RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ZC3H12CQ9C0D7 883 aaKnown RBP17.53■□□□□ 0.4
USP4-203ENST00000415188 GREM2Q9H772 168 aa17.53■□□□□ 0.4
USP4-203ENST00000415188 HELLSQ9NRZ9 838 aa17.53■□□□□ 0.4
USP4-203ENST00000415188 GGA1Q9UJY5 639 aa17.53■□□□□ 0.4
USP4-203ENST00000415188 LARGE1O95461 756 aa17.52■□□□□ 0.4
USP4-203ENST00000415188 CPA1P15085 419 aa17.52■□□□□ 0.4
USP4-203ENST00000415188 ME3Q16798 604 aa17.52■□□□□ 0.4
USP4-203ENST00000415188 HS1BP3Q53T59 392 aa17.52■□□□□ 0.4
USP4-203ENST00000415188 CST9Q5W186 159 aa17.52■□□□□ 0.4
USP4-203ENST00000415188 ZNF589Q86UQ0 364 aaPredicted RBP17.52■□□□□ 0.4
USP4-203ENST00000415188 USP48Q86UV5 1035 aa17.52■□□□□ 0.4
USP4-203ENST00000415188 GLIS2Q9BZE0 524 aaPredicted RBP17.52■□□□□ 0.4
USP4-203ENST00000415188 RBM27Q9P2N5 1060 aaKnown RBP17.52■□□□□ 0.4
USP4-203ENST00000415188 CHMP3Q9Y3E7 222 aa17.52■□□□□ 0.4
USP4-203ENST00000415188 WTIPA6NIX2 430 aaPredicted RBP17.51■□□□□ 0.39
USP4-203ENST00000415188 UBE2HP62256 183 aa17.51■□□□□ 0.39
USP4-203ENST00000415188 LRRFIP1Q32MZ4 808 aaKnown RBP17.51■□□□□ 0.39
USP4-203ENST00000415188 SAMD7Q7Z3H4 446 aa17.51■□□□□ 0.39
USP4-203ENST00000415188 DNAJC2Q99543 621 aaKnown RBP17.51■□□□□ 0.39
USP4-203ENST00000415188 MTMR6Q9Y217 621 aa17.51■□□□□ 0.39
USP4-203ENST00000415188 H7C1D1 291 aa17.5■□□□□ 0.39
USP4-203ENST00000415188 EGFRP00533 1210 aa17.5■□□□□ 0.39
USP4-203ENST00000415188 DPF2Q92785 391 aa17.5■□□□□ 0.39
USP4-203ENST00000415188 CDC5LQ99459 802 aaKnown RBP17.5■□□□□ 0.39
USP4-203ENST00000415188 RBSNQ9H1K0 784 aa17.5■□□□□ 0.39
USP4-203ENST00000415188 PGAP2Q9UHJ9 254 aa17.5■□□□□ 0.39
USP4-203ENST00000415188 TPCN1Q9ULQ1 816 aa17.5■□□□□ 0.39
USP4-203ENST00000415188 XDHP47989 1333 aa17.5■□□□□ 0.39
USP4-203ENST00000415188 SCN9AQ15858 1988 aa17.5■□□□□ 0.39
USP4-203ENST00000415188 ESPNB1AK53 854 aa17.5■□□□□ 0.39
USP4-203ENST00000415188 FOXN1O15353 648 aa17.5■□□□□ 0.39
USP4-203ENST00000415188 HMGB1P09429 215 aaKnown RBP17.5■□□□□ 0.39
USP4-203ENST00000415188 ST3GAL1Q11201 340 aa17.5■□□□□ 0.39
USP4-203ENST00000415188 TBC1D10BQ4KMP7 808 aaPredicted RBP17.5■□□□□ 0.39
USP4-203ENST00000415188 DSCC1Q9BVC3 393 aa17.5■□□□□ 0.39
USP4-203ENST00000415188 PAG1Q9NWQ8 432 aa17.5■□□□□ 0.39
USP4-203ENST00000415188 AKAP2Q9Y2D5 859 aa17.5■□□□□ 0.39
USP4-203ENST00000415188 SYCE3A1L190 88 aa17.49■□□□□ 0.39
USP4-203ENST00000415188 G3V3G9 751 aa17.49■□□□□ 0.39
USP4-203ENST00000415188 CELF2O95319 508 aaKnown RBP17.49■□□□□ 0.39
USP4-203ENST00000415188 CCDC183Q5T5S1 534 aa17.49■□□□□ 0.39
USP4-203ENST00000415188 DCAF8Q5TAQ9 597 aa17.49■□□□□ 0.39
USP4-203ENST00000415188 DLK2Q6UY11 383 aa17.49■□□□□ 0.39
USP4-203ENST00000415188 ZC3H15Q8WU90 426 aaKnown RBP17.49■□□□□ 0.39
USP4-203ENST00000415188 EDC3Q96F86 508 aaKnown RBP17.49■□□□□ 0.39
USP4-203ENST00000415188 CHAMP1Q96JM3 812 aa17.49■□□□□ 0.39
USP4-203ENST00000415188 TSPY26PQ9H489 355 aa17.49■□□□□ 0.39
USP4-203ENST00000415188 MINPP1Q9UNW1 487 aa17.49■□□□□ 0.39
USP4-203ENST00000415188 MYH3P11055 1940 aa17.48■□□□□ 0.39
USP4-203ENST00000415188 VIL1P09327 827 aaKnown RBP17.48■□□□□ 0.39
USP4-203ENST00000415188 ATP2B4P23634 1241 aa17.48■□□□□ 0.39
USP4-203ENST00000415188 RPS12P25398 132 aaKnown RBP17.48■□□□□ 0.39
USP4-203ENST00000415188 TOB2Q14106 344 aaPredicted RBP17.48■□□□□ 0.39
USP4-203ENST00000415188 ZMYM1Q5SVZ6 1142 aa17.48■□□□□ 0.39
USP4-203ENST00000415188 RBM26Q5T8P6 1007 aaKnown RBP17.48■□□□□ 0.39
USP4-203ENST00000415188 PAXIP1Q6ZW49 1069 aaPredicted RBP17.48■□□□□ 0.39
USP4-203ENST00000415188 FAM184AQ8NB25 1140 aa17.48■□□□□ 0.39
USP4-203ENST00000415188 PDLIM2Q96JY6 352 aa17.48■□□□□ 0.39
USP4-203ENST00000415188 NEK1Q96PY6 1258 aa17.48■□□□□ 0.39
USP4-203ENST00000415188 BSDC1Q9NW68 430 aaPredicted RBP17.48■□□□□ 0.39
USP4-203ENST00000415188 CEP126Q9P2H0 1117 aa17.48■□□□□ 0.39
USP4-203ENST00000415188 LAMA4Q16363 1823 aa17.48■□□□□ 0.39
USP4-203ENST00000415188 TRPM7Q96QT4 1865 aa17.48■□□□□ 0.39
USP4-203ENST00000415188 GRM1Q13255 1194 aa17.47■□□□□ 0.39
USP4-203ENST00000415188 CCDC57Q2TAC2 916 aa17.47■□□□□ 0.39
USP4-203ENST00000415188 CYP4F22Q6NT55 531 aa17.47■□□□□ 0.39
USP4-203ENST00000415188 TNS4Q8IZW8 715 aa17.47■□□□□ 0.39
USP4-203ENST00000415188 CHMP4CQ96CF2 233 aa17.47■□□□□ 0.39
USP4-203ENST00000415188 NEUROD6Q96NK8 337 aa17.47■□□□□ 0.39
USP4-203ENST00000415188 ZNF408Q9H9D4 720 aa17.47■□□□□ 0.39
USP4-203ENST00000415188 CNPY2Q9Y2B0 182 aa17.47■□□□□ 0.39
USP4-203ENST00000415188 TLL2Q9Y6L7 1015 aa17.47■□□□□ 0.39
USP4-203ENST00000415188 IFIT1P09914 478 aaKnown RBP17.46■□□□□ 0.39
USP4-203ENST00000415188 ITGA6P23229 1130 aa17.46■□□□□ 0.39
USP4-203ENST00000415188 CDC37L1Q7L3B6 337 aa17.46■□□□□ 0.39
USP4-203ENST00000415188 CAPNS2Q96L46 248 aa17.46■□□□□ 0.39
USP4-203ENST00000415188 LARP6Q9BRS8 491 aaKnown RBP17.46■□□□□ 0.39
USP4-203ENST00000415188 WBP1LQ9NX94 342 aa17.46■□□□□ 0.39
USP4-203ENST00000415188 MYH7P12883 1935 aa17.46■□□□□ 0.39
USP4-203ENST00000415188 A0A1B0GUL7 405 aa17.45■□□□□ 0.38
USP4-203ENST00000415188 GADD45BO75293 160 aaPredicted RBP17.45■□□□□ 0.38
USP4-203ENST00000415188 CSF1RP07333 972 aa17.45■□□□□ 0.38
USP4-203ENST00000415188 UVSSAQ2YD98 709 aa17.45■□□□□ 0.38
USP4-203ENST00000415188 LARP1BQ659C4 914 aaKnown RBP17.45■□□□□ 0.38
USP4-203ENST00000415188 GOLIM4O00461 696 aa17.44■□□□□ 0.38
USP4-203ENST00000415188 RNF113AO15541 343 aaKnown RBP17.44■□□□□ 0.38
USP4-203ENST00000415188 ZFYP08048 801 aaPredicted RBP17.44■□□□□ 0.38
USP4-203ENST00000415188 IGHMBP2P38935 993 aaKnown RBP17.44■□□□□ 0.38
USP4-203ENST00000415188 KIF4BQ2VIQ3 1234 aa17.44■□□□□ 0.38
USP4-203ENST00000415188 LRRC24Q50LG9 513 aa17.44■□□□□ 0.38
USP4-203ENST00000415188 NECAB1Q8N987 351 aa17.44■□□□□ 0.38
USP4-203ENST00000415188 AIDAQ96BJ3 306 aa17.44■□□□□ 0.38
USP4-203ENST00000415188 ELP1O95163 1332 aa17.44■□□□□ 0.38
USP4-203ENST00000415188 VPS37CA5D8V6 355 aaPredicted RBP17.44■□□□□ 0.38
USP4-203ENST00000415188 KRT85P78386 507 aa17.44■□□□□ 0.38
USP4-203ENST00000415188 CCDC158Q5M9N0 1113 aa17.44■□□□□ 0.38
USP4-203ENST00000415188 RSBN1LQ6PCB5 846 aaPredicted RBP17.44■□□□□ 0.38
USP4-203ENST00000415188 SAPCD2Q86UD0 394 aa17.44■□□□□ 0.38
USP4-203ENST00000415188 GTF3C6Q969F1 213 aa17.44■□□□□ 0.38
USP4-203ENST00000415188 LLPHQ9BRT6 129 aaKnown RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 1042.8 ms