RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 SHTN1A0MZ66 631 aa13.97□□□□□ -0.17
SCN9A-204ENST00000452182 CYP7A1P22680 504 aa13.97□□□□□ -0.17
SCN9A-204ENST00000452182 DLGAP5Q15398 846 aa13.97□□□□□ -0.17
SCN9A-204ENST00000452182 CFAP100Q494V2 611 aa13.97□□□□□ -0.17
SCN9A-204ENST00000452182 ADGRA1Q86SQ6 560 aa13.97□□□□□ -0.17
SCN9A-204ENST00000452182 APPBP2Q92624 585 aa13.97□□□□□ -0.17
SCN9A-204ENST00000452182 VEGFAP15692 232 aaPredicted RBP13.97□□□□□ -0.17
SCN9A-204ENST00000452182 PPP4CP60510 307 aa13.97□□□□□ -0.17
SCN9A-204ENST00000452182 ZMYM1Q5SVZ6 1142 aa13.97□□□□□ -0.17
SCN9A-204ENST00000452182 APOBEC3HQ6NTF7 200 aaKnown RBP13.97□□□□□ -0.17
SCN9A-204ENST00000452182 USP50Q70EL3 339 aaPredicted RBP13.97□□□□□ -0.17
SCN9A-204ENST00000452182 WNT10BO00744 389 aa13.96□□□□□ -0.17
SCN9A-204ENST00000452182 BAG3O95817 575 aa13.96□□□□□ -0.17
SCN9A-204ENST00000452182 EPHX2P34913 555 aa13.96□□□□□ -0.17
SCN9A-204ENST00000452182 RBM5P52756 815 aaKnown RBP eCLIP13.96□□□□□ -0.17
SCN9A-204ENST00000452182 KIF4BQ2VIQ3 1234 aa13.96□□□□□ -0.17
SCN9A-204ENST00000452182 SAMD7Q7Z3H4 446 aa13.96□□□□□ -0.17
SCN9A-204ENST00000452182 PNMA8AQ86V59 439 aaPredicted RBP13.96□□□□□ -0.17
SCN9A-204ENST00000452182 PRMT6Q96LA8 375 aaPredicted RBP13.96□□□□□ -0.17
SCN9A-204ENST00000452182 TAF1DQ9H5J8 278 aaPredicted RBP13.96□□□□□ -0.17
SCN9A-204ENST00000452182 HELLSQ9NRZ9 838 aa13.96□□□□□ -0.17
SCN9A-204ENST00000452182 EGFRP00533 1210 aa13.95□□□□□ -0.18
SCN9A-204ENST00000452182 CHGBP05060 677 aa13.95□□□□□ -0.18
SCN9A-204ENST00000452182 CHMLP26374 656 aa13.95□□□□□ -0.18
SCN9A-204ENST00000452182 BTDP43251 543 aa13.95□□□□□ -0.18
SCN9A-204ENST00000452182 RIOK1Q9BRS2 568 aaKnown RBP13.95□□□□□ -0.18
SCN9A-204ENST00000452182 NOL10Q9BSC4 688 aaKnown RBP13.95□□□□□ -0.18
SCN9A-204ENST00000452182 DIAPH3Q9NSV4 1193 aa13.95□□□□□ -0.18
SCN9A-204ENST00000452182 MYO1BO43795 1136 aa13.94□□□□□ -0.18
SCN9A-204ENST00000452182 PLCG2P16885 1265 aa13.94□□□□□ -0.18
SCN9A-204ENST00000452182 HIRAP54198 1017 aaPredicted RBP13.94□□□□□ -0.18
SCN9A-204ENST00000452182 SLFNL1Q499Z3 407 aa13.94□□□□□ -0.18
SCN9A-204ENST00000452182 TBC1D10BQ4KMP7 808 aaPredicted RBP13.94□□□□□ -0.18
SCN9A-204ENST00000452182 TRPM4Q8TD43 1214 aa13.94□□□□□ -0.18
SCN9A-204ENST00000452182 ZC3H15Q8WU90 426 aaKnown RBP13.94□□□□□ -0.18
SCN9A-204ENST00000452182 OSBP2Q969R2 916 aa13.94□□□□□ -0.18
SCN9A-204ENST00000452182 PUS7LQ9H0K6 701 aaKnown RBP13.94□□□□□ -0.18
SCN9A-204ENST00000452182 RRAGCQ9HB90 399 aa13.94□□□□□ -0.18
SCN9A-204ENST00000452182 PCDHAC2Q9Y5I4 1007 aa13.94□□□□□ -0.18
SCN9A-204ENST00000452182 MAGEB6P1A0A0J9YX57 407 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 CDC45O75419 566 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 RHBDL3P58872 404 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 NBPF9Q3BBW0 867 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 MCMDC2Q4G0Z9 681 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 RBM26Q5T8P6 1007 aaKnown RBP13.93□□□□□ -0.18
SCN9A-204ENST00000452182 AATFQ9NY61 560 aaKnown RBP eCLIP13.93□□□□□ -0.18
SCN9A-204ENST00000452182 PGAP2Q9UHJ9 254 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 FOCADQ5VW36 1801 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 CDK5RAP2Q96SN8 1893 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 RAD50Q92878 1312 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 A0A0D9SFI3 127 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 YY1P25490 414 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 NMIQ13287 307 aaPredicted RBP13.93□□□□□ -0.18
SCN9A-204ENST00000452182 FKBP1CQ5VVH2 108 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 CDC42EP5Q6NZY7 148 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 MIGA1Q8NAN2 632 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 RUFY2Q8WXA3 655 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 AIDAQ96BJ3 306 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 FAM227BQ96M60 508 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 NMRK2Q9NPI5 230 aa13.93□□□□□ -0.18
SCN9A-204ENST00000452182 PITPNM2Q9BZ72 1349 aa13.92□□□□□ -0.18
SCN9A-204ENST00000452182 CASC1Q6TDU7 716 aa13.92□□□□□ -0.18
SCN9A-204ENST00000452182 CWC27Q6UX04 472 aaKnown RBP13.92□□□□□ -0.18
SCN9A-204ENST00000452182 ZNF526Q8TF50 670 aaPredicted RBP13.92□□□□□ -0.18
SCN9A-204ENST00000452182 STRBPQ96SI9 672 aaKnown RBP13.92□□□□□ -0.18
SCN9A-204ENST00000452182 SEC62Q99442 399 aaKnown RBP13.92□□□□□ -0.18
SCN9A-204ENST00000452182 IDI2Q9BXS1 227 aa13.92□□□□□ -0.18
SCN9A-204ENST00000452182 TDRD3Q9H7E2 651 aaKnown RBP13.92□□□□□ -0.18
SCN9A-204ENST00000452182 GPBP1L1Q9HC44 474 aaPredicted RBP13.92□□□□□ -0.18
SCN9A-204ENST00000452182 USP40Q9NVE5 1235 aa13.92□□□□□ -0.18
SCN9A-204ENST00000452182 M0R2C6 588 aa13.91□□□□□ -0.18
SCN9A-204ENST00000452182 GPAA1O43292 621 aa13.91□□□□□ -0.18
SCN9A-204ENST00000452182 MBD4O95243 580 aa13.91□□□□□ -0.18
SCN9A-204ENST00000452182 GNAT2P19087 354 aa13.91□□□□□ -0.18
SCN9A-204ENST00000452182 DYNLL1P63167 89 aaKnown RBP13.91□□□□□ -0.18
SCN9A-204ENST00000452182 LCORLQ8N3X6 602 aa13.91□□□□□ -0.18
SCN9A-204ENST00000452182 TMOD2Q9NZR1 351 aa13.91□□□□□ -0.18
SCN9A-204ENST00000452182 ZNF70Q9UC06 446 aaPredicted RBP13.91□□□□□ -0.18
SCN9A-204ENST00000452182 RPAP1Q9BWH6 1393 aaPredicted RBP13.9□□□□□ -0.18
SCN9A-204ENST00000452182 WDHD1O75717 1129 aaPredicted RBP13.9□□□□□ -0.18
SCN9A-204ENST00000452182 MFAP1P55081 439 aaKnown RBP13.9□□□□□ -0.18
SCN9A-204ENST00000452182 SH3RF3Q8TEJ3 882 aaPredicted RBP13.9□□□□□ -0.18
SCN9A-204ENST00000452182 CRNKL1Q9BZJ0 848 aaKnown RBP13.9□□□□□ -0.18
SCN9A-204ENST00000452182 ARMT1Q9H993 441 aa13.9□□□□□ -0.18
SCN9A-204ENST00000452182 CCDC171Q6TFL3 1326 aa13.9□□□□□ -0.18
SCN9A-204ENST00000452182 SGSM2O43147 1006 aa13.9□□□□□ -0.19
SCN9A-204ENST00000452182 ANGEL2Q5VTE6 544 aaKnown RBP13.9□□□□□ -0.19
SCN9A-204ENST00000452182 FAM83AQ86UY5 434 aa13.9□□□□□ -0.19
SCN9A-204ENST00000452182 TEX11Q8IYF3 940 aa13.9□□□□□ -0.19
SCN9A-204ENST00000452182 CLRN2A0PK11 232 aa13.89□□□□□ -0.19
SCN9A-204ENST00000452182 ENTPD3O75355 529 aa13.89□□□□□ -0.19
SCN9A-204ENST00000452182 TNFAIP1Q13829 316 aa13.89□□□□□ -0.19
SCN9A-204ENST00000452182 EAPPQ56P03 285 aaPredicted RBP13.89□□□□□ -0.19
SCN9A-204ENST00000452182 GIMAP6Q6P9H5 292 aa13.89□□□□□ -0.19
SCN9A-204ENST00000452182 ZNF589Q86UQ0 364 aaPredicted RBP13.89□□□□□ -0.19
SCN9A-204ENST00000452182 LDHDQ86WU2 507 aa13.89□□□□□ -0.19
SCN9A-204ENST00000452182 APOBEC3FQ8IUX4 373 aaKnown RBP13.89□□□□□ -0.19
SCN9A-204ENST00000452182 ESYT1Q9BSJ8 1104 aa13.89□□□□□ -0.19
SCN9A-204ENST00000452182 ATP8A2Q9NTI2 1148 aa13.89□□□□□ -0.19
SCN9A-204ENST00000452182 GGA3Q9NZ52 723 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms