RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 PTPROQ16827 1216 aa13.52□□□□□ -0.25
UBR4-205ENST00000417040 SEL1L2Q5TEA6 688 aa13.52□□□□□ -0.25
UBR4-205ENST00000417040 PIK3AP1Q6ZUJ8 805 aa13.52□□□□□ -0.25
UBR4-205ENST00000417040 C14orf93Q9H972 538 aaKnown RBP13.52□□□□□ -0.25
UBR4-205ENST00000417040 STIM2Q9P246 746 aa13.52□□□□□ -0.25
UBR4-205ENST00000417040 MAP7D1Q3KQU3 841 aa13.52□□□□□ -0.25
UBR4-205ENST00000417040 KRT79Q5XKE5 535 aa13.52□□□□□ -0.25
UBR4-205ENST00000417040 ARHGEF2Q92974 986 aaKnown RBP13.52□□□□□ -0.25
UBR4-205ENST00000417040 ZSCAN26Q16670 478 aa13.52□□□□□ -0.25
UBR4-205ENST00000417040 LETM2Q2VYF4 491 aa13.52□□□□□ -0.25
UBR4-205ENST00000417040 ATP2A1O14983 1001 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 ZNF202O95125 648 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 KRT9P35527 623 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 TTLL12Q14166 644 aaPredicted RBP13.51□□□□□ -0.25
UBR4-205ENST00000417040 SND1Q7KZF4 910 aaKnown RBP eCLIP13.51□□□□□ -0.25
UBR4-205ENST00000417040 ARFGAP2Q8N6H7 521 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 SMARCC2Q8TAQ2 1214 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 RRP36Q96EU6 259 aaKnown RBP13.51□□□□□ -0.25
UBR4-205ENST00000417040 DESI2Q9BSY9 194 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 TRIM7Q9C029 511 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 C6orf50Q9HD87 102 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 TBC1D7Q9P0N9 293 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 TRAF5O00463 557 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 CIB2O75838 187 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 HLA-DOAP06340 250 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 GUCY2FP51841 1108 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 CFAP157Q5JU67 520 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 GPT2Q8TD30 523 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 FERMT1Q9BQL6 677 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 UTP11Q9Y3A2 253 aaKnown RBP13.51□□□□□ -0.25
UBR4-205ENST00000417040 CALCOCO2Q13137 446 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 GKAP1Q5VSY0 366 aaPredicted RBP13.51□□□□□ -0.25
UBR4-205ENST00000417040 PPP1R21Q6ZMI0 780 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 CCDC26Q8TAB7 109 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 NKIRAS1Q9NYS0 192 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 GBP1P32455 592 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 SARNPP82979 210 aaKnown RBP13.51□□□□□ -0.25
UBR4-205ENST00000417040 CCDC152Q4G0S7 254 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 CCDC65Q8IXS2 484 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 SECISBP2LQ93073 1101 aaKnown RBP13.51□□□□□ -0.25
UBR4-205ENST00000417040 SAP30BPQ9UHR5 308 aaKnown RBP13.51□□□□□ -0.25
UBR4-205ENST00000417040 PTPN21Q16825 1174 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 PHKBQ93100 1093 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 XPO4Q9C0E2 1151 aaKnown RBP13.51□□□□□ -0.25
UBR4-205ENST00000417040 FAM114A2Q9NRY5 505 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 ANAPC4Q9UJX5 808 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 RTL9Q8NET4 1388 aa13.51□□□□□ -0.25
UBR4-205ENST00000417040 PTPRKQ15262 1439 aa13.5□□□□□ -0.25
UBR4-205ENST00000417040 PAXIP1Q6ZW49 1069 aaPredicted RBP13.5□□□□□ -0.25
UBR4-205ENST00000417040 IQUBQ8NA54 791 aa13.5□□□□□ -0.25
UBR4-205ENST00000417040 PPFIBP2Q8ND30 876 aa13.5□□□□□ -0.25
UBR4-205ENST00000417040 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.5□□□□□ -0.258e-7■■■□□ 18.5
UBR4-205ENST00000417040 A0A1B0GUA9 196 aa13.5□□□□□ -0.25
UBR4-205ENST00000417040 ECM2O94769 699 aaPredicted RBP13.5□□□□□ -0.25
UBR4-205ENST00000417040 GAS2L3Q86XJ1 694 aa13.5□□□□□ -0.25
UBR4-205ENST00000417040 ACSBG1Q96GR2 724 aa13.5□□□□□ -0.25
UBR4-205ENST00000417040 TTF2Q9UNY4 1162 aaKnown RBP13.5□□□□□ -0.25
UBR4-205ENST00000417040 CAPN7Q9Y6W3 813 aa13.5□□□□□ -0.25
UBR4-205ENST00000417040 CCNT1O60563 726 aaKnown RBP13.5□□□□□ -0.25
UBR4-205ENST00000417040 SEC31AO94979 1220 aaKnown RBP13.5□□□□□ -0.25
UBR4-205ENST00000417040 IL15P40933 162 aaPredicted RBP13.5□□□□□ -0.25
UBR4-205ENST00000417040 KRT28Q7Z3Y7 464 aa13.5□□□□□ -0.25
UBR4-205ENST00000417040 POTEDQ86YR6 584 aa13.5□□□□□ -0.25
UBR4-205ENST00000417040 CFAP57Q96MR6 1250 aa13.5□□□□□ -0.25
UBR4-205ENST00000417040 DDX21Q9NR30 783 aaKnown RBP eCLIP13.5□□□□□ -0.25
UBR4-205ENST00000417040 hCG_1642624A0A1W2PR95 340 aa13.5□□□□□ -0.25
UBR4-205ENST00000417040 NOL3O60936 208 aaKnown RBP13.5□□□□□ -0.25
UBR4-205ENST00000417040 TUBB4BP68371 445 aa13.5□□□□□ -0.25
UBR4-205ENST00000417040 MRPS9P82933 396 aaKnown RBP13.5□□□□□ -0.25
UBR4-205ENST00000417040 RAB3IL1Q8TBN0 382 aa13.5□□□□□ -0.25
UBR4-205ENST00000417040 MCM9Q9NXL9 1143 aa13.5□□□□□ -0.25
UBR4-205ENST00000417040 CEBPAP49715 358 aaPredicted RBP13.49□□□□□ -0.25
UBR4-205ENST00000417040 ATP1A2P50993 1020 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 SP4Q02446 784 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 ASIC2Q16515 512 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 MIPOL1Q8TD10 442 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 BAIAP2L1Q9UHR4 511 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 TRIM68Q6AZZ1 485 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 IFT20Q8IY31 132 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 PPIP5K1Q6PFW1 1433 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 LDHCP07864 332 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 GOLGA8FQ08AF8 430 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 GOLGA8DPQ0D2H9 430 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 NEDD9Q14511 834 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 WDR66Q8TBY9 1149 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 CARD14Q9BXL6 1004 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 PYCARDQ9ULZ3 195 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 SOS1Q07889 1333 aaPredicted RBP13.49□□□□□ -0.25
UBR4-205ENST00000417040 NR1I2O75469 434 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 SV2BQ7L1I2 683 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 POLKQ9UBT6 870 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 FEZ2Q9UHY8 353 aaPredicted RBP13.49□□□□□ -0.25
UBR4-205ENST00000417040 TIMM10P62072 90 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 CTDSPL2Q05D32 466 aa13.49□□□□□ -0.25
UBR4-205ENST00000417040 IQGAP2Q13576 1575 aa13.48□□□□□ -0.25
UBR4-205ENST00000417040 CEP104O60308 925 aa13.48□□□□□ -0.25
UBR4-205ENST00000417040 SPOPO43791 374 aa13.48□□□□□ -0.25
UBR4-205ENST00000417040 COBLO75128 1261 aa13.48□□□□□ -0.25
UBR4-205ENST00000417040 MBD4O95243 580 aa13.48□□□□□ -0.25
UBR4-205ENST00000417040 GNGT1P63211 74 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms