RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 GIGYF2Q6Y7W6 1299 aaKnown RBP13.37□□□□□ -0.27
NPHP4-204ENST00000460696 STX8Q9UNK0 236 aa13.37□□□□□ -0.27
NPHP4-204ENST00000460696 ZNF500O60304 480 aaPredicted RBP13.37□□□□□ -0.27
NPHP4-204ENST00000460696 SOGA3Q5TF21 947 aa13.37□□□□□ -0.27
NPHP4-204ENST00000460696 KRT40Q6A162 431 aa13.37□□□□□ -0.27
NPHP4-204ENST00000460696 KAZALD1Q96I82 304 aa13.37□□□□□ -0.27
NPHP4-204ENST00000460696 NLRP3Q96P20 1036 aa13.37□□□□□ -0.27
NPHP4-204ENST00000460696 SRP68Q9UHB9 627 aaKnown RBP13.37□□□□□ -0.27
NPHP4-204ENST00000460696 PDIA6Q15084 440 aa13.37□□□□□ -0.27
NPHP4-204ENST00000460696 ATL3Q6DD88 541 aa13.37□□□□□ -0.27
NPHP4-204ENST00000460696 ZNF444Q8N0Y2 327 aaPredicted RBP13.37□□□□□ -0.27
NPHP4-204ENST00000460696 CMTR1Q8N1G2 835 aaKnown RBP13.37□□□□□ -0.27
NPHP4-204ENST00000460696 TMTC2Q8N394 836 aa13.37□□□□□ -0.27
NPHP4-204ENST00000460696 SPATA5Q8NB90 893 aa13.37□□□□□ -0.27
NPHP4-204ENST00000460696 PUS7LQ9H0K6 701 aaKnown RBP13.37□□□□□ -0.27
NPHP4-204ENST00000460696 CLEC11AQ9Y240 323 aa13.37□□□□□ -0.27
NPHP4-204ENST00000460696 SNAP23O00161 211 aa13.36□□□□□ -0.27
NPHP4-204ENST00000460696 PDE6AP16499 860 aa13.36□□□□□ -0.27
NPHP4-204ENST00000460696 SNW1Q13573 536 aaKnown RBP13.36□□□□□ -0.27
NPHP4-204ENST00000460696 PPP4R3BQ5MIZ7 849 aa13.36□□□□□ -0.27
NPHP4-204ENST00000460696 CDK5RAP3Q96JB5 506 aa13.36□□□□□ -0.27
NPHP4-204ENST00000460696 MAGEC2Q9UBF1 373 aaPredicted RBP13.36□□□□□ -0.27
NPHP4-204ENST00000460696 hCG_1642624A0A1W2PR95 340 aa13.36□□□□□ -0.27
NPHP4-204ENST00000460696 ZNF202O95125 648 aa13.36□□□□□ -0.27
NPHP4-204ENST00000460696 MYSM1Q5VVJ2 828 aa13.36□□□□□ -0.27
NPHP4-204ENST00000460696 VAT1LQ9HCJ6 419 aa13.36□□□□□ -0.27
NPHP4-204ENST00000460696 CCDC87Q9NVE4 849 aa13.36□□□□□ -0.27
NPHP4-204ENST00000460696 MAP3K15Q6ZN16 1313 aa13.36□□□□□ -0.27
NPHP4-204ENST00000460696 ECM2O94769 699 aaPredicted RBP13.36□□□□□ -0.27
NPHP4-204ENST00000460696 ST5P78524 1137 aa13.36□□□□□ -0.27
NPHP4-204ENST00000460696 USPL1Q5W0Q7 1092 aa13.36□□□□□ -0.27
NPHP4-204ENST00000460696 UBXN4Q92575 508 aa13.36□□□□□ -0.27
NPHP4-204ENST00000460696 RIMBP2O15034 1052 aa13.35□□□□□ -0.27
NPHP4-204ENST00000460696 DHX58Q96C10 678 aa13.35□□□□□ -0.27
NPHP4-204ENST00000460696 TMEM87BQ96K49 555 aa13.35□□□□□ -0.27
NPHP4-204ENST00000460696 GPR108Q9NPR9 543 aa13.35□□□□□ -0.27
NPHP4-204ENST00000460696 KCNJ14Q9UNX9 436 aa13.35□□□□□ -0.27
NPHP4-204ENST00000460696 MRVI1Q9Y6F6 885 aa13.35□□□□□ -0.27
NPHP4-204ENST00000460696 A0A0U1RQG5 324 aaPredicted RBP13.35□□□□□ -0.27
NPHP4-204ENST00000460696 PDE8BO95263 885 aa13.35□□□□□ -0.27
NPHP4-204ENST00000460696 TPTE2Q6XPS3 522 aa13.35□□□□□ -0.27
NPHP4-204ENST00000460696 CABP5Q9NP86 173 aa13.35□□□□□ -0.27
NPHP4-204ENST00000460696 GJB4Q9NTQ9 266 aa13.35□□□□□ -0.27
NPHP4-204ENST00000460696 MST1RQ04912 1400 aa13.35□□□□□ -0.27
NPHP4-204ENST00000460696 CCDC194A0A1B0GVG4 234 aa13.35□□□□□ -0.27
NPHP4-204ENST00000460696 BCAMP50895 628 aa13.35□□□□□ -0.27
NPHP4-204ENST00000460696 HLFQ16534 295 aa13.35□□□□□ -0.27
NPHP4-204ENST00000460696 DIS3L2Q8IYB7 885 aaKnown RBP13.35□□□□□ -0.27
NPHP4-204ENST00000460696 CNBD1Q8NA66 436 aa13.35□□□□□ -0.27
NPHP4-204ENST00000460696 PCDHA7Q9UN72 937 aa13.35□□□□□ -0.27
NPHP4-204ENST00000460696 NAP1L1P55209 391 aaKnown RBP13.34□□□□□ -0.27
NPHP4-204ENST00000460696 CRNKL1Q9BZJ0 848 aaKnown RBP13.34□□□□□ -0.27
NPHP4-204ENST00000460696 CIAO1O76071 339 aa13.34□□□□□ -0.27
NPHP4-204ENST00000460696 SSBP05455 408 aaKnown RBP eCLIP13.34□□□□□ -0.27
NPHP4-204ENST00000460696 PDE4BQ07343 736 aa13.34□□□□□ -0.27
NPHP4-204ENST00000460696 NRBP1Q9UHY1 535 aa13.34□□□□□ -0.27
NPHP4-204ENST00000460696 TRIM75PA6NK02 468 aa13.34□□□□□ -0.27
NPHP4-204ENST00000460696 F8W031 263 aaPredicted RBP13.34□□□□□ -0.27
NPHP4-204ENST00000460696 GNAT2P19087 354 aa13.34□□□□□ -0.27
NPHP4-204ENST00000460696 STX17P56962 302 aa13.34□□□□□ -0.27
NPHP4-204ENST00000460696 STIM1Q13586 685 aa13.34□□□□□ -0.27
NPHP4-204ENST00000460696 KIF2AO00139 706 aaPredicted RBP13.33□□□□□ -0.27
NPHP4-204ENST00000460696 NLRP10Q86W26 655 aa13.33□□□□□ -0.27
NPHP4-204ENST00000460696 FBXO18Q8NFZ0 1043 aa13.33□□□□□ -0.27
NPHP4-204ENST00000460696 KAT14Q9H8E8 782 aa13.33□□□□□ -0.27
NPHP4-204ENST00000460696 CLIC4Q9Y696 253 aa13.33□□□□□ -0.27
NPHP4-204ENST00000460696 C3P01024 1663 aa13.33□□□□□ -0.28
NPHP4-204ENST00000460696 ELP1O95163 1332 aa13.33□□□□□ -0.28
NPHP4-204ENST00000460696 GOLGA6L1Q8N7Z2 621 aa13.33□□□□□ -0.28
NPHP4-204ENST00000460696 TMEM87AQ8NBN3 555 aa13.33□□□□□ -0.28
NPHP4-204ENST00000460696 PYCARDQ9ULZ3 195 aa13.33□□□□□ -0.28
NPHP4-204ENST00000460696 RPAP1Q9BWH6 1393 aaPredicted RBP13.33□□□□□ -0.28
NPHP4-204ENST00000460696 SPATA31A1Q5TZJ5 1347 aa13.33□□□□□ -0.28
NPHP4-204ENST00000460696 USP42Q9H9J4 1324 aaKnown RBP13.33□□□□□ -0.28
NPHP4-204ENST00000460696 CRKLP46109 303 aaKnown RBP13.33□□□□□ -0.28
NPHP4-204ENST00000460696 ARHGAP29Q52LW3 1261 aa13.33□□□□□ -0.28
NPHP4-204ENST00000460696 KRI1Q8N9T8 703 aaKnown RBP13.33□□□□□ -0.28
NPHP4-204ENST00000460696 ZHX3Q9H4I2 956 aa13.33□□□□□ -0.28
NPHP4-204ENST00000460696 SEC31BQ9NQW1 1179 aa13.33□□□□□ -0.28
NPHP4-204ENST00000460696 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.33□□□□□ -0.28
NPHP4-204ENST00000460696 RESTQ13127 1097 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 ADALQ6DHV7 355 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 ARHGAP27Q6ZUM4 889 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 MCM9Q9NXL9 1143 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 RIOK3O14730 519 aaKnown RBP13.32□□□□□ -0.28
NPHP4-204ENST00000460696 ZSCAN12O43309 604 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 FOXO4P98177 505 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 IFNL3Q8IZI9 196 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 CCDC150Q8NCX0 1101 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 SDR42E1Q8WUS8 393 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 AIFM3Q96NN9 605 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 DNAI1Q9UI46 699 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 KCNH3Q9ULD8 1083 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 GJA3Q9Y6H8 435 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 REREQ9P2R6 1566 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 GYG1P46976 350 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 NDUFA8P51970 172 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 AKNAD1Q5T1N1 836 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 PAXBP1Q9Y5B6 917 aa13.32□□□□□ -0.28
NPHP4-204ENST00000460696 V9GY48 417 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms