RNA–Protein interactions for RNA: ENST00000462730.5

HDAC6-213, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-213ENST00000462730 NAP1L2Q9ULW6 460 aaPredicted RBP17.07■□□□□ 0.32
HDAC6-213ENST00000462730 SLC4A4Q9Y6R1 1079 aa17.07■□□□□ 0.32
HDAC6-213ENST00000462730 GSG1L2A8MUP6 293 aa17.06■□□□□ 0.32
HDAC6-213ENST00000462730 PRKAB2O43741 272 aa17.06■□□□□ 0.32
HDAC6-213ENST00000462730 JAK2O60674 1132 aa17.06■□□□□ 0.32
HDAC6-213ENST00000462730 PDCP20941 246 aa17.06■□□□□ 0.32
HDAC6-213ENST00000462730 LARP1BQ659C4 914 aaKnown RBP17.06■□□□□ 0.32
HDAC6-213ENST00000462730 OLFM4Q6UX06 510 aa17.06■□□□□ 0.32
HDAC6-213ENST00000462730 TDRD7Q8NHU6 1098 aaKnown RBP17.06■□□□□ 0.32
HDAC6-213ENST00000462730 C6orf229H3BNL8 230 aa17.06■□□□□ 0.32
HDAC6-213ENST00000462730 PRDX5P30044 214 aa17.06■□□□□ 0.32
HDAC6-213ENST00000462730 ANTXR2P58335 489 aa17.06■□□□□ 0.32
HDAC6-213ENST00000462730 TRDNQ13061 729 aa17.06■□□□□ 0.32
HDAC6-213ENST00000462730 CCDC125Q86Z20 511 aa17.06■□□□□ 0.32
HDAC6-213ENST00000462730 FBXL16Q8N461 479 aa17.06■□□□□ 0.32
HDAC6-213ENST00000462730 ZNF384Q8TF68 577 aa17.06■□□□□ 0.32
HDAC6-213ENST00000462730 GRPEL1Q9HAV7 217 aa17.06■□□□□ 0.32
HDAC6-213ENST00000462730 GPHNQ9NQX3 736 aaPredicted RBP17.06■□□□□ 0.32
HDAC6-213ENST00000462730 KIAA1551Q9HCM1 1747 aa17.05■□□□□ 0.32
HDAC6-213ENST00000462730 MAGEB6P1A0A0J9YX57 407 aa17.05■□□□□ 0.32
HDAC6-213ENST00000462730 H0YIN7 160 aa17.05■□□□□ 0.32
HDAC6-213ENST00000462730 NAA16Q6N069 864 aaPredicted RBP17.05■□□□□ 0.32
HDAC6-213ENST00000462730 NSUN4Q96CB9 384 aaKnown RBP17.05■□□□□ 0.32
HDAC6-213ENST00000462730 NACAP1Q9BZK3 213 aa17.05■□□□□ 0.32
HDAC6-213ENST00000462730 WDR19Q8NEZ3 1342 aa17.05■□□□□ 0.32
HDAC6-213ENST00000462730 C10orf71Q711Q0 1435 aa17.05■□□□□ 0.32
HDAC6-213ENST00000462730 NCLP19338 710 aaKnown RBP17.04■□□□□ 0.32
HDAC6-213ENST00000462730 CHRNA5P30532 468 aa17.04■□□□□ 0.32
HDAC6-213ENST00000462730 TDO2P48775 406 aa17.04■□□□□ 0.32
HDAC6-213ENST00000462730 MECOMQ03112 1051 aa17.04■□□□□ 0.32
HDAC6-213ENST00000462730 STYK1Q6J9G0 422 aa17.04■□□□□ 0.32
HDAC6-213ENST00000462730 ZNF274Q96GC6 653 aaPredicted RBP17.04■□□□□ 0.32
HDAC6-213ENST00000462730 LLPHQ9BRT6 129 aaKnown RBP17.04■□□□□ 0.32
HDAC6-213ENST00000462730 CD209Q9NNX6 404 aa17.04■□□□□ 0.32
HDAC6-213ENST00000462730 SALL1Q9NSC2 1324 aa17.04■□□□□ 0.32
HDAC6-213ENST00000462730 TIAM2Q8IVF5 1701 aa17.04■□□□□ 0.32
HDAC6-213ENST00000462730 SLX4Q8IY92 1834 aa17.04■□□□□ 0.32
HDAC6-213ENST00000462730 PDIA3P30101 505 aaKnown RBP17.04■□□□□ 0.32
HDAC6-213ENST00000462730 CCT2P78371 535 aaKnown RBP17.04■□□□□ 0.32
HDAC6-213ENST00000462730 ATP6V1DQ9Y5K8 247 aa17.04■□□□□ 0.32
HDAC6-213ENST00000462730 NEDD4P46934 1319 aa17.03■□□□□ 0.32
HDAC6-213ENST00000462730 DLEC1Q9Y238 1755 aa17.03■□□□□ 0.32
HDAC6-213ENST00000462730 PDIA4P13667 645 aaKnown RBP17.03■□□□□ 0.32
HDAC6-213ENST00000462730 IL1R1P14778 569 aa17.03■□□□□ 0.32
HDAC6-213ENST00000462730 CTDSPL2Q05D32 466 aa17.03■□□□□ 0.32
HDAC6-213ENST00000462730 MPNDQ8N594 471 aa17.03■□□□□ 0.32
HDAC6-213ENST00000462730 WDR66Q8TBY9 1149 aa17.03■□□□□ 0.32
HDAC6-213ENST00000462730 EVCP57679 992 aa17.02■□□□□ 0.32
HDAC6-213ENST00000462730 DPP8Q6V1X1 898 aaPredicted RBP17.02■□□□□ 0.32
HDAC6-213ENST00000462730 CYB5R4Q7L1T6 521 aa17.02■□□□□ 0.32
HDAC6-213ENST00000462730 CDC37L1Q7L3B6 337 aa17.02■□□□□ 0.32
HDAC6-213ENST00000462730 NSUN7Q8NE18 718 aaKnown RBP17.02■□□□□ 0.32
HDAC6-213ENST00000462730 SMARCC2Q8TAQ2 1214 aa17.02■□□□□ 0.32
HDAC6-213ENST00000462730 GPT2Q8TD30 523 aa17.02■□□□□ 0.32
HDAC6-213ENST00000462730 SLC16A10Q8TF71 515 aa17.02■□□□□ 0.32
HDAC6-213ENST00000462730 DDX11Q96FC9 970 aa17.02■□□□□ 0.32
HDAC6-213ENST00000462730 RIOK1Q9BRS2 568 aaKnown RBP17.02■□□□□ 0.32
HDAC6-213ENST00000462730 TMX4Q9H1E5 349 aaPredicted RBP17.02■□□□□ 0.32
HDAC6-213ENST00000462730 GDPD2Q9HCC8 539 aa17.02■□□□□ 0.32
HDAC6-213ENST00000462730 NCOA5Q9HCD5 579 aaKnown RBP17.02■□□□□ 0.32
HDAC6-213ENST00000462730 KLF18A0A0U1RQI7 1052 aa17.02■□□□□ 0.31
HDAC6-213ENST00000462730 B4E1Z4 1266 aa17.02■□□□□ 0.31
HDAC6-213ENST00000462730 DYNLL1P63167 89 aaKnown RBP17.02■□□□□ 0.31
HDAC6-213ENST00000462730 NKX2-3Q8TAU0 364 aa17.02■□□□□ 0.31
HDAC6-213ENST00000462730 CNPY2Q9Y2B0 182 aa17.02■□□□□ 0.31
HDAC6-213ENST00000462730 CHD4Q14839 1912 aa17.01■□□□□ 0.31
HDAC6-213ENST00000462730 PTPDC1A2A3K4 754 aa17.01■□□□□ 0.31
HDAC6-213ENST00000462730 GOLGA8BA8MQT2 603 aa17.01■□□□□ 0.31
HDAC6-213ENST00000462730 CTDNEP1O95476 244 aa17.01■□□□□ 0.31
HDAC6-213ENST00000462730 SPTY2D1Q68D10 685 aaPredicted RBP17.01■□□□□ 0.31
HDAC6-213ENST00000462730 ILDR1Q86SU0 546 aaPredicted RBP17.01■□□□□ 0.31
HDAC6-213ENST00000462730 DZIP1Q86YF9 867 aaKnown RBP17.01■□□□□ 0.31
HDAC6-213ENST00000462730 GOLGB1Q14789 3259 aaKnown RBP17.01■□□□□ 0.31
HDAC6-213ENST00000462730 RIMBP2O15034 1052 aa17■□□□□ 0.31
HDAC6-213ENST00000462730 CLCN1P35523 988 aa17■□□□□ 0.31
HDAC6-213ENST00000462730 USP48Q86UV5 1035 aa17■□□□□ 0.31
HDAC6-213ENST00000462730 FAM184AQ8NB25 1140 aa17■□□□□ 0.31
HDAC6-213ENST00000462730 SDR42E1Q8WUS8 393 aa17■□□□□ 0.31
HDAC6-213ENST00000462730 CHMP4CQ96CF2 233 aa17■□□□□ 0.31
HDAC6-213ENST00000462730 INCENPQ9NQS7 918 aa17■□□□□ 0.31
HDAC6-213ENST00000462730 TACC3Q9Y6A5 838 aa17■□□□□ 0.31
HDAC6-213ENST00000462730 SH2B2O14492 632 aaPredicted RBP17■□□□□ 0.31
HDAC6-213ENST00000462730 LDHBP07195 334 aaKnown RBP17■□□□□ 0.31
HDAC6-213ENST00000462730 HMGN5P82970 282 aaKnown RBP17■□□□□ 0.31
HDAC6-213ENST00000462730 AKNAD1Q5T1N1 836 aa17■□□□□ 0.31
HDAC6-213ENST00000462730 CAVIN1Q6NZI2 390 aaKnown RBP17■□□□□ 0.31
HDAC6-213ENST00000462730 TMEM87AQ8NBN3 555 aa17■□□□□ 0.31
HDAC6-213ENST00000462730 CNKSR1Q969H4 720 aa17■□□□□ 0.31
HDAC6-213ENST00000462730 MBD3O95983 291 aa16.99■□□□□ 0.31
HDAC6-213ENST00000462730 GRIK5Q16478 980 aa16.99■□□□□ 0.31
HDAC6-213ENST00000462730 FERMT3Q86UX7 667 aa16.99■□□□□ 0.31
HDAC6-213ENST00000462730 STAG1Q8WVM7 1258 aa16.99■□□□□ 0.31
HDAC6-213ENST00000462730 CNNM2Q9H8M5 875 aa16.99■□□□□ 0.31
HDAC6-213ENST00000462730 AATFQ9NY61 560 aaKnown RBP eCLIP16.99■□□□□ 0.31
HDAC6-213ENST00000462730 ANGEL1Q9UNK9 670 aaKnown RBP16.99■□□□□ 0.31
HDAC6-213ENST00000462730 KIF13BQ9NQT8 1826 aa16.99■□□□□ 0.31
HDAC6-213ENST00000462730 DNM1Q05193 864 aaKnown RBP16.98■□□□□ 0.31
HDAC6-213ENST00000462730 TMED8Q6PL24 325 aaPredicted RBP16.98■□□□□ 0.31
HDAC6-213ENST00000462730 MFSD6Q6ZSS7 791 aa16.98■□□□□ 0.31
HDAC6-213ENST00000462730 RAB11FIP4Q86YS3 637 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms