RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 ATP6V0A2Q9Y487 856 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 GNA11P29992 359 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 WDR44Q5JSH3 913 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 CCDC114Q96M63 670 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 PAG1Q9NWQ8 432 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 CCDC171Q6TFL3 1326 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 PARP1P09874 1014 aaKnown RBP9.81□□□□□ -0.84
HPS4-209ENST00000466781 KRT5P13647 590 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 HSPA4P34932 840 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 ZBTB16Q05516 673 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 TNPO1Q92973 898 aaKnown RBP9.81□□□□□ -0.84
HPS4-209ENST00000466781 LRRC2Q9BYS8 371 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 RBM28Q9NW13 759 aaKnown RBP9.81□□□□□ -0.84
HPS4-209ENST00000466781 GGA1Q9UJY5 639 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 CTAGE15A4D2H0 777 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 NOL3O60936 208 aaKnown RBP9.81□□□□□ -0.84
HPS4-209ENST00000466781 CTAGE8P0CG41 777 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 ALDH1B1P30837 517 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 CTAGE6Q86UF2 777 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 CTAGE4Q8IX94 777 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 CCDC24Q8N4L8 307 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 PTGS1P23219 599 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 UVSSAQ2YD98 709 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 FNBP1Q96RU3 617 aa9.81□□□□□ -0.84
HPS4-209ENST00000466781 ZSCAN22P10073 491 aaPredicted RBP9.8□□□□□ -0.84
HPS4-209ENST00000466781 IL13P35225 146 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 KRT83P78385 493 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 PRPF31Q8WWY3 499 aaKnown RBP9.8□□□□□ -0.84
HPS4-209ENST00000466781 MRPS27Q92552 414 aaKnown RBP9.8□□□□□ -0.84
HPS4-209ENST00000466781 AGTPBP1Q9UPW5 1226 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 FRMD4BQ9Y2L6 1034 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 TRIM75PA6NK02 468 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 MCM7P33993 719 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 RASA3Q14644 834 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 RAB3GAP1Q15042 981 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 PPP1R7Q15435 360 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 ARHGAP45Q92619 1136 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 PKD2L1Q9P0L9 805 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 CALCOCO1Q9P1Z2 691 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 TRIM37O94972 964 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 ALDH3A1P30838 453 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 DPP8Q6V1X1 898 aaPredicted RBP9.8□□□□□ -0.84
HPS4-209ENST00000466781 NECAB1Q8N987 351 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 ARHGEF10LQ9HCE6 1279 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 IVNS1ABPQ9Y6Y0 642 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 A2ML1A8K2U0 1454 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 CLTCQ00610 1675 aaKnown RBP9.8□□□□□ -0.84
HPS4-209ENST00000466781 OPA1O60313 960 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 HARSP12081 509 aaKnown RBP9.8□□□□□ -0.84
HPS4-209ENST00000466781 SEL1L2Q5TEA6 688 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 FMNL3Q8IVF7 1028 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 MIGA1Q8NAN2 632 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 KIFAP3Q92845 792 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 JAKMIP2Q96AA8 810 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 TESK2Q96S53 571 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 NAP1L3Q99457 506 aaPredicted RBP9.8□□□□□ -0.84
HPS4-209ENST00000466781 BABAM1Q9NWV8 329 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 ARAP3Q8WWN8 1544 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 GTF2F1P35269 517 aaKnown RBP eCLIP9.8□□□□□ -0.84
HPS4-209ENST00000466781 UNC5CLQ8IV45 518 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 LARGE2Q8N3Y3 721 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 KIFC2Q96AC6 838 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 MKRN1Q9UHC7 482 aaKnown RBP9.8□□□□□ -0.84
HPS4-209ENST00000466781 RBM8AQ9Y5S9 174 aaKnown RBP9.8□□□□□ -0.84
HPS4-209ENST00000466781 SBNO2Q9Y2G9 1366 aa9.8□□□□□ -0.84
HPS4-209ENST00000466781 MARCKSP29966 332 aaPredicted RBP9.79□□□□□ -0.84
HPS4-209ENST00000466781 NIM1KQ8IY84 436 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 ANKS4BQ8N8V4 417 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 IL27Q8NEV9 243 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 RNF216Q9NWF9 866 aaPredicted RBP9.79□□□□□ -0.84
HPS4-209ENST00000466781 RTL1A6NKG5 1358 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 STX10O60499 249 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 GABPAQ06546 454 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 DCAF17Q5H9S7 520 aaPredicted RBP9.79□□□□□ -0.84
HPS4-209ENST00000466781 SPOUT1Q5T280 376 aaKnown RBP9.79□□□□□ -0.84
HPS4-209ENST00000466781 CCDC65Q8IXS2 484 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 PFDN4Q9NQP4 134 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 PAXBP1Q9Y5B6 917 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 CCDC160A6NGH7 325 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 E7EVH7 732 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 ZBTB24O43167 697 aaPredicted RBP9.79□□□□□ -0.84
HPS4-209ENST00000466781 PDE8AO60658 829 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 EPB41P11171 864 aaKnown RBP9.79□□□□□ -0.84
HPS4-209ENST00000466781 TFCP2Q12800 502 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 STRN3Q13033 797 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 BIRC3Q13489 604 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 GEN1Q17RS7 908 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 TTC6Q86TZ1 520 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 TRIM6Q9C030 488 aaPredicted RBP9.79□□□□□ -0.84
HPS4-209ENST00000466781 SAP30BPQ9UHR5 308 aaKnown RBP9.79□□□□□ -0.84
HPS4-209ENST00000466781 NOP56O00567 594 aaKnown RBP9.79□□□□□ -0.84
HPS4-209ENST00000466781 UBXN1Q04323 297 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 HSP90AA4PQ58FG1 418 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 CDAN1Q8IWY9 1227 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 LINS1Q8NG48 757 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 HOOK2Q96ED9 719 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 TRIM7Q9C029 511 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 M0QZ92 97 aa9.79□□□□□ -0.84
HPS4-209ENST00000466781 RNF113AO15541 343 aaKnown RBP9.79□□□□□ -0.84
HPS4-209ENST00000466781 DTHD1Q6ZMT9 781 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms