RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 NIM1KQ8IY84 436 aa18.79■□□□□ 0.6
SNX17-204ENST00000453453 PKNOX2Q96KN3 472 aa18.79■□□□□ 0.6
SNX17-204ENST00000453453 NOL10Q9BSC4 688 aaKnown RBP18.79■□□□□ 0.6
SNX17-204ENST00000453453 RBM8AQ9Y5S9 174 aaKnown RBP18.79■□□□□ 0.6
SNX17-204ENST00000453453 USP17L3A6NCW0 530 aa18.78■□□□□ 0.6
SNX17-204ENST00000453453 USP17L4A6NCW7 530 aa18.78■□□□□ 0.6
SNX17-204ENST00000453453 GNAT2P19087 354 aa18.78■□□□□ 0.6
SNX17-204ENST00000453453 MSNP26038 577 aaKnown RBP18.78■□□□□ 0.6
SNX17-204ENST00000453453 HSPA4P34932 840 aa18.78■□□□□ 0.6
SNX17-204ENST00000453453 ANAPC15P60006 121 aa18.78■□□□□ 0.6
SNX17-204ENST00000453453 FKBP1AP62942 108 aaKnown RBP18.78■□□□□ 0.6
SNX17-204ENST00000453453 USP17L1Q7RTZ2 530 aa18.78■□□□□ 0.6
SNX17-204ENST00000453453 DDX49Q9Y6V7 483 aaKnown RBP18.78■□□□□ 0.6
SNX17-204ENST00000453453 SCN9AQ15858 1988 aa18.78■□□□□ 0.6
SNX17-204ENST00000453453 HSPD1P10809 573 aaKnown RBP18.78■□□□□ 0.6
SNX17-204ENST00000453453 MIGA1Q8NAN2 632 aa18.78■□□□□ 0.6
SNX17-204ENST00000453453 PDLIM2Q96JY6 352 aa18.78■□□□□ 0.6
SNX17-204ENST00000453453 SYT17Q9BSW7 474 aa18.78■□□□□ 0.6
SNX17-204ENST00000453453 ZNF500O60304 480 aaPredicted RBP18.77■□□□□ 0.6
SNX17-204ENST00000453453 ZKSCAN1P17029 563 aaPredicted RBP18.77■□□□□ 0.6
SNX17-204ENST00000453453 JDP2Q8WYK2 163 aa18.77■□□□□ 0.6
SNX17-204ENST00000453453 STRBPQ96SI9 672 aaKnown RBP18.77■□□□□ 0.6
SNX17-204ENST00000453453 CTNNA3Q9UI47 895 aa18.77■□□□□ 0.6
SNX17-204ENST00000453453 ZNF646O15015 1829 aaPredicted RBP18.76■□□□□ 0.59
SNX17-204ENST00000453453 NFKBIEO00221 500 aa18.76■□□□□ 0.59
SNX17-204ENST00000453453 CERS3Q8IU89 383 aa18.76■□□□□ 0.59
SNX17-204ENST00000453453 ARMT1Q9H993 441 aa18.76■□□□□ 0.59
SNX17-204ENST00000453453 CD2BP2O95400 341 aaKnown RBP18.75■□□□□ 0.59
SNX17-204ENST00000453453 BAG3O95817 575 aa18.75■□□□□ 0.59
SNX17-204ENST00000453453 APPP05067 770 aa18.75■□□□□ 0.59
SNX17-204ENST00000453453 ZNF384Q8TF68 577 aa18.75■□□□□ 0.59
SNX17-204ENST00000453453 ZNRF3Q9ULT6 936 aa18.75■□□□□ 0.59
SNX17-204ENST00000453453 RPAP1Q9BWH6 1393 aaPredicted RBP18.75■□□□□ 0.59
SNX17-204ENST00000453453 MROH7-TTC4A0A0A0MT08 1334 aa18.75■□□□□ 0.59
SNX17-204ENST00000453453 NECTIN1Q15223 517 aa18.74■□□□□ 0.59
SNX17-204ENST00000453453 DACT2Q5SW24 774 aa18.74■□□□□ 0.59
SNX17-204ENST00000453453 VPS53Q5VIR6 699 aa18.74■□□□□ 0.59
SNX17-204ENST00000453453 ADGRA1Q86SQ6 560 aa18.74■□□□□ 0.59
SNX17-204ENST00000453453 LCORLQ8N3X6 602 aa18.74■□□□□ 0.59
SNX17-204ENST00000453453 NACAP1Q9BZK3 213 aa18.74■□□□□ 0.59
SNX17-204ENST00000453453 SLC4A4Q9Y6R1 1079 aa18.74■□□□□ 0.59
SNX17-204ENST00000453453 MYO3BQ8WXR4 1341 aa18.74■□□□□ 0.59
SNX17-204ENST00000453453 GRIK5Q16478 980 aa18.74■□□□□ 0.59
SNX17-204ENST00000453453 CSPP1Q1MSJ5 1256 aa18.74■□□□□ 0.59
SNX17-204ENST00000453453 CREB3L3Q68CJ9 461 aa18.74■□□□□ 0.59
SNX17-204ENST00000453453 MTERF4Q7Z6M4 381 aaKnown RBP18.74■□□□□ 0.59
SNX17-204ENST00000453453 CRNKL1Q9BZJ0 848 aaKnown RBP18.74■□□□□ 0.59
SNX17-204ENST00000453453 NOL7Q9UMY1 257 aaKnown RBP18.74■□□□□ 0.59
SNX17-204ENST00000453453 TTF2Q9UNY4 1162 aaKnown RBP18.74■□□□□ 0.59
SNX17-204ENST00000453453 YDJCA8MPS7 323 aa18.73■□□□□ 0.59
SNX17-204ENST00000453453 PATL2C9JE40 543 aaKnown RBP18.73■□□□□ 0.59
SNX17-204ENST00000453453 SLC27A2O14975 620 aa18.73■□□□□ 0.59
SNX17-204ENST00000453453 DIXDC1Q155Q3 683 aa18.73■□□□□ 0.59
SNX17-204ENST00000453453 CERS5Q8N5B7 392 aa18.73■□□□□ 0.59
SNX17-204ENST00000453453 RIOK1Q9BRS2 568 aaKnown RBP18.73■□□□□ 0.59
SNX17-204ENST00000453453 KCNQ5Q9NR82 932 aa18.73■□□□□ 0.59
SNX17-204ENST00000453453 AATFQ9NY61 560 aaKnown RBP eCLIP18.73■□□□□ 0.59
SNX17-204ENST00000453453 F8W031 263 aaPredicted RBP18.72■□□□□ 0.59
SNX17-204ENST00000453453 PLCG2P16885 1265 aa18.72■□□□□ 0.59
SNX17-204ENST00000453453 RASSF7Q02833 373 aa18.72■□□□□ 0.59
SNX17-204ENST00000453453 ARHGAP27Q6ZUM4 889 aa18.72■□□□□ 0.59
SNX17-204ENST00000453453 FAM163AQ96GL9 167 aaPredicted RBP18.72■□□□□ 0.59
SNX17-204ENST00000453453 LMBRD1Q9NUN5 540 aa18.72■□□□□ 0.59
SNX17-204ENST00000453453 PALD1Q9ULE6 856 aa18.72■□□□□ 0.59
SNX17-204ENST00000453453 SNX14Q9Y5W7 946 aa18.72■□□□□ 0.59
SNX17-204ENST00000453453 COL4A5P29400 1685 aa18.72■□□□□ 0.59
SNX17-204ENST00000453453 ZMYM6O95789 1325 aa18.72■□□□□ 0.59
SNX17-204ENST00000453453 LAMA4Q16363 1823 aa18.71■□□□□ 0.59
SNX17-204ENST00000453453 ST18O60284 1047 aa18.71■□□□□ 0.59
SNX17-204ENST00000453453 DYNLL1P63167 89 aaKnown RBP18.71■□□□□ 0.59
SNX17-204ENST00000453453 KRT32Q14532 448 aa18.71■□□□□ 0.59
SNX17-204ENST00000453453 ALX1Q15699 326 aa18.71■□□□□ 0.59
SNX17-204ENST00000453453 IMMTQ16891 758 aaKnown RBP18.71■□□□□ 0.59
SNX17-204ENST00000453453 KCNB2Q92953 911 aa18.71■□□□□ 0.59
SNX17-204ENST00000453453 TEKT1Q969V4 418 aa18.71■□□□□ 0.59
SNX17-204ENST00000453453 MXD3Q9BW11 206 aa18.71■□□□□ 0.59
SNX17-204ENST00000453453 NAPBQ9H115 298 aa18.71■□□□□ 0.59
SNX17-204ENST00000453453 GAKO14976 1311 aa18.71■□□□□ 0.59
SNX17-204ENST00000453453 RAD17O75943 681 aa18.71■□□□□ 0.58
SNX17-204ENST00000453453 TDO2P48775 406 aa18.71■□□□□ 0.58
SNX17-204ENST00000453453 PPP4CP60510 307 aa18.71■□□□□ 0.58
SNX17-204ENST00000453453 ZSCAN23Q3MJ62 389 aa18.71■□□□□ 0.58
SNX17-204ENST00000453453 RSBN1LQ6PCB5 846 aaPredicted RBP18.71■□□□□ 0.58
SNX17-204ENST00000453453 IL17RAQ96F46 866 aa18.71■□□□□ 0.58
SNX17-204ENST00000453453 DICER1Q9UPY3 1922 aaKnown RBP18.7■□□□□ 0.58
SNX17-204ENST00000453453 GPR75-ASB3A0A0A6YYF3 556 aa18.7■□□□□ 0.58
SNX17-204ENST00000453453 FGAP02671 866 aa18.7■□□□□ 0.58
SNX17-204ENST00000453453 PSMA5P28066 241 aa18.7■□□□□ 0.58
SNX17-204ENST00000453453 BTDP43251 543 aa18.7■□□□□ 0.58
SNX17-204ENST00000453453 HDLBPQ00341 1268 aaKnown RBP18.7■□□□□ 0.58
SNX17-204ENST00000453453 TNIP1Q15025 636 aa18.7■□□□□ 0.58
SNX17-204ENST00000453453 HHIPL2Q6UWX4 724 aa18.7■□□□□ 0.58
SNX17-204ENST00000453453 KIAA0825Q8IV33 1275 aa18.7■□□□□ 0.58
SNX17-204ENST00000453453 IFNL3Q8IZI9 196 aa18.7■□□□□ 0.58
SNX17-204ENST00000453453 GSG1L2A8MUP6 293 aa18.69■□□□□ 0.58
SNX17-204ENST00000453453 PSMD14O00487 310 aa18.69■□□□□ 0.58
SNX17-204ENST00000453453 MBD3O95983 291 aa18.69■□□□□ 0.58
SNX17-204ENST00000453453 VIL1P09327 827 aaKnown RBP18.69■□□□□ 0.58
SNX17-204ENST00000453453 EIF6P56537 245 aaKnown RBP18.69■□□□□ 0.58
SNX17-204ENST00000453453 CIAPIN1Q6FI81 312 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms