RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ERO1AQ96HE7 468 aa15.02■□□□□ -0
PTPRF-208ENST00000437607 USP44Q9H0E7 712 aa15.02■□□□□ -0
PTPRF-208ENST00000437607 SP3Q02447 781 aa15.01□□□□□ -0.01
PTPRF-208ENST00000437607 VGLL4Q14135 290 aa15.01□□□□□ -0.01
PTPRF-208ENST00000437607 OTUD7BQ6GQQ9 843 aa15.01□□□□□ -0.01
PTPRF-208ENST00000437607 KLHDC4Q8TBB5 520 aa15.01□□□□□ -0.01
PTPRF-208ENST00000437607 LRRFIP2Q9Y608 721 aaKnown RBP15.01□□□□□ -0.01
PTPRF-208ENST00000437607 CEP290O15078 2479 aa15.01□□□□□ -0.01
PTPRF-208ENST00000437607 CACNB3P54284 484 aa15□□□□□ -0.01
PTPRF-208ENST00000437607 MAP3K9P80192 1104 aa15□□□□□ -0.01
PTPRF-208ENST00000437607 CHAF1AQ13111 956 aaPredicted RBP15□□□□□ -0.01
PTPRF-208ENST00000437607 ARMC5Q96C12 935 aa15□□□□□ -0.01
PTPRF-208ENST00000437607 EFCC1Q9HA90 598 aa15□□□□□ -0.01
PTPRF-208ENST00000437607 PHIPQ8WWQ0 1821 aa14.99□□□□□ -0.01
PTPRF-208ENST00000437607 CCL15-CCL14A0A0B4J2E2 113 aa14.99□□□□□ -0.01
PTPRF-208ENST00000437607 HMMRO75330 724 aa14.99□□□□□ -0.01
PTPRF-208ENST00000437607 PDE8BO95263 885 aa14.99□□□□□ -0.01
PTPRF-208ENST00000437607 TNNI2P48788 182 aa14.99□□□□□ -0.01
PTPRF-208ENST00000437607 HDLBPQ00341 1268 aaKnown RBP14.99□□□□□ -0.01
PTPRF-208ENST00000437607 CCL15Q16663 113 aa14.99□□□□□ -0.01
PTPRF-208ENST00000437607 METTL24Q5JXM2 366 aa14.99□□□□□ -0.01
PTPRF-208ENST00000437607 PCDHB15Q9Y5E8 787 aa14.99□□□□□ -0.01
PTPRF-208ENST00000437607 FGFR2P21802 821 aa14.98□□□□□ -0.01
PTPRF-208ENST00000437607 BCAMP50895 628 aa14.98□□□□□ -0.01
PTPRF-208ENST00000437607 CEP85Q6P2H3 762 aa14.98□□□□□ -0.01
PTPRF-208ENST00000437607 FAM43AQ8N2R8 423 aa14.98□□□□□ -0.01
PTPRF-208ENST00000437607 OTUD5Q96G74 571 aa14.98□□□□□ -0.01
PTPRF-208ENST00000437607 RWDD1Q9H446 243 aaPredicted RBP14.98□□□□□ -0.01
PTPRF-208ENST00000437607 SNCAIPQ9Y6H5 919 aa14.98□□□□□ -0.01
PTPRF-208ENST00000437607 EN2P19622 333 aaPredicted RBP14.97□□□□□ -0.01
PTPRF-208ENST00000437607 TAF1CQ15572 869 aaPredicted RBP14.97□□□□□ -0.01
PTPRF-208ENST00000437607 APOBEC3HQ6NTF7 200 aaKnown RBP14.97□□□□□ -0.01
PTPRF-208ENST00000437607 CENPQQ7L2Z9 268 aaPredicted RBP14.97□□□□□ -0.01
PTPRF-208ENST00000437607 VPS37DQ86XT2 251 aa14.97□□□□□ -0.01
PTPRF-208ENST00000437607 RPAP2Q8IXW5 612 aaPredicted RBP14.97□□□□□ -0.01
PTPRF-208ENST00000437607 TBC1D22AQ8WUA7 517 aa14.97□□□□□ -0.01
PTPRF-208ENST00000437607 TEKT1Q969V4 418 aa14.97□□□□□ -0.01
PTPRF-208ENST00000437607 ZDHHC15Q96MV8 337 aa14.97□□□□□ -0.01
PTPRF-208ENST00000437607 DOCK3Q8IZD9 2030 aa14.97□□□□□ -0.01
PTPRF-208ENST00000437607 SPDYE5A6NIY4 337 aa14.96□□□□□ -0.01
PTPRF-208ENST00000437607 RFX5P48382 616 aaPredicted RBP14.96□□□□□ -0.01
PTPRF-208ENST00000437607 GTF2A2P52657 109 aa14.96□□□□□ -0.01
PTPRF-208ENST00000437607 HDAC1Q13547 482 aaPredicted RBP14.96□□□□□ -0.01
PTPRF-208ENST00000437607 CAVIN4Q5BKX8 364 aa14.96□□□□□ -0.01
PTPRF-208ENST00000437607 FAM83AQ86UY5 434 aa14.96□□□□□ -0.01
PTPRF-208ENST00000437607 ZKSCAN4Q969J2 545 aaPredicted RBP14.96□□□□□ -0.01
PTPRF-208ENST00000437607 ZNF333Q96JL9 665 aa14.96□□□□□ -0.01
PTPRF-208ENST00000437607 MRIQ9BWK5 157 aa14.96□□□□□ -0.01
PTPRF-208ENST00000437607 CSADQ9Y600 493 aa14.96□□□□□ -0.01
PTPRF-208ENST00000437607 PTCH2Q9Y6C5 1203 aa14.96□□□□□ -0.01
PTPRF-208ENST00000437607 FKBP1CQ5VVH2 108 aa14.95□□□□□ -0.02
PTPRF-208ENST00000437607 ZFYVE28Q9HCC9 887 aa14.95□□□□□ -0.02
PTPRF-208ENST00000437607 RPAP1Q9BWH6 1393 aaPredicted RBP14.95□□□□□ -0.02
PTPRF-208ENST00000437607 ATAD5Q96QE3 1844 aa14.94□□□□□ -0.02
PTPRF-208ENST00000437607 BTBD19C9JJ37 291 aa14.94□□□□□ -0.02
PTPRF-208ENST00000437607 IRF6O14896 467 aa14.94□□□□□ -0.02
PTPRF-208ENST00000437607 FRAT2O75474 233 aaPredicted RBP14.94□□□□□ -0.02
PTPRF-208ENST00000437607 HHIPL2Q6UWX4 724 aa14.94□□□□□ -0.02
PTPRF-208ENST00000437607 WRNIP1Q96S55 665 aa14.94□□□□□ -0.02
PTPRF-208ENST00000437607 ARHGAP39Q9C0H5 1083 aa14.94□□□□□ -0.02
PTPRF-208ENST00000437607 DOCK1Q14185 1865 aa14.94□□□□□ -0.02
PTPRF-208ENST00000437607 SZT2Q5T011 3432 aa14.93□□□□□ -0.02
PTPRF-208ENST00000437607 SRGAP3O43295 1099 aa14.93□□□□□ -0.02
PTPRF-208ENST00000437607 MTX1Q13505 466 aa14.93□□□□□ -0.02
PTPRF-208ENST00000437607 PUM3Q15397 648 aaKnown RBP14.93□□□□□ -0.02
PTPRF-208ENST00000437607 ATG9AQ7Z3C6 839 aa14.93□□□□□ -0.02
PTPRF-208ENST00000437607 ERO1BQ86YB8 467 aa14.93□□□□□ -0.02
PTPRF-208ENST00000437607 SUGT1Q9Y2Z0 365 aa14.93□□□□□ -0.02
PTPRF-208ENST00000437607 MAST3O60307 1309 aa14.92□□□□□ -0.02
PTPRF-208ENST00000437607 EYA2O00167 538 aa14.92□□□□□ -0.02
PTPRF-208ENST00000437607 TLR2O60603 784 aa14.92□□□□□ -0.02
PTPRF-208ENST00000437607 IFIT1P09914 478 aaKnown RBP14.92□□□□□ -0.02
PTPRF-208ENST00000437607 CETPP11597 493 aa14.92□□□□□ -0.02
PTPRF-208ENST00000437607 INPP5BP32019 993 aa14.92□□□□□ -0.02
PTPRF-208ENST00000437607 PPIL2Q13356 520 aa14.92□□□□□ -0.02
PTPRF-208ENST00000437607 ZCCHC17Q9NP64 241 aaKnown RBP14.92□□□□□ -0.02
PTPRF-208ENST00000437607 TMOD2Q9NZR1 351 aa14.92□□□□□ -0.02
PTPRF-208ENST00000437607 CDK5RAP2Q96SN8 1893 aa14.91□□□□□ -0.02
PTPRF-208ENST00000437607 PNMA6EA0A0J9YXQ4 647 aa14.91□□□□□ -0.02
PTPRF-208ENST00000437607 IGHDP01880 384 aa14.91□□□□□ -0.02
PTPRF-208ENST00000437607 CTGFP29279 349 aa14.91□□□□□ -0.02
PTPRF-208ENST00000437607 ATP8B2P98198 1209 aa14.91□□□□□ -0.02
PTPRF-208ENST00000437607 SLC9C1Q4G0N8 1177 aa14.91□□□□□ -0.02
PTPRF-208ENST00000437607 HABP4Q5JVS0 413 aaKnown RBP14.91□□□□□ -0.02
PTPRF-208ENST00000437607 MIGA2Q7L4E1 593 aa14.91□□□□□ -0.02
PTPRF-208ENST00000437607 SIRT2Q8IXJ6 389 aa14.91□□□□□ -0.02
PTPRF-208ENST00000437607 FAM151AQ8WW52 585 aa14.91□□□□□ -0.02
PTPRF-208ENST00000437607 GCC1Q96CN9 775 aa14.91□□□□□ -0.02
PTPRF-208ENST00000437607 DAGLAQ9Y4D2 1042 aa14.91□□□□□ -0.02
PTPRF-208ENST00000437607 MYO5AQ9Y4I1 1855 aaKnown RBP14.91□□□□□ -0.02
PTPRF-208ENST00000437607 LACTBP83111 547 aaPredicted RBP14.9□□□□□ -0.02
PTPRF-208ENST00000437607 PPATQ06203 517 aa14.9□□□□□ -0.02
PTPRF-208ENST00000437607 NFIAQ12857 509 aa14.9□□□□□ -0.02
PTPRF-208ENST00000437607 SNAPC2Q13487 334 aa14.9□□□□□ -0.02
PTPRF-208ENST00000437607 POLA2Q14181 598 aa14.9□□□□□ -0.02
PTPRF-208ENST00000437607 DIXDC1Q155Q3 683 aa14.9□□□□□ -0.02
PTPRF-208ENST00000437607 ZNF341Q9BYN7 854 aa14.9□□□□□ -0.02
PTPRF-208ENST00000437607 ZBTB47Q9UFB7 747 aaPredicted RBP14.9□□□□□ -0.02
PTPRF-208ENST00000437607 ZNF112Q9UJU3 913 aa14.9□□□□□ -0.02
PTPRF-208ENST00000437607 TRIOBPQ9H2D6 2365 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms