RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 MIGA1Q8NAN2 632 aa14.36□□□□□ -0.11
LDB3-205ENST00000429277 NUP58Q9BVL2 599 aa14.36□□□□□ -0.11
LDB3-205ENST00000429277 GUCA1BQ9UMX6 200 aa14.36□□□□□ -0.11
LDB3-205ENST00000429277 ASXL2Q76L83 1435 aa14.35□□□□□ -0.11
LDB3-205ENST00000429277 CALUO43852 315 aaPredicted RBP14.35□□□□□ -0.11
LDB3-205ENST00000429277 MBD4O95243 580 aa14.35□□□□□ -0.11
LDB3-205ENST00000429277 WDR66Q8TBY9 1149 aa14.35□□□□□ -0.11
LDB3-205ENST00000429277 RNF216Q9NWF9 866 aaPredicted RBP14.35□□□□□ -0.11
LDB3-205ENST00000429277 SBNO2Q9Y2G9 1366 aa14.35□□□□□ -0.11
LDB3-205ENST00000429277 IQCDQ96DY2 449 aa14.35□□□□□ -0.11
LDB3-205ENST00000429277 IFNKQ9P0W0 207 aa14.35□□□□□ -0.11
LDB3-205ENST00000429277 TTF2Q9UNY4 1162 aaKnown RBP14.35□□□□□ -0.11
LDB3-205ENST00000429277 HOXC9P31274 260 aa14.35□□□□□ -0.11
LDB3-205ENST00000429277 GJC1P36383 396 aa14.35□□□□□ -0.11
LDB3-205ENST00000429277 ZNF569Q5MCW4 686 aa14.35□□□□□ -0.11
LDB3-205ENST00000429277 NBPF11Q86T75 865 aa14.35□□□□□ -0.11
LDB3-205ENST00000429277 APPBP2Q92624 585 aa14.35□□□□□ -0.11
LDB3-205ENST00000429277 NOX5Q96PH1 765 aa14.35□□□□□ -0.11
LDB3-205ENST00000429277 EYA1Q99502 592 aa14.35□□□□□ -0.11
LDB3-205ENST00000429277 SAMD15Q9P1V8 674 aa14.35□□□□□ -0.11
LDB3-205ENST00000429277 RPS6KB1P23443 525 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 CA8P35219 290 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 CWF19L2Q2TBE0 894 aaKnown RBP14.34□□□□□ -0.11
LDB3-205ENST00000429277 CNBD1Q8NA66 436 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 IFT74Q96LB3 600 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 BICC1Q9H694 974 aaKnown RBP14.34□□□□□ -0.11
LDB3-205ENST00000429277 TBX22Q9Y458 520 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 PDE8AO60658 829 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 LIN9Q5TKA1 542 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 C8orf37Q96NL8 207 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 METTL22Q9BUU2 404 aaPredicted RBP14.34□□□□□ -0.11
LDB3-205ENST00000429277 STIM2Q9P246 746 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 ARHGEF12Q9NZN5 1544 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 TMEM110-MUSTN1A8MSY1 372 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 TRAF5O00463 557 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 HIBADHP31937 336 aaKnown RBP14.34□□□□□ -0.11
LDB3-205ENST00000429277 PDE6BP35913 854 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 SELENOSQ9BQE4 189 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 TRIM7Q9C029 511 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 TMOD4Q9NZQ9 345 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 HSP90AA4PQ58FG1 418 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 CDAN1Q8IWY9 1227 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 FAM212AQ96EL1 285 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 BAG1Q99933 345 aaPredicted RBP14.34□□□□□ -0.11
LDB3-205ENST00000429277 USP26Q9BXU7 913 aa14.34□□□□□ -0.11
LDB3-205ENST00000429277 DAAM2Q86T65 1068 aa14.33□□□□□ -0.11
LDB3-205ENST00000429277 PRDM10Q9NQV6 1147 aa14.33□□□□□ -0.11
LDB3-205ENST00000429277 ODF2LQ9ULJ1 636 aa14.33□□□□□ -0.11
LDB3-205ENST00000429277 BIVM-ERCC5R4GMW8 1640 aa14.33□□□□□ -0.11
LDB3-205ENST00000429277 ACTN4O43707 911 aaKnown RBP14.33□□□□□ -0.12
LDB3-205ENST00000429277 NOC4LQ9BVI4 516 aaKnown RBP14.33□□□□□ -0.12
LDB3-205ENST00000429277 UHRF1BP1Q6BDS2 1440 aa14.33□□□□□ -0.12
LDB3-205ENST00000429277 CUTAO60888 179 aa14.33□□□□□ -0.12
LDB3-205ENST00000429277 ERCC5P28715 1186 aaPredicted RBP14.33□□□□□ -0.12
LDB3-205ENST00000429277 CCT6AP40227 531 aaKnown RBP14.33□□□□□ -0.12
LDB3-205ENST00000429277 CCDC122Q5T0U0 273 aa14.33□□□□□ -0.12
LDB3-205ENST00000429277 CPLX4Q7Z7G2 160 aa14.33□□□□□ -0.12
LDB3-205ENST00000429277 SUPT20HQ8NEM7 779 aa14.33□□□□□ -0.12
LDB3-205ENST00000429277 NKIRAS1Q9NYS0 192 aa14.33□□□□□ -0.12
LDB3-205ENST00000429277 NPC1L1Q9UHC9 1359 aa14.33□□□□□ -0.12
LDB3-205ENST00000429277 CETN3O15182 167 aa14.33□□□□□ -0.12
LDB3-205ENST00000429277 KRT25Q7Z3Z0 450 aa14.33□□□□□ -0.12
LDB3-205ENST00000429277 PICK1Q9NRD5 415 aa14.33□□□□□ -0.12
LDB3-205ENST00000429277 ANGEL1Q9UNK9 670 aaKnown RBP14.33□□□□□ -0.12
LDB3-205ENST00000429277 SBNO1A3KN83 1393 aa14.33□□□□□ -0.12
LDB3-205ENST00000429277 STX17P56962 302 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 C8orf34Q49A92 452 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 HDXQ7Z353 690 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 MLKLQ8NB16 471 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 ATP10BO94823 1461 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 LETM2Q2VYF4 491 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 IBTKQ9P2D0 1353 aaPredicted RBP14.32□□□□□ -0.12
LDB3-205ENST00000429277 VWA3AA6NCI4 1184 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 TNFAIP3P21580 790 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 TBC1D8BQ0IIM8 1120 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 RAPGEF1Q13905 1077 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 DCAF17Q5H9S7 520 aaPredicted RBP14.32□□□□□ -0.12
LDB3-205ENST00000429277 CFAP157Q5JU67 520 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 C16orf71Q8IYS4 520 aaPredicted RBP14.32□□□□□ -0.12
LDB3-205ENST00000429277 SYCP2Q9BX26 1530 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 GMNNO75496 209 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 CAPN2P17655 700 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 BIRC3Q13489 604 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 TNNI3KQ59H18 835 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 HAUS2Q9NVX0 235 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 FPGT-TNNI3KV9GXZ4 949 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 A0A1B0GUL7 405 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 PRIM1P49642 420 aaKnown RBP14.32□□□□□ -0.12
LDB3-205ENST00000429277 ANO1Q5XXA6 986 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 MCTP2Q6DN12 878 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 CYP26C1Q6V0L0 522 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 MKRN1Q9UHC7 482 aaKnown RBP14.32□□□□□ -0.12
LDB3-205ENST00000429277 RSPH14Q9UHP6 348 aa14.32□□□□□ -0.12
LDB3-205ENST00000429277 SHANK2Q9UPX8 1470 aa14.31□□□□□ -0.12
LDB3-205ENST00000429277 PDE4DQ08499 809 aa14.31□□□□□ -0.12
LDB3-205ENST00000429277 STRN3Q13033 797 aa14.31□□□□□ -0.12
LDB3-205ENST00000429277 GGA1Q9UJY5 639 aa14.31□□□□□ -0.12
LDB3-205ENST00000429277 XRCC6P12956 609 aaKnown RBP eCLIP14.31□□□□□ -0.12
LDB3-205ENST00000429277 UBL4BQ8N7F7 174 aa14.31□□□□□ -0.12
LDB3-205ENST00000429277 HELBQ8NG08 1087 aaPredicted RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms