RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 NT5DC4Q86YG4 428 aa6.81□□□□□ -1.32
USP40-204ENST00000427947 ACSBG1Q96GR2 724 aa6.81□□□□□ -1.32
USP40-204ENST00000427947 TMEM74Q96NL1 305 aa6.81□□□□□ -1.32
USP40-204ENST00000427947 RNF208Q9H0X6 261 aa6.81□□□□□ -1.32
USP40-204ENST00000427947 F8W735 103 aaPredicted RBP6.8□□□□□ -1.32
USP40-204ENST00000427947 LIG1P18858 919 aa6.8□□□□□ -1.32
USP40-204ENST00000427947 TFE3P19532 575 aaPredicted RBP6.8□□□□□ -1.32
USP40-204ENST00000427947 HNRNPUQ00839 825 aaKnown RBP eCLIP6.8□□□□□ -1.32
USP40-204ENST00000427947 RASSF7Q02833 373 aa6.8□□□□□ -1.32
USP40-204ENST00000427947 KCNMA1Q12791 1236 aa6.8□□□□□ -1.32
USP40-204ENST00000427947 GPBAR1Q8TDU6 330 aa6.8□□□□□ -1.32
USP40-204ENST00000427947 AKTIPQ9H8T0 292 aa6.8□□□□□ -1.32
USP40-204ENST00000427947 RAD18Q9NS91 495 aa6.8□□□□□ -1.32
USP40-204ENST00000427947 KRT82Q9NSB4 513 aa6.8□□□□□ -1.32
USP40-204ENST00000427947 IGSF5Q9NSI5 407 aa6.8□□□□□ -1.32
USP40-204ENST00000427947 PCDHB5Q9Y5E4 795 aa6.8□□□□□ -1.32
USP40-204ENST00000427947 TRIM37O94972 964 aa6.79□□□□□ -1.32
USP40-204ENST00000427947 PF4P02776 101 aa6.79□□□□□ -1.32
USP40-204ENST00000427947 ERCC5P28715 1186 aaPredicted RBP6.79□□□□□ -1.32
USP40-204ENST00000427947 CHRNA4P43681 627 aa6.79□□□□□ -1.32
USP40-204ENST00000427947 FAM160A1Q05DH4 1040 aa6.79□□□□□ -1.32
USP40-204ENST00000427947 SEPT6Q14141 434 aa6.79□□□□□ -1.32
USP40-204ENST00000427947 MBTPS1Q14703 1052 aa6.79□□□□□ -1.32
USP40-204ENST00000427947 EXOSC6Q5RKV6 272 aaKnown RBP6.79□□□□□ -1.32
USP40-204ENST00000427947 NUTM2GQ5VZR2 741 aa6.79□□□□□ -1.32
USP40-204ENST00000427947 TRIM42Q8IWZ5 723 aa6.79□□□□□ -1.32
USP40-204ENST00000427947 TMEM130Q8N3G9 435 aa6.79□□□□□ -1.32
USP40-204ENST00000427947 GAL3ST3Q96A11 431 aa6.79□□□□□ -1.32
USP40-204ENST00000427947 WDR89Q96FK6 387 aaPredicted RBP6.79□□□□□ -1.32
USP40-204ENST00000427947 RHOVQ96L33 236 aa6.79□□□□□ -1.32
USP40-204ENST00000427947 WDR18Q9BV38 432 aa6.79□□□□□ -1.32
USP40-204ENST00000427947 TMPRSS13Q9BYE2 586 aa6.79□□□□□ -1.32
USP40-204ENST00000427947 MIR1-1HGQ9H1L0 117 aa6.79□□□□□ -1.32
USP40-204ENST00000427947 ZNF862O60290 1169 aa6.78□□□□□ -1.32
USP40-204ENST00000427947 AOC2O75106 756 aa6.78□□□□□ -1.32
USP40-204ENST00000427947 GLB1P16278 677 aa6.78□□□□□ -1.32
USP40-204ENST00000427947 NOS3P29474 1203 aa6.78□□□□□ -1.32
USP40-204ENST00000427947 IREB2P48200 963 aaKnown RBP6.78□□□□□ -1.32
USP40-204ENST00000427947 CAMK2GQ13555 558 aaPredicted RBP6.78□□□□□ -1.32
USP40-204ENST00000427947 ADGRE1Q14246 886 aa6.78□□□□□ -1.32
USP40-204ENST00000427947 AKAP4Q5JQC9 854 aa6.78□□□□□ -1.32
USP40-204ENST00000427947 FDX2Q6P4F2 183 aa6.78□□□□□ -1.32
USP40-204ENST00000427947 WFDC12Q8WWY7 111 aa6.78□□□□□ -1.32
USP40-204ENST00000427947 CYP4F12Q9HCS2 524 aa6.78□□□□□ -1.32
USP40-204ENST00000427947 MEGF11A6BM72 1044 aa6.77□□□□□ -1.33
USP40-204ENST00000427947 C1QTNF9BB2RNN3 333 aa6.77□□□□□ -1.33
USP40-204ENST00000427947 EIF4A3P38919 411 aaKnown RBP6.77□□□□□ -1.33
USP40-204ENST00000427947 GSK3AP49840 483 aa6.77□□□□□ -1.33
USP40-204ENST00000427947 RACK1P63244 317 aaKnown RBP6.77□□□□□ -1.33
USP40-204ENST00000427947 LMNB2Q03252 620 aa6.77□□□□□ -1.33
USP40-204ENST00000427947 PTPN11Q06124 597 aaPredicted RBP6.77□□□□□ -1.33
USP40-204ENST00000427947 SNAP47Q5SQN1 464 aa6.77□□□□□ -1.33
USP40-204ENST00000427947 CD163Q86VB7 1156 aa6.77□□□□□ -1.33
USP40-204ENST00000427947 TXNRD3Q86VQ6 643 aa6.77□□□□□ -1.33
USP40-204ENST00000427947 C12orf50Q8NA57 414 aaPredicted RBP6.77□□□□□ -1.33
USP40-204ENST00000427947 GOLM1Q8NBJ4 401 aa6.77□□□□□ -1.33
USP40-204ENST00000427947 JARID2Q92833 1246 aaPredicted RBP6.77□□□□□ -1.33
USP40-204ENST00000427947 CACNA2D2Q9NY47 1150 aa6.77□□□□□ -1.33
USP40-204ENST00000427947 DDX41Q9UJV9 622 aaKnown RBP6.77□□□□□ -1.33
USP40-204ENST00000427947 PCDHA4Q9UN74 947 aa6.77□□□□□ -1.33
USP40-204ENST00000427947 AP4E1Q9UPM8 1137 aa6.77□□□□□ -1.33
USP40-204ENST00000427947 GDF11O95390 407 aa6.76□□□□□ -1.33
USP40-204ENST00000427947 RAD51AP2Q09MP3 1159 aa6.76□□□□□ -1.33
USP40-204ENST00000427947 KIF4BQ2VIQ3 1234 aa6.76□□□□□ -1.33
USP40-204ENST00000427947 ANKRD34AQ69YU3 496 aa6.76□□□□□ -1.33
USP40-204ENST00000427947 SCARA3Q6AZY7 606 aa6.76□□□□□ -1.33
USP40-204ENST00000427947 FBXL19Q6PCT2 694 aa6.76□□□□□ -1.33
USP40-204ENST00000427947 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.76□□□□□ -1.33
USP40-204ENST00000427947 BNC2Q6ZN30 1099 aaPredicted RBP6.76□□□□□ -1.33
USP40-204ENST00000427947 ZNF654Q8IZM8 581 aa6.76□□□□□ -1.33
USP40-204ENST00000427947 CEP41Q9BYV8 373 aa6.76□□□□□ -1.33
USP40-204ENST00000427947 CCSER2Q9H7U1 834 aa6.76□□□□□ -1.33
USP40-204ENST00000427947 SUGCTQ9HAC7 445 aa6.76□□□□□ -1.33
USP40-204ENST00000427947 ADAMTS1Q9UHI8 967 aa6.76□□□□□ -1.33
USP40-204ENST00000427947 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.76□□□□□ -1.33
USP40-204ENST00000427947 SLFN14P0C7P3 912 aa6.75□□□□□ -1.33
USP40-204ENST00000427947 ADH5P11766 374 aa6.75□□□□□ -1.33
USP40-204ENST00000427947 DRD2P14416 443 aa6.75□□□□□ -1.33
USP40-204ENST00000427947 Q6ZS46 218 aa6.75□□□□□ -1.33
USP40-204ENST00000427947 SMG8Q8ND04 991 aaKnown RBP6.75□□□□□ -1.33
USP40-204ENST00000427947 ZNF296Q8WUU4 475 aaPredicted RBP6.75□□□□□ -1.33
USP40-204ENST00000427947 SPON2Q9BUD6 331 aa6.75□□□□□ -1.33
USP40-204ENST00000427947 TGIF2Q9GZN2 237 aa6.75□□□□□ -1.33
USP40-204ENST00000427947 SUPT16HQ9Y5B9 1047 aaKnown RBP6.75□□□□□ -1.33
USP40-204ENST00000427947 TMPRSS2O15393 492 aa6.74□□□□□ -1.33
USP40-204ENST00000427947 SART1O43290 800 aaKnown RBP6.74□□□□□ -1.33
USP40-204ENST00000427947 TIAF1O95411 115 aa6.74□□□□□ -1.33
USP40-204ENST00000427947 F13A1P00488 732 aa6.74□□□□□ -1.33
USP40-204ENST00000427947 GARTP22102 1010 aa6.74□□□□□ -1.33
USP40-204ENST00000427947 PREPP48147 710 aa6.74□□□□□ -1.33
USP40-204ENST00000427947 ID3Q02535 119 aa6.74□□□□□ -1.33
USP40-204ENST00000427947 SOX4Q06945 474 aaPredicted RBP6.74□□□□□ -1.33
USP40-204ENST00000427947 PLA2G4EQ3MJ16 856 aa6.74□□□□□ -1.33
USP40-204ENST00000427947 DIEXFQ68CQ4 756 aaKnown RBP6.74□□□□□ -1.33
USP40-204ENST00000427947 KIAA0825Q8IV33 1275 aa6.74□□□□□ -1.33
USP40-204ENST00000427947 TMEM151AQ8N4L1 468 aa6.74□□□□□ -1.33
USP40-204ENST00000427947 MEGF10Q96KG7 1140 aa6.74□□□□□ -1.33
USP40-204ENST00000427947 UBL7Q96S82 380 aaPredicted RBP6.74□□□□□ -1.33
USP40-204ENST00000427947 ACBD3Q9H3P7 528 aa6.74□□□□□ -1.33
USP40-204ENST00000427947 PPP1R9AQ9ULJ8 1098 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms