205ENST00000466897 MIGA1Q8NAN2 632 aa18.27■□□□□ 0.52
NPHP4-205ENST00000466897 ZNF526Q8TF50 670 aaPredicted RBP18.27■□□□□ 0.52
NPHP4-205ENST00000466897 RUFY2Q8WXA3 655 aa18.27■□□□□ 0.52
NPHP4-205ENST00000466897 AIDAQ96BJ3 306 aa18.27■□□□□ 0.52
NPHP4-205ENST00000466897 FAM227BQ96M60 508 aa18.27■□□□□ 0.52
NPHP4-205ENST00000466897 IDI2Q9BXS1 227 aa18.27■□□□□ 0.52
NPHP4-205ENST00000466897 TMOD2Q9NZR1 351 aa18.27■□□□□ 0.52
NPHP4-205ENST00000466897 ZNF70Q9UC06 446 aaPredicted RBP18.27■□□□□ 0.52
NPHP4-205ENST00000466897 RPAP1Q9BWH6 1393 aaPredicted RBP18.27■□□□□ 0.51
NPHP4-205ENST00000466897 BAZ2AQ9UIF9 1905 aaKnown RBP18.27■□□□□ 0.51
NPHP4-205ENST00000466897 MBD4O95243 580 aa18.26■□□□□ 0.51
NPHP4-205ENST00000466897 GNAT2P19087 354 aa18.26■□□□□ 0.51
NPHP4-205ENST00000466897 MFAP1P55081 439 aaKnown RBP18.26■□□□□ 0.51
NPHP4-205ENST00000466897 CASC1Q6TDU7 716 aa18.26■□□□□ 0.51
NPHP4-205ENST00000466897 APOBEC3FQ8IUX4 373 aaKnown RBP18.26■□□□□ 0.51
NPHP4-205ENST00000466897 STRBPQ96SI9 672 aaKnown RBP18.26■□□□□ 0.51
NPHP4-205ENST00000466897 TDRD3Q9H7E2 651 aaKnown RBP18.26■□□□□ 0.51
NPHP4-205ENST00000466897 USP40Q9NVE5 1235 aa18.26■□□□□ 0.51
NPHP4-205ENST00000466897 LAMA4Q16363 1823 aa18.26■□□□□ 0.51
NPHP4-205ENST00000466897 M0R2C6 588 aa18.25■□□□□ 0.51
NPHP4-205ENST00000466897 GPAA1O43292 621 aa18.25■□□□□ 0.51
NPHP4-205ENST00000466897 WDHD1O75717 1129 aaPredicted RBP18.25■□□□□ 0.51
NPHP4-205ENST00000466897 TNFAIP1Q13829 316 aa18.25■□□□□ 0.51
NPHP4-205ENST00000466897 CWC27Q6UX04 472 aaKnown RBP18.25■□□□□ 0.51
NPHP4-205ENST00000466897 FAM83AQ86UY5 434 aa18.25■□□□□ 0.51
NPHP4-205ENST00000466897 LDHDQ86WU2 507 aa18.25■□□□□ 0.51
NPHP4-205ENST00000466897 LCORLQ8N3X6 602 aa18.25■□□□□ 0.51
NPHP4-205ENST00000466897 SH3RF3Q8TEJ3 882 aaPredicted RBP18.25■□□□□ 0.51
NPHP4-205ENST00000466897 CRNKL1Q9BZJ0 848 aaKnown RBP18.25■□□□□ 0.51
NPHP4-205ENST00000466897 C1QTNF8P60827 252 aa18.24■□□□□ 0.51
NPHP4-205ENST00000466897 DYNLL1P63167 89 aaKnown RBP18.24■□□□□ 0.51
NPHP4-205ENST00000466897 TEX11Q8IYF3 940 aa18.24■□□□□ 0.51
NPHP4-205ENST00000466897 SEC62Q99442 399 aaKnown RBP18.24■□□□□ 0.51
NPHP4-205ENST00000466897 GGA3Q9NZ52 723 aa18.24■□□□□ 0.51
NPHP4-205ENST00000466897 PPP2R3BQ9Y5P8 575 aa18.24■□□□□ 0.51
NPHP4-205ENST00000466897 CCDC171Q6TFL3 1326 aa18.23■□□□□ 0.51
NPHP4-205ENST00000466897 TRPM7Q96QT4 1865 aa18.23■□□□□ 0.51
NPHP4-205ENST00000466897 KIF3CO14782 793 aa18.23■□□□□ 0.51
NPHP4-205ENST00000466897 SGSM2O43147 1006 aa18.23■□□□□ 0.51
NPHP4-205ENST00000466897 ENTPD3O75355 529 aa18.23■□□□□ 0.51
NPHP4-205ENST00000466897 EAPPQ56P03 285 aaPredicted RBP18.23■□□□□ 0.51
NPHP4-205ENST00000466897 ANGEL2Q5VTE6 544 aaKnown RBP18.23■□□□□ 0.51
NPHP4-205ENST00000466897 GIMAP6Q6P9H5 292 aa18.23■□□□□ 0.51
NPHP4-205ENST00000466897 ARMT1Q9H993 441 aa18.23■□□□□ 0.51
NPHP4-205ENST00000466897 ATP8A2Q9NTI2 1148 aa18.23■□□□□ 0.51
NPHP4-205ENST00000466897 ASTN2O75129 1339 aaPredicted RBP18.23■□□□□ 0.51
NPHP4-205ENST00000466897 ATRNL1Q5VV63 1379 aa18.22■□□□□ 0.51
NPHP4-205ENST00000466897 SIPA1L1O43166 1804 aa18.22■□□□□ 0.51
NPHP4-205ENST00000466897 CLRN2A0PK11 232 aa18.22■□□□□ 0.51
NPHP4-205ENST00000466897 TNNI2P48788 182 aa18.22■□□□□ 0.51
NPHP4-205ENST00000466897 DCPSQ96C86 337 aaKnown RBP18.22■□□□□ 0.51
NPHP4-205ENST00000466897 MKRN1Q9UHC7 482 aaKnown RBP18.22■□□□□ 0.51
NPHP4-205ENST00000466897 FLT1P17948 1338 aa18.22■□□□□ 0.51
NPHP4-205ENST00000466897 CNTNAP1P78357 1384 aa18.21■□□□□ 0.51
NPHP4-205ENST00000466897 ZNF589Q86UQ0 364 aaPredicted RBP18.21■□□□□ 0.51
NPHP4-205ENST00000466897 FAM151AQ8WW52 585 aa18.21■□□□□ 0.51
NPHP4-205ENST00000466897 ESYT1Q9BSJ8 1104 aa18.21■□□□□ 0.51
NPHP4-205ENST00000466897 VEZTQ9HBM0 779 aa18.21■□□□□ 0.51
NPHP4-205ENST00000466897 FAM198AQ9UFP1 575 aa18.21■□□□□ 0.51
NPHP4-205ENST00000466897 ZMYM6O95789 1325 aa18.21■□□□□ 0.51
NPHP4-205ENST00000466897 MYH8P13535 1937 aa18.2■□□□□ 0.5
NPHP4-205ENST00000466897 PATL2C9JE40 543 aaKnown RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms