RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 CDC42EP5Q6NZY7 148 aa25.73■■□□□ 1.71
COL6A1-203ENST00000466285 ARHGAP39Q9C0H5 1083 aa25.73■■□□□ 1.71
COL6A1-203ENST00000466285 SUGT1Q9Y2Z0 365 aa25.73■■□□□ 1.71
COL6A1-203ENST00000466285 IRF6O14896 467 aa25.72■■□□□ 1.71
COL6A1-203ENST00000466285 CIAO1O76071 339 aa25.72■■□□□ 1.71
COL6A1-203ENST00000466285 TCP10Q12799 353 aa25.72■■□□□ 1.71
COL6A1-203ENST00000466285 ZFPM1Q8IX07 1006 aa25.72■■□□□ 1.71
COL6A1-203ENST00000466285 MRIQ9BWK5 157 aa25.72■■□□□ 1.71
COL6A1-203ENST00000466285 TMOD2Q9NZR1 351 aa25.72■■□□□ 1.71
COL6A1-203ENST00000466285 FAM198AQ9UFP1 575 aa25.72■■□□□ 1.71
COL6A1-203ENST00000466285 RFX7Q2KHR2 1363 aa25.71■■□□□ 1.71
COL6A1-203ENST00000466285 SLURP2P0DP57 97 aa25.71■■□□□ 1.71
COL6A1-203ENST00000466285 GTF2A2P52657 109 aa25.71■■□□□ 1.71
COL6A1-203ENST00000466285 FKBP1CQ5VVH2 108 aa25.71■■□□□ 1.71
COL6A1-203ENST00000466285 OTUD7BQ6GQQ9 843 aa25.71■■□□□ 1.71
COL6A1-203ENST00000466285 WDR66Q8TBY9 1149 aa25.71■■□□□ 1.71
COL6A1-203ENST00000466285 EFCC1Q9HA90 598 aa25.71■■□□□ 1.71
COL6A1-203ENST00000466285 ATRNL1Q5VV63 1379 aa25.7■■□□□ 1.71
COL6A1-203ENST00000466285 BTBD19C9JJ37 291 aa25.7■■□□□ 1.7
COL6A1-203ENST00000466285 PRPF38BQ5VTL8 546 aaKnown RBP25.7■■□□□ 1.7
COL6A1-203ENST00000466285 PTPRFP10586 1907 aa25.7■■□□□ 1.7
COL6A1-203ENST00000466285 ECM2O94769 699 aaPredicted RBP25.69■■□□□ 1.7
COL6A1-203ENST00000466285 RARSP54136 660 aaKnown RBP25.69■■□□□ 1.7
COL6A1-203ENST00000466285 ERO1BQ86YB8 467 aa25.69■■□□□ 1.7
COL6A1-203ENST00000466285 PTCH2Q9Y6C5 1203 aa25.69■■□□□ 1.7
COL6A1-203ENST00000466285 PHIPQ8WWQ0 1821 aa25.69■■□□□ 1.7
COL6A1-203ENST00000466285 ARMC5Q96C12 935 aa25.68■■□□□ 1.7
COL6A1-203ENST00000466285 CEP126Q9P2H0 1117 aa25.68■■□□□ 1.7
COL6A1-203ENST00000466285 PPIL2Q13356 520 aa25.67■■□□□ 1.7
COL6A1-203ENST00000466285 RASGRF1Q13972 1273 aa25.67■■□□□ 1.7
COL6A1-203ENST00000466285 DOCK1Q14185 1865 aa25.67■■□□□ 1.7
COL6A1-203ENST00000466285 FAM151AQ8WW52 585 aa25.67■■□□□ 1.7
COL6A1-203ENST00000466285 API5Q9BZZ5 524 aaKnown RBP25.67■■□□□ 1.7
COL6A1-203ENST00000466285 COPRSQ9NQ92 184 aa25.67■■□□□ 1.7
COL6A1-203ENST00000466285 SALL1Q9NSC2 1324 aa25.66■■□□□ 1.7
COL6A1-203ENST00000466285 CTGFP29279 349 aa25.66■■□□□ 1.7
COL6A1-203ENST00000466285 MOGSQ13724 837 aa25.66■■□□□ 1.7
COL6A1-203ENST00000466285 CCDC102BQ68D86 513 aa25.66■■□□□ 1.7
COL6A1-203ENST00000466285 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.66■■□□□ 1.7
COL6A1-203ENST00000466285 ZNF341Q9BYN7 854 aa25.66■■□□□ 1.7
COL6A1-203ENST00000466285 ZFYVE28Q9HCC9 887 aa25.66■■□□□ 1.7
COL6A1-203ENST00000466285 LDHBP07195 334 aaKnown RBP25.65■■□□□ 1.7
COL6A1-203ENST00000466285 IL15P40933 162 aaPredicted RBP25.65■■□□□ 1.7
COL6A1-203ENST00000466285 FBXO3Q9UK99 471 aa25.65■■□□□ 1.7
COL6A1-203ENST00000466285 ADGRA2Q96PE1 1338 aa25.64■■□□□ 1.7
COL6A1-203ENST00000466285 CT47B1P0C2W7 299 aaPredicted RBP25.64■■□□□ 1.7
COL6A1-203ENST00000466285 CETPP11597 493 aa25.64■■□□□ 1.7
COL6A1-203ENST00000466285 EN2P19622 333 aaPredicted RBP25.64■■□□□ 1.7
COL6A1-203ENST00000466285 TIMM10P62072 90 aa25.64■■□□□ 1.7
COL6A1-203ENST00000466285 SH3BP5LQ7L8J4 393 aa25.64■■□□□ 1.7
COL6A1-203ENST00000466285 ZNF384Q8TF68 577 aa25.64■■□□□ 1.7
COL6A1-203ENST00000466285 USP40Q9NVE5 1235 aa25.64■■□□□ 1.7
COL6A1-203ENST00000466285 ZNF112Q9UJU3 913 aa25.64■■□□□ 1.7
COL6A1-203ENST00000466285 TFCP2Q12800 502 aa25.63■■□□□ 1.69
COL6A1-203ENST00000466285 SNAPC2Q13487 334 aa25.63■■□□□ 1.69
COL6A1-203ENST00000466285 DCAF15Q66K64 600 aa25.63■■□□□ 1.69
COL6A1-203ENST00000466285 PI16Q6UXB8 463 aa25.63■■□□□ 1.69
COL6A1-203ENST00000466285 ZNF333Q96JL9 665 aa25.63■■□□□ 1.69
COL6A1-203ENST00000466285 FRMD4AQ9P2Q2 1039 aaPredicted RBP25.63■■□□□ 1.69
COL6A1-203ENST00000466285 MGAMO43451 1857 aa25.63■■□□□ 1.69
COL6A1-203ENST00000466285 GAKO14976 1311 aa25.63■■□□□ 1.69
COL6A1-203ENST00000466285 TLR2O60603 784 aa25.62■■□□□ 1.69
COL6A1-203ENST00000466285 MYCP01106 439 aaPredicted RBP25.62■■□□□ 1.69
COL6A1-203ENST00000466285 RGS3P49796 1198 aa25.62■■□□□ 1.69
COL6A1-203ENST00000466285 INTS3Q68E01 1043 aaKnown RBP25.62■■□□□ 1.69
COL6A1-203ENST00000466285 DDX4Q9NQI0 724 aaKnown RBP25.62■■□□□ 1.69
COL6A1-203ENST00000466285 DENND2AQ9ULE3 1009 aa25.62■■□□□ 1.69
COL6A1-203ENST00000466285 A0A1B0GUL7 405 aa25.61■■□□□ 1.69
COL6A1-203ENST00000466285 TRIM27P14373 513 aa25.61■■□□□ 1.69
COL6A1-203ENST00000466285 CPA4Q9UI42 421 aa25.61■■□□□ 1.69
COL6A1-203ENST00000466285 MYO5AQ9Y4I1 1855 aaKnown RBP25.61■■□□□ 1.69
COL6A1-203ENST00000466285 SIPA1L1O43166 1804 aa25.6■■□□□ 1.69
COL6A1-203ENST00000466285 ATAD5Q96QE3 1844 aa25.6■■□□□ 1.69
COL6A1-203ENST00000466285 SRGAP3O43295 1099 aa25.6■■□□□ 1.69
COL6A1-203ENST00000466285 LACTBP83111 547 aaPredicted RBP25.6■■□□□ 1.69
COL6A1-203ENST00000466285 PPATQ06203 517 aa25.6■■□□□ 1.69
COL6A1-203ENST00000466285 SH3TC2Q8TF17 1288 aa25.6■■□□□ 1.69
COL6A1-203ENST00000466285 GNL3LQ9NVN8 582 aaKnown RBP25.6■■□□□ 1.69
COL6A1-203ENST00000466285 KCNH4Q9UQ05 1017 aa25.6■■□□□ 1.69
COL6A1-203ENST00000466285 SEMA3EO15041 775 aa25.59■■□□□ 1.69
COL6A1-203ENST00000466285 BCAR3O75815 825 aa25.59■■□□□ 1.69
COL6A1-203ENST00000466285 NOL9Q5SY16 702 aaKnown RBP25.59■■□□□ 1.69
COL6A1-203ENST00000466285 XAGE2Q96GT9 111 aa25.59■■□□□ 1.69
COL6A1-203ENST00000466285 CDK5RAP2Q96SN8 1893 aa25.59■■□□□ 1.69
COL6A1-203ENST00000466285 MAST2Q6P0Q8 1798 aa25.59■■□□□ 1.69
COL6A1-203ENST00000466285 DDTLA6NHG4 134 aaPredicted RBP25.58■■□□□ 1.69
COL6A1-203ENST00000466285 PHF20L1A8MW92 1017 aa25.58■■□□□ 1.69
COL6A1-203ENST00000466285 WDHD1O75717 1129 aaPredicted RBP25.58■■□□□ 1.69
COL6A1-203ENST00000466285 MTX1Q13505 466 aa25.58■■□□□ 1.69
COL6A1-203ENST00000466285 CCDC84Q86UT8 332 aaPredicted RBP25.58■■□□□ 1.69
COL6A1-203ENST00000466285 HOOK2Q96ED9 719 aa25.58■■□□□ 1.69
COL6A1-203ENST00000466285 PNMA6EA0A0J9YXQ4 647 aa25.57■■□□□ 1.68
COL6A1-203ENST00000466285 CCER2I3L3R5 266 aa25.57■■□□□ 1.68
COL6A1-203ENST00000466285 SLC9C1Q4G0N8 1177 aa25.57■■□□□ 1.68
COL6A1-203ENST00000466285 C17orf99Q6UX52 265 aa25.57■■□□□ 1.68
COL6A1-203ENST00000466285 ABCF2Q9UG63 623 aa25.57■■□□□ 1.68
COL6A1-203ENST00000466285 PDHXO00330 501 aa25.56■■□□□ 1.68
COL6A1-203ENST00000466285 BTDP43251 543 aa25.56■■□□□ 1.68
COL6A1-203ENST00000466285 GPAT2Q6NUI2 795 aa25.56■■□□□ 1.68
COL6A1-203ENST00000466285 ANKRD23Q86SG2 305 aa25.56■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms