RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 CHMLP26374 656 aa12.25□□□□□ -0.45
UPF2-204ENST00000460569 DYNLL1P63167 89 aaKnown RBP12.25□□□□□ -0.45
UPF2-204ENST00000460569 CASC1Q6TDU7 716 aa12.25□□□□□ -0.45
UPF2-204ENST00000460569 CWC27Q6UX04 472 aaKnown RBP12.25□□□□□ -0.45
UPF2-204ENST00000460569 MTMR14Q8NCE2 650 aa12.25□□□□□ -0.45
UPF2-204ENST00000460569 OSBP2Q969R2 916 aa12.25□□□□□ -0.45
UPF2-204ENST00000460569 AIDAQ96BJ3 306 aa12.25□□□□□ -0.45
UPF2-204ENST00000460569 FAM163AQ96GL9 167 aaPredicted RBP12.25□□□□□ -0.45
UPF2-204ENST00000460569 SEC62Q99442 399 aaKnown RBP12.25□□□□□ -0.45
UPF2-204ENST00000460569 PUS7LQ9H0K6 701 aaKnown RBP12.25□□□□□ -0.45
UPF2-204ENST00000460569 GPR75-ASB3A0A0A6YYF3 556 aa12.24□□□□□ -0.45
UPF2-204ENST00000460569 WNT10BO00744 389 aa12.24□□□□□ -0.45
UPF2-204ENST00000460569 MYO1BO43795 1136 aa12.24□□□□□ -0.45
UPF2-204ENST00000460569 NBPF9Q3BBW0 867 aa12.24□□□□□ -0.45
UPF2-204ENST00000460569 APOBEC3HQ6NTF7 200 aaKnown RBP12.24□□□□□ -0.45
UPF2-204ENST00000460569 LCORLQ8N3X6 602 aa12.24□□□□□ -0.45
UPF2-204ENST00000460569 RUFY2Q8WXA3 655 aa12.24□□□□□ -0.45
UPF2-204ENST00000460569 ZBED3Q96IU2 234 aaPredicted RBP12.24□□□□□ -0.45
UPF2-204ENST00000460569 PRMT6Q96LA8 375 aaPredicted RBP12.24□□□□□ -0.45
UPF2-204ENST00000460569 RIOK1Q9BRS2 568 aaKnown RBP12.24□□□□□ -0.45
UPF2-204ENST00000460569 TAF1DQ9H5J8 278 aaPredicted RBP12.24□□□□□ -0.45
UPF2-204ENST00000460569 ARMT1Q9H993 441 aa12.24□□□□□ -0.45
UPF2-204ENST00000460569 RRAGCQ9HB90 399 aa12.24□□□□□ -0.45
UPF2-204ENST00000460569 NMRK2Q9NPI5 230 aa12.24□□□□□ -0.45
UPF2-204ENST00000460569 HELLSQ9NRZ9 838 aa12.24□□□□□ -0.45
UPF2-204ENST00000460569 DDX60LQ5H9U9 1706 aaKnown RBP12.23□□□□□ -0.45
UPF2-204ENST00000460569 RAD50Q92878 1312 aa12.23□□□□□ -0.45
UPF2-204ENST00000460569 CLRN2A0PK11 232 aa12.23□□□□□ -0.45
UPF2-204ENST00000460569 POTECB2RU33 542 aa12.23□□□□□ -0.45
UPF2-204ENST00000460569 GPAA1O43292 621 aa12.23□□□□□ -0.45
UPF2-204ENST00000460569 VEGFAP15692 232 aaPredicted RBP12.23□□□□□ -0.45
UPF2-204ENST00000460569 PLCG2P16885 1265 aa12.23□□□□□ -0.45
UPF2-204ENST00000460569 YY1P25490 414 aa12.23□□□□□ -0.45
UPF2-204ENST00000460569 MCMDC2Q4G0Z9 681 aa12.23□□□□□ -0.45
UPF2-204ENST00000460569 EAPPQ56P03 285 aaPredicted RBP12.23□□□□□ -0.45
UPF2-204ENST00000460569 CDC42EP5Q6NZY7 148 aa12.23□□□□□ -0.45
UPF2-204ENST00000460569 CCDC129Q6ZRS4 1044 aa12.23□□□□□ -0.45
UPF2-204ENST00000460569 USP50Q70EL3 339 aaPredicted RBP12.23□□□□□ -0.45
UPF2-204ENST00000460569 CERS3Q8IU89 383 aa12.23□□□□□ -0.45
UPF2-204ENST00000460569 TEX11Q8IYF3 940 aa12.23□□□□□ -0.45
UPF2-204ENST00000460569 SH3RF3Q8TEJ3 882 aaPredicted RBP12.23□□□□□ -0.45
UPF2-204ENST00000460569 TDRD3Q9H7E2 651 aaKnown RBP12.23□□□□□ -0.45
UPF2-204ENST00000460569 USP40Q9NVE5 1235 aa12.23□□□□□ -0.45
UPF2-204ENST00000460569 TMOD2Q9NZR1 351 aa12.23□□□□□ -0.45
UPF2-204ENST00000460569 MYH1P12882 1939 aa12.23□□□□□ -0.45
UPF2-204ENST00000460569 BAZ2AQ9UIF9 1905 aaKnown RBP12.23□□□□□ -0.45
UPF2-204ENST00000460569 ASTN2O75129 1339 aaPredicted RBP12.22□□□□□ -0.45
UPF2-204ENST00000460569 CCDC171Q6TFL3 1326 aa12.22□□□□□ -0.45
UPF2-204ENST00000460569 RHBDL3P58872 404 aa12.22□□□□□ -0.45
UPF2-204ENST00000460569 PPP4CP60510 307 aa12.22□□□□□ -0.45
UPF2-204ENST00000460569 SPDYE2Q495Y8 402 aa12.22□□□□□ -0.45
UPF2-204ENST00000460569 ZNF589Q86UQ0 364 aaPredicted RBP12.22□□□□□ -0.45
UPF2-204ENST00000460569 CRNKL1Q9BZJ0 848 aaKnown RBP12.22□□□□□ -0.45
UPF2-204ENST00000460569 VEZTQ9HBM0 779 aa12.22□□□□□ -0.45
UPF2-204ENST00000460569 GPBP1L1Q9HC44 474 aaPredicted RBP12.22□□□□□ -0.45
UPF2-204ENST00000460569 GGA3Q9NZ52 723 aa12.22□□□□□ -0.45
UPF2-204ENST00000460569 ZNF70Q9UC06 446 aaPredicted RBP12.22□□□□□ -0.45
UPF2-204ENST00000460569 LAMB1P07942 1786 aa12.22□□□□□ -0.45
UPF2-204ENST00000460569 USP5P45974 858 aa12.21□□□□□ -0.45
UPF2-204ENST00000460569 HIRAP54198 1017 aaPredicted RBP12.21□□□□□ -0.45
UPF2-204ENST00000460569 CACNB3P54284 484 aa12.21□□□□□ -0.45
UPF2-204ENST00000460569 MFAP1P55081 439 aaKnown RBP12.21□□□□□ -0.45
UPF2-204ENST00000460569 ANGEL2Q5VTE6 544 aaKnown RBP12.21□□□□□ -0.45
UPF2-204ENST00000460569 PNMA8AQ86V59 439 aaPredicted RBP12.21□□□□□ -0.45
UPF2-204ENST00000460569 STRBPQ96SI9 672 aaKnown RBP12.21□□□□□ -0.45
UPF2-204ENST00000460569 ESYT1Q9BSJ8 1104 aa12.21□□□□□ -0.45
UPF2-204ENST00000460569 IL25Q9H293 177 aa12.21□□□□□ -0.45
UPF2-204ENST00000460569 SLC4A4Q9Y6R1 1079 aa12.21□□□□□ -0.45
UPF2-204ENST00000460569 POLR2AP24928 1970 aaKnown RBP12.21□□□□□ -0.46
UPF2-204ENST00000460569 TCP10L2B9ZVM9 353 aa12.2□□□□□ -0.46
UPF2-204ENST00000460569 SGSM2O43147 1006 aa12.2□□□□□ -0.46
UPF2-204ENST00000460569 PICALMQ13492 652 aa12.2□□□□□ -0.46
UPF2-204ENST00000460569 TGFBRAP1Q8WUH2 860 aa12.2□□□□□ -0.46
UPF2-204ENST00000460569 SDR42E1Q8WUS8 393 aa12.2□□□□□ -0.46
UPF2-204ENST00000460569 CLEC11AQ9Y240 323 aa12.2□□□□□ -0.46
UPF2-204ENST00000460569 LAMA4Q16363 1823 aa12.2□□□□□ -0.46
UPF2-204ENST00000460569 FLT1P17948 1338 aa12.19□□□□□ -0.46
UPF2-204ENST00000460569 PRKAB2O43741 272 aa12.19□□□□□ -0.46
UPF2-204ENST00000460569 WDHD1O75717 1129 aaPredicted RBP12.19□□□□□ -0.46
UPF2-204ENST00000460569 APPP05067 770 aa12.19□□□□□ -0.46
UPF2-204ENST00000460569 POTEIP0CG38 1075 aa12.19□□□□□ -0.46
UPF2-204ENST00000460569 POTEJP0CG39 1038 aa12.19□□□□□ -0.46
UPF2-204ENST00000460569 GNAT2P19087 354 aa12.19□□□□□ -0.46
UPF2-204ENST00000460569 NFIAQ12857 509 aa12.19□□□□□ -0.46
UPF2-204ENST00000460569 TNFAIP1Q13829 316 aa12.19□□□□□ -0.46
UPF2-204ENST00000460569 APOBEC3FQ8IUX4 373 aaKnown RBP12.19□□□□□ -0.46
UPF2-204ENST00000460569 MAPKAPK5Q8IW41 473 aa12.19□□□□□ -0.46
UPF2-204ENST00000460569 PITPNM2Q9BZ72 1349 aa12.18□□□□□ -0.46
UPF2-204ENST00000460569 TNNI2P48788 182 aa12.18□□□□□ -0.46
UPF2-204ENST00000460569 TCP10Q12799 353 aa12.18□□□□□ -0.46
UPF2-204ENST00000460569 VPS53Q5VIR6 699 aa12.18□□□□□ -0.46
UPF2-204ENST00000460569 KIAA1211Q6ZU35 1233 aa12.18□□□□□ -0.46
UPF2-204ENST00000460569 LDHDQ86WU2 507 aa12.18□□□□□ -0.46
UPF2-204ENST00000460569 ZC3H15Q8WU90 426 aaKnown RBP12.18□□□□□ -0.46
UPF2-204ENST00000460569 DCPSQ96C86 337 aaKnown RBP12.18□□□□□ -0.46
UPF2-204ENST00000460569 DDRGK1Q96HY6 314 aa12.18□□□□□ -0.46
UPF2-204ENST00000460569 IDI2Q9BXS1 227 aa12.18□□□□□ -0.46
UPF2-204ENST00000460569 DDX4Q9NQI0 724 aaKnown RBP12.18□□□□□ -0.46
UPF2-204ENST00000460569 FAM198AQ9UFP1 575 aa12.18□□□□□ -0.46
UPF2-204ENST00000460569 SCAF8Q9UPN6 1271 aaKnown RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms