RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	TEKT1	Q969V4	418 aa		13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	STK24	Q9Y6E0	443 aa		13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	CARMIL3	Q8ND23	1372 aa		13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	SPTLC2	O15270	562 aa		13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	SYK	P43405	635 aa		13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	CCDC129	Q6ZRS4	1044 aa		13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	ANKRD26	Q9UPS8	1709 aa		13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	PICALM	Q13492	652 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	C2CD5	Q86YS7	1000 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	LARP6	Q9BRS8	491 aa	Known RBP	13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	USP42	Q9H9J4	1324 aa	Known RBP	13.49	□□□□□ -0.25
RBM39-223	ENST00000463004		A0A0D9SFI3	127 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004		B4E1Z4	1266 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004		F8W031	263 aa	Predicted RBP	13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	TRIM37	O94972	964 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	NAPA	P54920	295 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	EIF6	P56537	245 aa	Known RBP	13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	SUSD4	Q5VX71	490 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	LRSAM1	Q6UWE0	723 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	NIM1K	Q8IY84	436 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	CCDC144CP	Q8IYA2	1237 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	GOLGA6L1	Q8N7Z2	621 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	NPR1	P16066	1061 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	FAM114A1	Q8IWE2	563 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	LARGE2	Q8N3Y3	721 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	GPS2	Q13227	327 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	IFNL3	Q8IZI9	196 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	ARHGEF10L	Q9HCE6	1279 aa		13.49	□□□□□ -0.25
RBM39-223	ENST00000463004	SSB	P05455	408 aa	Known RBP eCLIP	13.48	□□□□□ -0.25
RBM39-223	ENST00000463004	PPARA	Q07869	468 aa		13.48	□□□□□ -0.25
RBM39-223	ENST00000463004	PI4K2B	Q8TCG2	481 aa		13.48	□□□□□ -0.25
RBM39-223	ENST00000463004	NOC3L	Q8WTT2	800 aa	Known RBP	13.48	□□□□□ -0.25
RBM39-223	ENST00000463004	CNTNAP4	Q9C0A0	1308 aa		13.48	□□□□□ -0.25
RBM39-223	ENST00000463004	PPP1R2	P41236	205 aa		13.48	□□□□□ -0.25
RBM39-223	ENST00000463004	EIF5	P55010	431 aa	Known RBP	13.48	□□□□□ -0.25
RBM39-223	ENST00000463004	ERFE	Q4G0M1	354 aa		13.48	□□□□□ -0.25
RBM39-223	ENST00000463004	MTA3	Q9BTC8	594 aa		13.48	□□□□□ -0.25
RBM39-223	ENST00000463004	MED23	Q9ULK4	1368 aa		13.48	□□□□□ -0.25
RBM39-223	ENST00000463004	ADD2	P35612	726 aa		13.48	□□□□□ -0.25
RBM39-223	ENST00000463004	USP48	Q86UV5	1035 aa		13.48	□□□□□ -0.25
RBM39-223	ENST00000463004	NBPF26	B4DH59	902 aa		13.47	□□□□□ -0.25
RBM39-223	ENST00000463004	PPEF1	O14829	653 aa	Predicted RBP	13.47	□□□□□ -0.25
RBM39-223	ENST00000463004	LMOD1	P29536	600 aa	Predicted RBP	13.47	□□□□□ -0.25
RBM39-223	ENST00000463004	GSDMD	P57764	484 aa		13.47	□□□□□ -0.25
RBM39-223	ENST00000463004	SPAG1	Q07617	926 aa		13.47	□□□□□ -0.25
RBM39-223	ENST00000463004	TNFAIP1	Q13829	316 aa		13.47	□□□□□ -0.25
RBM39-223	ENST00000463004	MFSD14B	Q5SR56	506 aa		13.47	□□□□□ -0.25
RBM39-223	ENST00000463004	NBPF10	Q6P3W6	841 aa	Known RBP	13.47	□□□□□ -0.25
RBM39-223	ENST00000463004	NBPF15	Q8N660	670 aa		13.47	□□□□□ -0.25
RBM39-223	ENST00000463004	PUS3	Q9BZE2	481 aa	Known RBP	13.47	□□□□□ -0.25
RBM39-223	ENST00000463004	PFKFB2	O60825	505 aa		13.47	□□□□□ -0.25
RBM39-223	ENST00000463004	GTF3C6	Q969F1	213 aa		13.47	□□□□□ -0.25
RBM39-223	ENST00000463004	PHKA1	P46020	1223 aa		13.47	□□□□□ -0.25
RBM39-223	ENST00000463004	GIMAP6	Q6P9H5	292 aa		13.47	□□□□□ -0.25
RBM39-223	ENST00000463004	HEATR3	Q7Z4Q2	680 aa		13.47	□□□□□ -0.25
RBM39-223	ENST00000463004	PPP4R3A	Q6IN85	833 aa		13.46	□□□□□ -0.25
RBM39-223	ENST00000463004	ZHX3	Q9H4I2	956 aa		13.46	□□□□□ -0.25
RBM39-223	ENST00000463004	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.46	□□□□□ -0.25
RBM39-223	ENST00000463004		A0A0U1RQG5	324 aa	Predicted RBP	13.46	□□□□□ -0.25
RBM39-223	ENST00000463004	BCAM	P50895	628 aa		13.46	□□□□□ -0.25
RBM39-223	ENST00000463004	FKBP15	Q5T1M5	1219 aa		13.46	□□□□□ -0.25
RBM39-223	ENST00000463004	ZNF397	Q8NF99	534 aa	Predicted RBP	13.46	□□□□□ -0.25
RBM39-223	ENST00000463004	VAT1L	Q9HCJ6	419 aa		13.46	□□□□□ -0.25
RBM39-223	ENST00000463004	SYCP1	Q15431	976 aa		13.46	□□□□□ -0.26
RBM39-223	ENST00000463004	GALNT17	Q6IS24	598 aa		13.46	□□□□□ -0.26
RBM39-223	ENST00000463004	CCDC17	Q96LX7	622 aa		13.46	□□□□□ -0.26
RBM39-223	ENST00000463004	DDAH1	O94760	285 aa		13.46	□□□□□ -0.26
RBM39-223	ENST00000463004	DNM1	Q05193	864 aa	Known RBP	13.46	□□□□□ -0.26
RBM39-223	ENST00000463004	ARGLU1	Q9NWB6	273 aa	Predicted RBP	13.46	□□□□□ -0.26
RBM39-223	ENST00000463004	USP25	Q9UHP3	1055 aa		13.46	□□□□□ -0.26
RBM39-223	ENST00000463004	CNPY2	Q9Y2B0	182 aa		13.46	□□□□□ -0.26
RBM39-223	ENST00000463004	GYG1	P46976	350 aa		13.45	□□□□□ -0.26
RBM39-223	ENST00000463004	MNS1	Q8NEH6	495 aa		13.45	□□□□□ -0.26
RBM39-223	ENST00000463004	ZNF165	P49910	485 aa		13.45	□□□□□ -0.26
RBM39-223	ENST00000463004	TTLL12	Q14166	644 aa	Predicted RBP	13.45	□□□□□ -0.26
RBM39-223	ENST00000463004	FMN2	Q9NZ56	1722 aa		13.45	□□□□□ -0.26
RBM39-223	ENST00000463004	PPIP5K2	O43314	1243 aa		13.45	□□□□□ -0.26
RBM39-223	ENST00000463004	HLF	Q16534	295 aa		13.45	□□□□□ -0.26
RBM39-223	ENST00000463004	CAMK4	Q16566	473 aa		13.45	□□□□□ -0.26
RBM39-223	ENST00000463004	ZSCAN23	Q3MJ62	389 aa		13.45	□□□□□ -0.26
RBM39-223	ENST00000463004	RBM26	Q5T8P6	1007 aa	Known RBP	13.45	□□□□□ -0.26
RBM39-223	ENST00000463004	COA1	Q9GZY4	146 aa		13.45	□□□□□ -0.26
RBM39-223	ENST00000463004	SWAP70	Q9UH65	585 aa		13.45	□□□□□ -0.26
RBM39-223	ENST00000463004	BRD1	O95696	1058 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	FGA	P02671	866 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	PTH1R	Q03431	593 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	DLGAP5	Q15398	846 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	CFAP100	Q494V2	611 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	ZNF34	Q8IZ26	560 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	KRI1	Q8N9T8	703 aa	Known RBP	13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	DNAI2	Q9GZS0	605 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	VEZT	Q9HBM0	779 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	WDR19	Q8NEZ3	1342 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	SMARCC2	Q8TAQ2	1214 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	FAM200A	Q8TCP9	573 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	MON2	Q7Z3U7	1717 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	SPDYE3	A6NKU9	549 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	YEATS4	O95619	227 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	MASTL	Q96GX5	879 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	ZNF512B	Q96KM6	892 aa	Predicted RBP	13.44	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms