RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 CYP2C8P10632 490 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 SLC5A1P13866 664 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 IL9P15248 144 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 AVPR2P30518 371 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 PPIL2Q13356 520 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 COL9A3Q14050 684 aaPredicted RBP3.59□□□□□ -1.83
USP40-211ENST00000464956 RASA3Q14644 834 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 PARP10Q53GL7 1025 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 HERC4Q5GLZ8 1057 aaPredicted RBP3.59□□□□□ -1.83
USP40-211ENST00000464956 SLC10A5Q5PT55 438 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 MAP3K21Q5TCX8 1036 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 LHX8Q68G74 356 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 SLC39A5Q6ZMH5 540 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 PRR23BQ6ZRT6 265 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 TRIM67Q6ZTA4 783 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 SH3RF1Q7Z6J0 888 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 FRMD5Q7Z6J6 570 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 TRMT44Q8IYL2 757 aaKnown RBP3.59□□□□□ -1.83
USP40-211ENST00000464956 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.59□□□□□ -1.83
USP40-211ENST00000464956 SMCR8Q8TEV9 937 aaPredicted RBP3.59□□□□□ -1.83
USP40-211ENST00000464956 HNRNPABQ99729 332 aaKnown RBP3.59□□□□□ -1.83
USP40-211ENST00000464956 UTP14AQ9BVJ6 771 aaKnown RBP3.59□□□□□ -1.83
USP40-211ENST00000464956 UBE2ZQ9H832 354 aaPredicted RBP3.59□□□□□ -1.83
USP40-211ENST00000464956 VEZTQ9HBM0 779 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 MUTYHQ9UIF7 546 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 GGA1Q9UJY5 639 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 ZNF536O15090 1300 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 COL4A6Q14031 1691 aa3.59□□□□□ -1.84
USP40-211ENST00000464956 CLRN2A0PK11 232 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 GRXCR2A6NFK2 248 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 KBTBD13C9JR72 458 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 MSCO60682 206 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 ADRB1P08588 477 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 CLTBP09497 229 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 ZKSCAN1P17029 563 aaPredicted RBP3.58□□□□□ -1.84
USP40-211ENST00000464956 KCNA5P22460 613 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 ZP2Q05996 745 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 PPATQ06203 517 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 TEFQ10587 303 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 PPIGQ13427 754 aaKnown RBP eCLIP3.58□□□□□ -1.84
USP40-211ENST00000464956 PSRC1Q6PGN9 363 aaPredicted RBP3.58□□□□□ -1.84
USP40-211ENST00000464956 KIF6Q6ZMV9 814 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 KIAA0825Q8IV33 1275 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 ADHFE1Q8IWW8 467 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.58□□□□□ -1.84
USP40-211ENST00000464956 KCNG4Q8TDN1 519 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 TRIB2Q92519 343 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 ZBED3Q96IU2 234 aaPredicted RBP3.58□□□□□ -1.84
USP40-211ENST00000464956 POP1Q99575 1024 aaKnown RBP3.58□□□□□ -1.84
USP40-211ENST00000464956 HINFPQ9BQA5 517 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.58□□□□□ -1.84
USP40-211ENST00000464956 ALG13Q9NP73 1137 aaKnown RBP3.58□□□□□ -1.84
USP40-211ENST00000464956 BSDC1Q9NW68 430 aaPredicted RBP3.58□□□□□ -1.84
USP40-211ENST00000464956 ANKIB1Q9P2G1 1089 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 YBX2Q9Y2T7 364 aaKnown RBP3.58□□□□□ -1.84
USP40-211ENST00000464956 USP16Q9Y5T5 823 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 UBN2Q6ZU65 1347 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 SH3TC1Q8TE82 1336 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 ZNF521Q96K83 1311 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 RPAP1Q9BWH6 1393 aaPredicted RBP3.58□□□□□ -1.84
USP40-211ENST00000464956 ALPK3Q96L96 1907 aa3.58□□□□□ -1.84
USP40-211ENST00000464956 LRRC37A2A6NM11 1700 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 CYSRT1A8MQ03 144 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 RFXAPO00287 272 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 KIAA0355O15063 1070 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 ROCK2O75116 1388 aaKnown RBP3.57□□□□□ -1.84
USP40-211ENST00000464956 KRT38O76015 456 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 XRCC5P13010 732 aaKnown RBP3.57□□□□□ -1.84
USP40-211ENST00000464956 VCPP55072 806 aaKnown RBP3.57□□□□□ -1.84
USP40-211ENST00000464956 CACNB2Q08289 660 aaPredicted RBP3.57□□□□□ -1.84
USP40-211ENST00000464956 MAP2K5Q13163 448 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 SNX17Q15036 470 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 RSPO4Q2I0M5 234 aaPredicted RBP3.57□□□□□ -1.84
USP40-211ENST00000464956 DDX60LQ5H9U9 1706 aaKnown RBP3.57□□□□□ -1.84
USP40-211ENST00000464956 AMER1Q5JTC6 1135 aaPredicted RBP3.57□□□□□ -1.84
USP40-211ENST00000464956 TMEM240Q5SV17 173 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 DACT2Q5SW24 774 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 RASIP1Q5U651 963 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 STRIP1Q5VSL9 837 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 C1orf53Q5VUE5 145 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 KRT40Q6A162 431 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 LRSAM1Q6UWE0 723 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 MAP3K15Q6ZN16 1313 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 ANKRD13CQ8N6S4 541 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 ARRDC4Q8NCT1 418 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 LPAR1Q92633 364 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 HOOK2Q96ED9 719 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 WRNIP1Q96S55 665 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 DUOX1Q9NRD9 1551 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 TMEM39AQ9NV64 488 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 PODXL2Q9NZ53 605 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 ANKFY1Q9P2R3 1169 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 TCF20Q9UGU0 1960 aaKnown RBP3.57□□□□□ -1.84
USP40-211ENST00000464956 KMT2BQ9UMN6 2715 aaPredicted RBP3.57□□□□□ -1.84
USP40-211ENST00000464956 PCDHA11Q9Y5I1 949 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 SNCAIPQ9Y6H5 919 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 CFAP54Q96N23 3096 aa3.57□□□□□ -1.84
USP40-211ENST00000464956 ZSWIM8A7E2V4 1837 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 EPG5Q9HCE0 2579 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms