RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 KRT23Q9C075 422 aa16.35■□□□□ 0.21
PTPRU-204ENST00000428026 WDR78Q5VTH9 848 aa16.34■□□□□ 0.21
PTPRU-204ENST00000428026 DAAM2Q86T65 1068 aa16.34■□□□□ 0.21
PTPRU-204ENST00000428026 TTC14Q96N46 770 aa16.34■□□□□ 0.21
PTPRU-204ENST00000428026 AKR1B15C9JRZ8 316 aaPredicted RBP16.34■□□□□ 0.21
PTPRU-204ENST00000428026 PER1O15534 1290 aaPredicted RBP16.34■□□□□ 0.21
PTPRU-204ENST00000428026 MYL5Q02045 173 aa16.34■□□□□ 0.21
PTPRU-204ENST00000428026 NDUFAB1O14561 156 aa16.34■□□□□ 0.21
PTPRU-204ENST00000428026 LDHCP07864 332 aa16.34■□□□□ 0.21
PTPRU-204ENST00000428026 WDHD1O75717 1129 aaPredicted RBP16.34■□□□□ 0.21
PTPRU-204ENST00000428026 HELBQ8NG08 1087 aaPredicted RBP16.34■□□□□ 0.21
PTPRU-204ENST00000428026 BICD1Q96G01 975 aa16.34■□□□□ 0.21
PTPRU-204ENST00000428026 ZBTB40Q9NUA8 1239 aa16.33■□□□□ 0.21
PTPRU-204ENST00000428026 GADD45BO75293 160 aaPredicted RBP16.33■□□□□ 0.2
PTPRU-204ENST00000428026 NEK11Q8NG66 645 aa16.33■□□□□ 0.2
PTPRU-204ENST00000428026 PIK3C2GO75747 1445 aa16.33■□□□□ 0.2
PTPRU-204ENST00000428026 ALDH1L1O75891 902 aa16.33■□□□□ 0.2
PTPRU-204ENST00000428026 RNASE9P60153 205 aaKnown RBP16.33■□□□□ 0.2
PTPRU-204ENST00000428026 QTRT2Q9H974 415 aaKnown RBP16.33■□□□□ 0.2
PTPRU-204ENST00000428026 ATP2B3Q16720 1220 aa16.33■□□□□ 0.2
PTPRU-204ENST00000428026 HGSO14964 777 aaPredicted RBP16.32■□□□□ 0.2
PTPRU-204ENST00000428026 VIMP08670 466 aaKnown RBP16.32■□□□□ 0.2
PTPRU-204ENST00000428026 EEF2P13639 858 aaKnown RBP16.32■□□□□ 0.2
PTPRU-204ENST00000428026 MCM7P33993 719 aa16.32■□□□□ 0.2
PTPRU-204ENST00000428026 CCDC50Q8IVM0 306 aa16.32■□□□□ 0.2
PTPRU-204ENST00000428026 LINS1Q8NG48 757 aa16.32■□□□□ 0.2
PTPRU-204ENST00000428026 CYP7A1P22680 504 aa16.32■□□□□ 0.2
PTPRU-204ENST00000428026 TUBB4BP68371 445 aa16.32■□□□□ 0.2
PTPRU-204ENST00000428026 PLCB3Q01970 1234 aa16.32■□□□□ 0.2
PTPRU-204ENST00000428026 SLC9C2Q5TAH2 1124 aa16.32■□□□□ 0.2
PTPRU-204ENST00000428026 OTUD7AQ8TE49 926 aaPredicted RBP16.32■□□□□ 0.2
PTPRU-204ENST00000428026 ESR2Q92731 530 aa16.32■□□□□ 0.2
PTPRU-204ENST00000428026 CBX8Q9HC52 389 aa16.32■□□□□ 0.2
PTPRU-204ENST00000428026 BAG3O95817 575 aa16.32■□□□□ 0.2
PTPRU-204ENST00000428026 EHMT1Q9H9B1 1298 aa16.32■□□□□ 0.2
PTPRU-204ENST00000428026 ZNF75DP51815 510 aa16.32■□□□□ 0.2
PTPRU-204ENST00000428026 SF3A3Q12874 501 aaKnown RBP eCLIP16.32■□□□□ 0.2
PTPRU-204ENST00000428026 LONRF3Q496Y0 759 aa16.32■□□□□ 0.2
PTPRU-204ENST00000428026 LMBR1Q8WVP7 490 aa16.32■□□□□ 0.2
PTPRU-204ENST00000428026 DDX12PQ92771 950 aa16.32■□□□□ 0.2
PTPRU-204ENST00000428026 CLEC11AQ9Y240 323 aa16.32■□□□□ 0.2
PTPRU-204ENST00000428026 CNGA4Q8IV77 575 aa16.31■□□□□ 0.2
PTPRU-204ENST00000428026 SEC62Q99442 399 aaKnown RBP16.31■□□□□ 0.2
PTPRU-204ENST00000428026 SYNCQ9H7C4 482 aa16.31■□□□□ 0.2
PTPRU-204ENST00000428026 HECW2Q9P2P5 1572 aa16.31■□□□□ 0.2
PTPRU-204ENST00000428026 RIMBP2O15034 1052 aa16.31■□□□□ 0.2
PTPRU-204ENST00000428026 A1BGP04217 495 aa16.31■□□□□ 0.2
PTPRU-204ENST00000428026 INPP5BP32019 993 aa16.31■□□□□ 0.2
PTPRU-204ENST00000428026 GABPB1Q06547 395 aaPredicted RBP16.31■□□□□ 0.2
PTPRU-204ENST00000428026 ZC3H12CQ9C0D7 883 aaKnown RBP16.31■□□□□ 0.2
PTPRU-204ENST00000428026 IGSF22Q8N9C0 903 aa16.31■□□□□ 0.2
PTPRU-204ENST00000428026 PAG1Q9NWQ8 432 aa16.31■□□□□ 0.2
PTPRU-204ENST00000428026 VAMP4O75379 141 aa16.31■□□□□ 0.2
PTPRU-204ENST00000428026 ZFYP08048 801 aaPredicted RBP16.31■□□□□ 0.2
PTPRU-204ENST00000428026 TSPY3P0CV98 308 aa16.31■□□□□ 0.2
PTPRU-204ENST00000428026 TSPY8P0CW00 308 aa16.31■□□□□ 0.2
PTPRU-204ENST00000428026 OAS2P29728 719 aaKnown RBP16.31■□□□□ 0.2
PTPRU-204ENST00000428026 TNNC1P63316 161 aa16.31■□□□□ 0.2
PTPRU-204ENST00000428026 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.31■□□□□ 0.2
PTPRU-204ENST00000428026 VPS16Q9H269 839 aa16.31■□□□□ 0.2
PTPRU-204ENST00000428026 KDM6BO15054 1643 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 NAPGQ99747 312 aaPredicted RBP16.3■□□□□ 0.2
PTPRU-204ENST00000428026 SLC52A2Q9HAB3 445 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 PRPHP41219 470 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 LACTBP83111 547 aaPredicted RBP16.3■□□□□ 0.2
PTPRU-204ENST00000428026 SETDB1Q15047 1291 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 CNBD1Q8NA66 436 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 BCL2L12Q9HB09 334 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 GOLGA6CA6NDK9 693 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 GOLGA6DP0CG33 693 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 NAPAP54920 295 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 GRM1Q13255 1194 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 RBM26Q5T8P6 1007 aaKnown RBP16.3■□□□□ 0.2
PTPRU-204ENST00000428026 DNAJC10Q8IXB1 793 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 TMTC2Q8N394 836 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 CCDC24Q8N4L8 307 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 OGFOD1Q8N543 542 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 FAM89AQ96GI7 184 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 CRNKL1Q9BZJ0 848 aaKnown RBP16.3■□□□□ 0.2
PTPRU-204ENST00000428026 CNNM2Q9H8M5 875 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 GOLGA6AQ9NYA3 693 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 CTNND2Q9UQB3 1225 aa16.3■□□□□ 0.2
PTPRU-204ENST00000428026 BAG6P46379 1132 aa16.29■□□□□ 0.2
PTPRU-204ENST00000428026 PPM1FP49593 454 aaPredicted RBP16.29■□□□□ 0.2
PTPRU-204ENST00000428026 TUBBP07437 444 aa16.29■□□□□ 0.2
PTPRU-204ENST00000428026 UQCRFS1P1P0C7P4 283 aa16.29■□□□□ 0.2
PTPRU-204ENST00000428026 CLNS1AP54105 237 aaKnown RBP16.29■□□□□ 0.2
PTPRU-204ENST00000428026 ZNF445P59923 1031 aa16.29■□□□□ 0.2
PTPRU-204ENST00000428026 ERMNQ8TAM6 284 aa16.29■□□□□ 0.2
PTPRU-204ENST00000428026 STIM2Q9P246 746 aa16.29■□□□□ 0.2
PTPRU-204ENST00000428026 PPP1R7Q15435 360 aa16.29■□□□□ 0.2
PTPRU-204ENST00000428026 GPIHBP1Q8IV16 184 aa16.29■□□□□ 0.2
PTPRU-204ENST00000428026 A0A1B0GUA9 196 aa16.29■□□□□ 0.2
PTPRU-204ENST00000428026 UTP14CQ5TAP6 766 aaKnown RBP16.29■□□□□ 0.2
PTPRU-204ENST00000428026 DHX32Q7L7V1 743 aaKnown RBP16.29■□□□□ 0.2
PTPRU-204ENST00000428026 JDP2Q8WYK2 163 aa16.29■□□□□ 0.2
PTPRU-204ENST00000428026 NAP1L3Q99457 506 aaPredicted RBP16.29■□□□□ 0.2
PTPRU-204ENST00000428026 DDX21Q9NR30 783 aaKnown RBP eCLIP16.29■□□□□ 0.2
PTPRU-204ENST00000428026 NLRP1Q9C000 1473 aa16.29■□□□□ 0.2
PTPRU-204ENST00000428026 FANCCQ00597 558 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms