RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 TRIM56Q9BRZ2 755 aaKnown RBP6.98□□□□□ -1.29
USP40-209ENST00000452724 WNT11O96014 354 aa6.97□□□□□ -1.29
USP40-209ENST00000452724 SPINK2P20155 84 aa6.97□□□□□ -1.29
USP40-209ENST00000452724 RAB6AP20340 208 aa6.97□□□□□ -1.29
USP40-209ENST00000452724 IRAK1P51617 712 aa6.97□□□□□ -1.29
USP40-209ENST00000452724 GP2P55259 537 aaKnown RBP6.97□□□□□ -1.29
USP40-209ENST00000452724 PPP2R3AQ06190 1150 aa6.97□□□□□ -1.29
USP40-209ENST00000452724 GRM2Q14416 872 aa6.97□□□□□ -1.29
USP40-209ENST00000452724 ACTL7BQ9Y614 415 aa6.97□□□□□ -1.29
USP40-209ENST00000452724 SYNGAP1Q96PV0 1343 aa6.97□□□□□ -1.29
USP40-209ENST00000452724 F13BP05160 661 aa6.96□□□□□ -1.3
USP40-209ENST00000452724 ASPAP45381 313 aa6.96□□□□□ -1.3
USP40-209ENST00000452724 ATP2B2Q01814 1243 aa6.96□□□□□ -1.3
USP40-209ENST00000452724 CYP27A1Q02318 531 aa6.96□□□□□ -1.3
USP40-209ENST00000452724 EAPPQ56P03 285 aaPredicted RBP6.96□□□□□ -1.3
USP40-209ENST00000452724 DUSP27Q5VZP5 1158 aa6.96□□□□□ -1.3
USP40-209ENST00000452724 ZAR1Q86SH2 424 aa6.96□□□□□ -1.3
USP40-209ENST00000452724 EPS8L3Q8TE67 593 aaKnown RBP6.96□□□□□ -1.3
USP40-209ENST00000452724 KRTAP4-8Q9BYQ9 185 aa6.96□□□□□ -1.3
USP40-209ENST00000452724 PRKAG2Q9UGJ0 569 aa6.96□□□□□ -1.3
USP40-209ENST00000452724 AOC2O75106 756 aa6.95□□□□□ -1.3
USP40-209ENST00000452724 LDHBP07195 334 aaKnown RBP6.95□□□□□ -1.3
USP40-209ENST00000452724 CTSBP07858 339 aa6.95□□□□□ -1.3
USP40-209ENST00000452724 SLFN14P0C7P3 912 aa6.95□□□□□ -1.3
USP40-209ENST00000452724 FOSL1P15407 271 aa6.95□□□□□ -1.3
USP40-209ENST00000452724 MCTP1Q6DN14 999 aa6.95□□□□□ -1.3
USP40-209ENST00000452724 GPN3Q9UHW5 284 aaPredicted RBP6.95□□□□□ -1.3
USP40-209ENST00000452724 WWC3Q9ULE0 1092 aa6.95□□□□□ -1.3
USP40-209ENST00000452724 ANGEL1Q9UNK9 670 aaKnown RBP6.95□□□□□ -1.3
USP40-209ENST00000452724 CYP26A1O43174 497 aa6.94□□□□□ -1.3
USP40-209ENST00000452724 ECEL1O95672 775 aa6.94□□□□□ -1.3
USP40-209ENST00000452724 NFICP08651 508 aa6.94□□□□□ -1.3
USP40-209ENST00000452724 FCGRTP55899 365 aa6.94□□□□□ -1.3
USP40-209ENST00000452724 ALG1LQ6GMV1 187 aa6.94□□□□□ -1.3
USP40-209ENST00000452724 FBXO33Q7Z6M2 555 aa6.94□□□□□ -1.3
USP40-209ENST00000452724 RGS22Q8NE09 1264 aa6.94□□□□□ -1.3
USP40-209ENST00000452724 GLIS3Q8NEA6 775 aa6.94□□□□□ -1.3
USP40-209ENST00000452724 FBF1Q8TES7 1133 aa6.94□□□□□ -1.3
USP40-209ENST00000452724 SETDB2Q96T68 719 aa6.94□□□□□ -1.3
USP40-209ENST00000452724 WDR18Q9BV38 432 aa6.94□□□□□ -1.3
USP40-209ENST00000452724 FAM105AQ9NUU6 356 aa6.94□□□□□ -1.3
USP40-209ENST00000452724 TMEM39AQ9NV64 488 aa6.94□□□□□ -1.3
USP40-209ENST00000452724 ZNF157P51786 506 aaPredicted RBP6.93□□□□□ -1.3
USP40-209ENST00000452724 FGD1P98174 961 aa6.93□□□□□ -1.3
USP40-209ENST00000452724 BCL2L13Q9BXK5 485 aa6.93□□□□□ -1.3
USP40-209ENST00000452724 BCO2Q9BYV7 579 aa6.93□□□□□ -1.3
USP40-209ENST00000452724 ATXN3LQ9H3M9 355 aa6.93□□□□□ -1.3
USP40-209ENST00000452724 SEMA6CQ9H3T2 930 aa6.93□□□□□ -1.3
USP40-209ENST00000452724 ACSS3Q9H6R3 686 aa6.93□□□□□ -1.3
USP40-209ENST00000452724 PIDD1Q9HB75 910 aa6.93□□□□□ -1.3
USP40-209ENST00000452724 KRT82Q9NSB4 513 aa6.93□□□□□ -1.3
USP40-209ENST00000452724 OAS3Q9Y6K5 1087 aaKnown RBP6.93□□□□□ -1.3
USP40-209ENST00000452724 PRPF40AO75400 957 aaKnown RBP6.92□□□□□ -1.3
USP40-209ENST00000452724 GSTP1P09211 210 aaKnown RBP6.92□□□□□ -1.3
USP40-209ENST00000452724 PI16Q6UXB8 463 aa6.92□□□□□ -1.3
USP40-209ENST00000452724 GSX1Q9H4S2 264 aaPredicted RBP6.92□□□□□ -1.3
USP40-209ENST00000452724 DAGLAQ9Y4D2 1042 aa6.92□□□□□ -1.3
USP40-209ENST00000452724 COL17A1Q9UMD9 1497 aaPredicted RBP6.92□□□□□ -1.3
USP40-209ENST00000452724 PAX4O43316 350 aa6.91□□□□□ -1.3
USP40-209ENST00000452724 HOXA10P31260 410 aaPredicted RBP6.91□□□□□ -1.3
USP40-209ENST00000452724 ADMP35318 185 aa6.91□□□□□ -1.3
USP40-209ENST00000452724 ID3Q02535 119 aa6.91□□□□□ -1.3
USP40-209ENST00000452724 FAAP100Q0VG06 881 aa6.91□□□□□ -1.3
USP40-209ENST00000452724 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.91□□□□□ -1.3
USP40-209ENST00000452724 GIPC2Q8TF65 315 aa6.91□□□□□ -1.3
USP40-209ENST00000452724 EMILIN2Q9BXX0 1053 aa6.91□□□□□ -1.3
USP40-209ENST00000452724 ZC3H12CQ9C0D7 883 aaKnown RBP6.91□□□□□ -1.3
USP40-209ENST00000452724 CCDC86Q9H6F5 360 aaKnown RBP6.91□□□□□ -1.3
USP40-209ENST00000452724 AKAP2Q9Y2D5 859 aa6.91□□□□□ -1.3
USP40-209ENST00000452724 LIG1P18858 919 aa6.9□□□□□ -1.3
USP40-209ENST00000452724 TAGLNQ01995 201 aaKnown RBP6.9□□□□□ -1.3
USP40-209ENST00000452724 MSMPQ1L6U9 139 aa6.9□□□□□ -1.3
USP40-209ENST00000452724 CYP27C1Q4G0S4 372 aa6.9□□□□□ -1.3
USP40-209ENST00000452724 VSIG10LQ86VR7 867 aa6.9□□□□□ -1.3
USP40-209ENST00000452724 KCNB2Q92953 911 aa6.9□□□□□ -1.3
USP40-209ENST00000452724 FBXL18Q96ME1 805 aa6.9□□□□□ -1.3
USP40-209ENST00000452724 DUSP9Q99956 384 aaKnown RBP6.9□□□□□ -1.3
USP40-209ENST00000452724 SRCIN1Q9C0H9 1055 aa6.9□□□□□ -1.3
USP40-209ENST00000452724 BSDC1Q9NW68 430 aaPredicted RBP6.9□□□□□ -1.3
USP40-209ENST00000452724 PPP1R9AQ9ULJ8 1098 aa6.9□□□□□ -1.3
USP40-209ENST00000452724 FAM170BA6NMN3 283 aa6.89□□□□□ -1.31
USP40-209ENST00000452724 TMPRSS2O15393 492 aa6.89□□□□□ -1.31
USP40-209ENST00000452724 PRNPP04156 253 aa6.89□□□□□ -1.31
USP40-209ENST00000452724 GSTT1P30711 240 aa6.89□□□□□ -1.31
USP40-209ENST00000452724 KIF4BQ2VIQ3 1234 aa6.89□□□□□ -1.31
USP40-209ENST00000452724 ZNF326Q5BKZ1 582 aaKnown RBP6.89□□□□□ -1.31
USP40-209ENST00000452724 NXPE4Q6UWF7 544 aa6.89□□□□□ -1.31
USP40-209ENST00000452724 SULF2Q8IWU5 870 aa6.89□□□□□ -1.31
USP40-209ENST00000452724 GATA6Q92908 595 aa6.89□□□□□ -1.31
USP40-209ENST00000452724 LRRC4CQ9HCJ2 640 aa6.89□□□□□ -1.31
USP40-209ENST00000452724 CRIM1Q9NZV1 1036 aa6.89□□□□□ -1.31
USP40-209ENST00000452724 SPG7Q9UQ90 795 aa6.89□□□□□ -1.31
USP40-209ENST00000452724 SAMM50Q9Y512 469 aa6.89□□□□□ -1.31
USP40-209ENST00000452724 GIPC1O14908 333 aa6.88□□□□□ -1.31
USP40-209ENST00000452724 ZNF765Q7L2R6 523 aa6.88□□□□□ -1.31
USP40-209ENST00000452724 CEP44Q9C0F1 390 aa6.88□□□□□ -1.31
USP40-209ENST00000452724 CCDC39Q9UFE4 941 aa6.88□□□□□ -1.31
USP40-209ENST00000452724 RBM47A0AV96 593 aaKnown RBP6.87□□□□□ -1.31
USP40-209ENST00000452724 ADAMTS4O75173 837 aa6.87□□□□□ -1.31
USP40-209ENST00000452724 ZNF16P17020 682 aaPredicted RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms