RNA–Protein interactions for RNA: ENST00000461115.5

IFT88-204, Transcript of intraflagellar transport 88, humanhuman

TSL 2

Gene IFT88, Length 1,440 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-204ENST00000461115 IFNL3Q8IZI9 196 aa12.85□□□□□ -0.35
IFT88-204ENST00000461115 MAGEB6Q8N7X4 407 aa12.85□□□□□ -0.35
IFT88-204ENST00000461115 NECAB1Q8N987 351 aa12.85□□□□□ -0.35
IFT88-204ENST00000461115 AIDAQ96BJ3 306 aa12.85□□□□□ -0.35
IFT88-204ENST00000461115 LARP6Q9BRS8 491 aaKnown RBP12.85□□□□□ -0.35
IFT88-204ENST00000461115 EPB41L4AQ9HCS5 686 aaPredicted RBP12.85□□□□□ -0.35
IFT88-204ENST00000461115 ATP6V1DQ9Y5K8 247 aa12.85□□□□□ -0.35
IFT88-204ENST00000461115 MYH15Q9Y2K3 1946 aa12.85□□□□□ -0.35
IFT88-204ENST00000461115 WTIPA6NIX2 430 aaPredicted RBP12.84□□□□□ -0.35
IFT88-204ENST00000461115 ANTXR2P58335 489 aa12.84□□□□□ -0.35
IFT88-204ENST00000461115 DDR1Q08345 913 aa12.84□□□□□ -0.35
IFT88-204ENST00000461115 MCTP1Q6DN14 999 aa12.84□□□□□ -0.35
IFT88-204ENST00000461115 FLAD1Q8NFF5 587 aa12.84□□□□□ -0.35
IFT88-204ENST00000461115 BRF1Q92994 677 aa12.84□□□□□ -0.35
IFT88-204ENST00000461115 CRAMP1Q96RY5 1269 aa12.84□□□□□ -0.35
IFT88-204ENST00000461115 PODXL2Q9NZ53 605 aa12.84□□□□□ -0.35
IFT88-204ENST00000461115 BBOX1O75936 387 aa12.83□□□□□ -0.36
IFT88-204ENST00000461115 MBD4O95243 580 aa12.83□□□□□ -0.36
IFT88-204ENST00000461115 PDIA3P30101 505 aaKnown RBP12.83□□□□□ -0.36
IFT88-204ENST00000461115 HIBADHP31937 336 aaKnown RBP12.83□□□□□ -0.36
IFT88-204ENST00000461115 IRX5P78411 483 aaPredicted RBP12.83□□□□□ -0.36
IFT88-204ENST00000461115 ST5P78524 1137 aa12.83□□□□□ -0.36
IFT88-204ENST00000461115 SCRN1Q12765 414 aa12.83□□□□□ -0.36
IFT88-204ENST00000461115 GIMAP6Q6P9H5 292 aa12.83□□□□□ -0.36
IFT88-204ENST00000461115 TMC4Q7Z404 712 aa12.83□□□□□ -0.36
IFT88-204ENST00000461115 ZNF384Q8TF68 577 aa12.83□□□□□ -0.36
IFT88-204ENST00000461115 RIOK1Q9BRS2 568 aaKnown RBP12.83□□□□□ -0.36
IFT88-204ENST00000461115 ANAPC4Q9UJX5 808 aa12.83□□□□□ -0.36
IFT88-204ENST00000461115 XDHP47989 1333 aa12.83□□□□□ -0.36
IFT88-204ENST00000461115 HMGN5P82970 282 aaKnown RBP12.82□□□□□ -0.36
IFT88-204ENST00000461115 TBC1D10CQ8IV04 446 aa12.82□□□□□ -0.36
IFT88-204ENST00000461115 NLGN1Q8N2Q7 840 aa12.82□□□□□ -0.36
IFT88-204ENST00000461115 LRP2BPQ9P2M1 347 aa12.82□□□□□ -0.36
IFT88-204ENST00000461115 NID2Q14112 1375 aa12.82□□□□□ -0.36
IFT88-204ENST00000461115 LAMB1P07942 1786 aa12.82□□□□□ -0.36
IFT88-204ENST00000461115 CTDNEP1O95476 244 aa12.81□□□□□ -0.36
IFT88-204ENST00000461115 MBD3O95983 291 aa12.81□□□□□ -0.36
IFT88-204ENST00000461115 FGRP09769 529 aa12.81□□□□□ -0.36
IFT88-204ENST00000461115 KLRK1P26718 216 aa12.81□□□□□ -0.36
IFT88-204ENST00000461115 RXRBP28702 533 aa12.81□□□□□ -0.36
IFT88-204ENST00000461115 LARP1BQ659C4 914 aaKnown RBP12.81□□□□□ -0.36
IFT88-204ENST00000461115 LCORLQ8N3X6 602 aa12.81□□□□□ -0.36
IFT88-204ENST00000461115 NSUN7Q8NE18 718 aaKnown RBP12.81□□□□□ -0.36
IFT88-204ENST00000461115 TDRD7Q8NHU6 1098 aaKnown RBP12.81□□□□□ -0.36
IFT88-204ENST00000461115 STAG1Q8WVM7 1258 aa12.81□□□□□ -0.36
IFT88-204ENST00000461115 NSUN4Q96CB9 384 aaKnown RBP12.81□□□□□ -0.36
IFT88-204ENST00000461115 TMEM87BQ96K49 555 aa12.81□□□□□ -0.36
IFT88-204ENST00000461115 BAZ2AQ9UIF9 1905 aaKnown RBP12.81□□□□□ -0.36
IFT88-204ENST00000461115 DLEC1Q9Y238 1755 aa12.81□□□□□ -0.36
IFT88-204ENST00000461115 PRC1O43663 620 aa12.8□□□□□ -0.36
IFT88-204ENST00000461115 PRPF40AO75400 957 aaKnown RBP12.8□□□□□ -0.36
IFT88-204ENST00000461115 CYP7A1P22680 504 aa12.8□□□□□ -0.36
IFT88-204ENST00000461115 LIFRP42702 1097 aa12.8□□□□□ -0.36
IFT88-204ENST00000461115 APOBRQ0VD83 1088 aa12.8□□□□□ -0.36
IFT88-204ENST00000461115 ZNF827Q17R98 1081 aa12.8□□□□□ -0.36
IFT88-204ENST00000461115 RALYLQ86SE5 291 aaKnown RBP12.8□□□□□ -0.36
IFT88-204ENST00000461115 ADGRA1Q86SQ6 560 aa12.8□□□□□ -0.36
IFT88-204ENST00000461115 SGMS1Q86VZ5 419 aa12.8□□□□□ -0.36
IFT88-204ENST00000461115 GPT2Q8TD30 523 aa12.8□□□□□ -0.36
IFT88-204ENST00000461115 RBM17Q96I25 401 aaKnown RBP12.8□□□□□ -0.36
IFT88-204ENST00000461115 BRIP1Q9BX63 1249 aa12.8□□□□□ -0.36
IFT88-204ENST00000461115 NACAP1Q9BZK3 213 aa12.8□□□□□ -0.36
IFT88-204ENST00000461115 CNNM2Q9H8M5 875 aa12.8□□□□□ -0.36
IFT88-204ENST00000461115 ARMT1Q9H993 441 aa12.8□□□□□ -0.36
IFT88-204ENST00000461115 DDX49Q9Y6V7 483 aaKnown RBP12.8□□□□□ -0.36
IFT88-204ENST00000461115 CDK5RAP2Q96SN8 1893 aa12.8□□□□□ -0.36
IFT88-204ENST00000461115 PCP11498 1178 aaKnown RBP12.79□□□□□ -0.36
IFT88-204ENST00000461115 ATP2B4P23634 1241 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 NT5C2P49902 561 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 RCAN1P53805 252 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 ZNF445P59923 1031 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 HAND2P61296 217 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 TRDNQ13061 729 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 AKNAD1Q5T1N1 836 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 TXNRD3Q86VQ6 643 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 VPS37DQ86XT2 251 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 CCDC24Q8N4L8 307 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 LRRC2Q9BYS8 371 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 NAPBQ9H115 298 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 HPS5Q9UPZ3 1129 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 MYH2Q9UKX2 1941 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 EP400Q96L91 3159 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 MAGEB6P1A0A0J9YX57 407 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 SH2B2O14492 632 aaPredicted RBP12.79□□□□□ -0.36
IFT88-204ENST00000461115 IL1R1P14778 569 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 SPTY2D1Q68D10 685 aaPredicted RBP12.79□□□□□ -0.36
IFT88-204ENST00000461115 NAA16Q6N069 864 aaPredicted RBP12.79□□□□□ -0.36
IFT88-204ENST00000461115 COL23A1Q86Y22 540 aaPredicted RBP12.79□□□□□ -0.36
IFT88-204ENST00000461115 WDR66Q8TBY9 1149 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 IGDCC4Q8TDY8 1250 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 RPGRQ92834 1020 aaKnown RBP12.79□□□□□ -0.36
IFT88-204ENST00000461115 KRT23Q9C075 422 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 RGS17Q9UGC6 210 aaPredicted RBP12.79□□□□□ -0.36
IFT88-204ENST00000461115 BRPF3Q9ULD4 1205 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 ANGEL1Q9UNK9 670 aaKnown RBP12.79□□□□□ -0.36
IFT88-204ENST00000461115 KIF3AQ9Y496 699 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 TACC3Q9Y6A5 838 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 SLC4A4Q9Y6R1 1079 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 ELP1O95163 1332 aa12.79□□□□□ -0.36
IFT88-204ENST00000461115 COL11A2P13942 1736 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms